Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 C 1.50692 * 109.47283 * 239.99669 * 2 1 3 5 5 O 1.20829 * 119.99799 * 240.00030 * 4 2 1 6 6 O 1.34227 * 120.00414 * 60.00119 * 4 2 1 7 7 C 1.45196 * 117.00218 * 180.02562 * 6 4 2 8 8 C 1.50700 * 109.46882 * 179.97438 * 7 6 4 9 9 O 1.21290 * 120.00442 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00064 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00179 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00292 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99842 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00361 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99798 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47525 * 59.99234 * 15 13 11 17 17 H 1.48501 * 109.47180 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46975 * 299.99392 * 15 13 11 19 19 C 1.50706 * 109.46980 * 119.99350 * 2 1 3 20 20 C 1.38238 * 119.99775 * 180.02562 * 19 2 1 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38233 * 120.00212 * 0.02562 * 19 2 1 25 25 H 1.09000 * 109.47114 * 300.00500 * 1 2 3 26 26 H 1.08992 * 109.47226 * 60.00452 * 1 2 3 27 27 H 1.09005 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47209 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46703 * 299.99861 * 3 2 1 30 30 H 1.08992 * 109.47234 * 59.99764 * 3 2 1 31 31 H 1.08998 * 109.47055 * 299.99414 * 7 6 4 32 32 H 1.09003 * 109.47518 * 59.99621 * 7 6 4 33 33 H 0.97005 * 119.99727 * 359.97438 * 10 8 7 34 34 H 0.97000 * 120.00208 * 180.02562 * 14 13 11 35 35 H 1.08005 * 120.00068 * 359.97438 * 20 19 2 36 36 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 39 39 H 1.07999 * 119.99956 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 8 2.7270 -1.6928 -1.1194 6 8 1.7081 -0.2520 -2.4495 7 6 2.2269 -0.9866 -3.5895 8 6 1.7620 -0.3301 -4.8638 9 8 1.0627 0.6598 -4.8160 10 7 2.1241 -0.8423 -6.0567 11 6 1.7017 -0.2448 -7.2161 12 1 1.0784 0.6361 -7.1735 13 6 2.0746 -0.7733 -8.4459 14 7 2.8326 -1.8454 -8.4977 15 14 1.4995 0.0413 -10.0255 16 1 1.9962 1.4400 -10.0705 17 1 2.0304 -0.7098 -11.1914 18 1 0.0152 0.0414 -10.0704 19 6 2.0323 -0.7103 1.2306 20 6 3.3914 -0.8361 1.4496 21 6 3.8521 -1.4872 2.5787 22 6 2.9539 -2.0119 3.4890 23 6 1.5948 -1.8908 3.2672 24 6 1.1340 -1.2360 2.1403 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.3164 -0.9862 -3.5567 32 1 1.8627 -2.0134 -3.5563 33 1 2.6843 -1.6334 -6.0950 34 1 3.0932 -2.2141 -9.3563 35 1 4.0932 -0.4257 0.7386 36 1 4.9139 -1.5858 2.7496 37 1 3.3139 -2.5202 4.3712 38 1 0.8930 -2.3045 3.9762 39 1 0.0722 -1.1381 1.9690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = -101.759510 kcal Electronic energy + Delta-G solvation = -22633.438877 eV Core-core repulsion = 19120.037198 eV Total energy + Delta-G solvation = -3513.401679 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91018 -39.26188 -38.08265 -36.12482 -35.49061 -33.99525 -31.37973 -31.17161 -29.97535 -28.34248 -27.55943 -24.89249 -24.08893 -22.54683 -22.16366 -19.67904 -19.56817 -18.07281 -17.33878 -17.13042 -16.40205 -16.21834 -15.56942 -15.04547 -14.90830 -14.55490 -14.21964 -14.04475 -13.97343 -13.57500 -13.29196 -13.03901 -12.66782 -12.40821 -12.23673 -12.16417 -11.92265 -11.78023 -11.63523 -11.61941 -11.11345 -10.99942 -10.89305 -10.49164 -10.37691 -10.30932 -10.13461 -9.59445 -9.00550 -8.88439 -8.51415 -8.08235 -6.49780 -3.91933 1.17210 1.31211 2.33938 2.74112 3.15395 3.22674 3.27351 3.70752 3.74226 4.11504 4.26612 4.54054 4.69912 4.79994 4.87795 4.93530 4.99703 5.09264 5.15235 5.33405 5.41538 5.48403 5.51381 5.61738 5.64315 5.70494 5.71177 5.82989 5.91512 6.02749 6.04842 6.08414 6.35003 6.39201 6.47577 6.65371 6.87262 7.47583 7.86932 7.97750 8.48816 9.07059 9.39541 9.89527 10.67425 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038125 B = 0.002936 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.255580 B = 9535.281514 C = 9878.417943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.010 4.010 3 C -0.140 4.140 4 C 0.465 3.535 5 O -0.505 6.505 6 O -0.321 6.321 7 C 0.059 3.941 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.303 4.303 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.069 4.069 20 C -0.086 4.086 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.111 4.111 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 0.544 21.276 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.012 4.012 3 C -0.197 4.197 4 C 0.307 3.693 5 O -0.393 6.393 6 O -0.235 6.235 7 C -0.018 4.018 8 C 0.224 3.776 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.069 4.069 20 C -0.104 4.104 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.129 4.129 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.494 0.805 21.116 21.137 hybrid contribution 0.346 -0.496 -0.938 1.116 sum -0.148 0.309 20.178 20.181 Atomic orbital electron populations 1.21979 0.91081 1.03156 1.04093 1.19332 0.98078 0.96191 0.87559 1.21911 1.01620 0.92174 1.04022 1.23497 0.77730 0.82911 0.85165 1.90663 1.35554 1.25685 1.87371 1.86537 1.68710 1.54447 1.13802 1.22751 0.99516 0.95657 0.83889 1.19311 0.86784 0.87633 0.83889 1.90555 1.41381 1.27425 1.86617 1.41705 1.45721 1.27661 1.03932 1.19675 1.29898 1.11463 0.82164 0.87665 1.25311 0.96558 0.96212 0.99657 1.69604 1.35513 1.21411 1.27285 0.85860 0.79110 0.79019 0.79910 1.19749 1.20869 1.19744 1.19355 0.93799 0.99127 0.94608 1.20962 0.94863 0.97881 0.96691 1.21105 0.99689 0.98628 0.94559 1.21153 0.93487 0.99822 0.99323 1.21093 0.95688 0.99746 0.97718 1.21148 0.99778 0.97702 0.94294 0.90691 0.90031 0.91726 0.91939 0.90036 0.90880 0.89651 0.89656 0.77172 0.91570 0.86287 0.86074 0.86243 0.86066 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.06 37.16 0.26 -1.30 16 2 C -0.01 -0.13 0.80 -156.81 -0.12 -0.26 16 3 C -0.14 -1.53 8.22 37.16 0.31 -1.23 16 4 C 0.47 7.59 6.42 36.00 0.23 7.82 16 5 O -0.50 -9.15 14.86 -18.75 -0.28 -9.43 16 6 O -0.32 -6.01 9.56 -45.89 -0.44 -6.45 16 7 C 0.06 1.15 5.94 36.01 0.21 1.37 16 8 C 0.44 10.62 7.86 -10.98 -0.09 10.54 16 9 O -0.58 -15.93 16.08 -14.11 -0.23 -16.16 16 10 N -0.55 -14.05 5.29 -10.96 -0.06 -14.11 16 11 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 12 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 13 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 15 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 19 C -0.07 -0.83 4.38 -104.62 -0.46 -1.29 16 20 C -0.09 -1.04 7.93 -39.58 -0.31 -1.36 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.11 -1.17 8.98 -39.58 -0.36 -1.53 16 25 H 0.07 0.61 7.51 -51.93 -0.39 0.22 16 26 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 28 H 0.06 0.67 7.39 -51.93 -0.38 0.28 16 29 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 32 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 33 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.12 1.45 7.52 -52.48 -0.39 1.05 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.11 5.90 -52.49 -0.31 0.80 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -32.49 336.62 -7.07 -39.55 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.08 Total: 9.23 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.76 Total: 0.03 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.67 Total: -37.54 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.94 Total: -32.03 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.49 -7.07 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.205 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds