Wall clock time and date at job start Tue Mar 31 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 C 1.50692 * 109.47283 * 239.99669 * 2 1 3 5 5 O 1.20829 * 119.99799 * 240.00030 * 4 2 1 6 6 O 1.34227 * 120.00414 * 60.00119 * 4 2 1 7 7 C 1.45196 * 117.00218 * 180.02562 * 6 4 2 8 8 C 1.50700 * 109.46882 * 179.97438 * 7 6 4 9 9 O 1.21290 * 120.00442 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00064 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00179 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00292 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99842 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00361 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99798 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47525 * 59.99234 * 15 13 11 17 17 H 1.48501 * 109.47180 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46975 * 299.99392 * 15 13 11 19 19 C 1.50706 * 109.46980 * 119.99350 * 2 1 3 20 20 C 1.38238 * 119.99775 * 180.02562 * 19 2 1 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38233 * 120.00212 * 0.02562 * 19 2 1 25 25 H 1.09000 * 109.47114 * 300.00500 * 1 2 3 26 26 H 1.08992 * 109.47226 * 60.00452 * 1 2 3 27 27 H 1.09005 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47209 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46703 * 299.99861 * 3 2 1 30 30 H 1.08992 * 109.47234 * 59.99764 * 3 2 1 31 31 H 1.08998 * 109.47055 * 299.99414 * 7 6 4 32 32 H 1.09003 * 109.47518 * 59.99621 * 7 6 4 33 33 H 0.97005 * 119.99727 * 359.97438 * 10 8 7 34 34 H 0.97000 * 120.00208 * 180.02562 * 14 13 11 35 35 H 1.08005 * 120.00068 * 359.97438 * 20 19 2 36 36 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 39 39 H 1.07999 * 119.99956 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 8 2.7270 -1.6928 -1.1194 6 8 1.7081 -0.2520 -2.4495 7 6 2.2269 -0.9866 -3.5895 8 6 1.7620 -0.3301 -4.8638 9 8 1.0627 0.6598 -4.8160 10 7 2.1241 -0.8423 -6.0567 11 6 1.7017 -0.2448 -7.2161 12 1 1.0784 0.6361 -7.1735 13 6 2.0746 -0.7733 -8.4459 14 7 2.8326 -1.8454 -8.4977 15 14 1.4995 0.0413 -10.0255 16 1 1.9962 1.4400 -10.0705 17 1 2.0304 -0.7098 -11.1914 18 1 0.0152 0.0414 -10.0704 19 6 2.0323 -0.7103 1.2306 20 6 3.3914 -0.8361 1.4496 21 6 3.8521 -1.4872 2.5787 22 6 2.9539 -2.0119 3.4890 23 6 1.5948 -1.8908 3.2672 24 6 1.1340 -1.2360 2.1403 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.3164 -0.9862 -3.5567 32 1 1.8627 -2.0134 -3.5563 33 1 2.6843 -1.6334 -6.0950 34 1 3.0932 -2.2141 -9.3563 35 1 4.0932 -0.4257 0.7386 36 1 4.9139 -1.5858 2.7496 37 1 3.3139 -2.5202 4.3712 38 1 0.8930 -2.3045 3.9762 39 1 0.0722 -1.1381 1.9690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731237829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:44 Heat of formation + Delta-G solvation = -120.221170 kcal Electronic energy + Delta-G solvation = -22634.239434 eV Core-core repulsion = 19120.037198 eV Total energy + Delta-G solvation = -3514.202236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12452 -40.45405 -39.79276 -37.53935 -36.47460 -36.04431 -33.43330 -31.94287 -30.87209 -29.94806 -28.40823 -26.74325 -25.23911 -23.48480 -23.07457 -21.46073 -20.78370 -20.09208 -18.49112 -18.35230 -17.77627 -17.56215 -17.19675 -16.51969 -15.99947 -15.91376 -15.70500 -15.48168 -14.98201 -14.84695 -14.37524 -14.15106 -13.95818 -13.74220 -13.56631 -13.33423 -13.15248 -13.04939 -12.93927 -12.68509 -12.50158 -12.47244 -12.13553 -11.89940 -11.81932 -11.71532 -11.58288 -11.37026 -10.53072 -10.13732 -9.78322 -9.68399 -8.53539 -6.04549 0.35152 0.53307 1.05010 1.36733 1.37062 1.45342 1.55956 1.85137 2.28692 2.85519 3.05840 3.11737 3.35544 3.63508 3.76936 3.89617 4.03930 4.10554 4.16434 4.17260 4.18693 4.29819 4.58058 4.64142 4.70144 4.76169 4.78362 4.83727 5.05644 5.15342 5.16225 5.19621 5.31295 5.35658 5.58472 5.63651 5.66655 5.87116 6.11929 6.43522 6.60630 7.00993 7.37684 7.90897 8.63351 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038125 B = 0.002936 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.255580 B = 9535.281514 C = 9878.417943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 C -0.137 4.137 4 C 0.463 3.537 5 O -0.525 6.525 6 O -0.336 6.336 7 C 0.069 3.931 8 C 0.438 3.562 9 O -0.615 6.615 10 N -0.558 5.558 11 C -0.339 4.339 12 H 0.085 0.915 13 C -0.009 4.009 14 N -0.916 5.916 15 Si 0.999 3.001 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.118 4.118 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.281 0.719 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 0.124 22.667 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.008 4.008 3 C -0.194 4.194 4 C 0.307 3.693 5 O -0.414 6.414 6 O -0.251 6.251 7 C -0.008 4.008 8 C 0.225 3.775 9 O -0.502 6.502 10 N -0.195 5.195 11 C -0.468 4.468 12 H 0.103 0.897 13 C -0.210 4.210 14 N -0.556 5.556 15 Si 0.821 3.179 16 H -0.194 1.194 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.086 4.086 20 C -0.126 4.126 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.135 4.135 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.868 0.363 22.522 22.542 hybrid contribution 0.504 -0.412 -1.276 1.432 sum -0.365 -0.049 21.246 21.250 Atomic orbital electron populations 1.22012 0.89648 1.03502 1.04914 1.19474 0.99134 0.96421 0.85745 1.21917 1.01514 0.91420 1.04592 1.24396 0.77060 0.82783 0.85083 1.90642 1.36532 1.26763 1.87428 1.86554 1.69172 1.54884 1.14494 1.22511 1.00348 0.95660 0.82278 1.20029 0.85573 0.86952 0.84986 1.90520 1.42994 1.29202 1.87437 1.41746 1.45881 1.27804 1.04094 1.19700 1.31397 1.11989 0.83705 0.89656 1.26147 0.96060 0.96514 1.02241 1.69667 1.35521 1.21945 1.28477 0.84909 0.78708 0.78196 0.76069 1.19420 1.19383 1.19398 1.19399 0.94120 1.00291 0.94797 1.21039 0.95007 0.99110 0.97465 1.21363 1.00908 0.98410 0.94300 1.21523 0.93516 0.99090 0.99741 1.21482 0.96312 0.98894 0.97700 1.21419 1.00491 0.97357 0.94282 0.87584 0.91470 0.91613 0.92206 0.91358 0.88294 0.87928 0.87975 0.76646 0.90930 0.87513 0.84644 0.83648 0.83333 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.06 71.98 0.51 -2.40 16 2 C -0.01 -0.16 0.80 -53.67 -0.04 -0.20 16 3 C -0.14 -2.95 8.22 71.98 0.59 -2.36 16 4 C 0.46 15.18 6.42 71.23 0.46 15.64 16 5 O -0.52 -19.08 14.86 21.96 0.33 -18.75 16 6 O -0.34 -12.77 9.56 -45.03 -0.43 -13.20 16 7 C 0.07 2.71 5.94 71.24 0.42 3.14 16 8 C 0.44 21.71 7.86 87.66 0.69 22.40 16 9 O -0.61 -35.10 16.08 15.74 0.25 -34.85 16 10 N -0.56 -28.98 5.29 -306.98 -1.62 -30.61 16 11 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 12 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 13 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 14 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 15 Si 1.00 42.10 29.55 68.60 2.03 44.13 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 C -0.09 -1.98 4.38 -19.86 -0.09 -2.07 16 20 C -0.11 -2.58 7.93 22.27 0.18 -2.40 16 21 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 22 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 23 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 24 C -0.12 -2.21 8.98 22.27 0.20 -2.01 16 25 H 0.11 1.45 7.51 -2.39 -0.02 1.44 16 26 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 27 H 0.06 1.30 7.51 -2.38 -0.02 1.28 16 28 H 0.06 1.29 7.39 -2.39 -0.02 1.27 16 29 H 0.07 1.64 8.11 -2.39 -0.02 1.62 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 3.65 8.13 -2.39 -0.02 3.63 16 32 H 0.10 3.65 8.13 -2.39 -0.02 3.63 16 33 H 0.40 19.63 7.90 -92.70 -0.73 18.90 16 34 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.11 2.68 7.52 -2.91 -0.02 2.66 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.15 2.10 5.90 -2.91 -0.02 2.08 16 Total: -1.00 -70.40 336.62 6.04 -64.36 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.34 Total: 32.15 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.87 Total: 5.50 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.34 Total: -79.33 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: 0.15 Total: -66.80 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -70.40 6.04 -64.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.864 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds