Wall clock time and date at job start Tue Mar 31 2020 06:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47067 * 2 1 4 4 C 1.50694 * 109.47173 * 240.00200 * 2 1 3 5 5 C 1.38371 * 119.84909 * 59.72504 * 4 2 1 6 6 C 1.37938 * 120.15029 * 179.76569 * 5 4 2 7 7 C 1.39650 * 119.84593 * 0.53140 * 6 5 4 8 8 C 1.47732 * 120.14970 * 179.70400 * 7 6 5 9 9 O 1.21590 * 119.99662 * 137.93744 * 8 7 6 10 10 N 1.34771 * 119.99794 * 317.93678 * 8 7 6 11 11 C 1.36873 * 120.00230 * 2.10844 * 10 8 7 12 12 H 1.08003 * 119.99573 * 310.78708 * 11 10 8 13 13 C 1.39044 * 120.00148 * 130.78887 * 11 10 8 14 14 N 1.31364 * 120.00249 * 170.17419 * 13 11 10 15 15 Si 1.86805 * 119.99804 * 350.17887 * 13 11 10 16 16 H 1.48498 * 109.47264 * 95.20581 * 15 13 11 17 17 H 1.48500 * 109.46967 * 215.20287 * 15 13 11 18 18 H 1.48495 * 109.47025 * 335.20236 * 15 13 11 19 19 C 1.46496 * 119.99870 * 182.11481 * 10 8 7 20 20 C 1.50705 * 109.47692 * 84.64783 * 19 10 8 21 21 O 1.20829 * 119.99473 * 0.02562 * 20 19 10 22 22 O 1.34228 * 119.99979 * 180.02562 * 20 19 10 23 23 C 1.39640 * 119.70007 * 359.72016 * 7 6 5 24 24 C 1.37940 * 119.84426 * 0.02562 * 23 7 6 25 25 H 1.08997 * 109.46902 * 59.99820 * 1 2 3 26 26 H 1.08994 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47039 * 300.00095 * 1 2 3 28 28 H 1.09003 * 109.47143 * 119.99804 * 2 1 3 29 29 H 1.08994 * 109.46674 * 299.99907 * 3 2 1 30 30 H 1.09004 * 109.46454 * 59.99654 * 3 2 1 31 31 H 1.08997 * 109.46797 * 179.97438 * 3 2 1 32 32 H 1.07999 * 119.92537 * 359.97438 * 5 4 2 33 33 H 1.07996 * 120.07751 * 180.23007 * 6 5 4 34 34 H 0.96997 * 120.00006 * 179.97438 * 14 13 11 35 35 H 1.09008 * 109.47087 * 204.64788 * 19 10 8 36 36 H 1.09005 * 109.47187 * 324.64475 * 19 10 8 37 37 H 0.96701 * 116.99303 * 180.02562 * 22 20 19 38 38 H 1.07999 * 120.08370 * 179.97438 * 23 7 6 39 39 H 1.08004 * 119.92440 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 1.6915 -0.2382 -2.4856 6 6 2.1518 -0.8807 -3.6161 7 6 2.9544 -2.0167 -3.4916 8 6 3.4457 -2.7139 -4.6978 9 8 4.5927 -3.1149 -4.7434 10 7 2.6226 -2.9055 -5.7476 11 6 1.3447 -2.4163 -5.7135 12 1 0.7174 -2.6042 -4.8546 13 6 0.8542 -1.6777 -6.7846 14 7 -0.4223 -1.3732 -6.8427 15 14 2.0105 -1.1185 -8.1410 16 1 1.9700 -2.0944 -9.2596 17 1 1.5866 0.2168 -8.6335 18 1 3.3939 -1.0333 -7.6082 19 6 3.0955 -3.6374 -6.9252 20 6 2.9268 -5.1177 -6.6980 21 8 2.4590 -5.5199 -5.6591 22 8 3.2963 -5.9892 -7.6497 23 6 3.2903 -2.4908 -2.2218 24 6 2.8274 -1.8354 -1.0998 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.0663 0.6374 -2.5805 33 1 1.8881 -0.5090 -4.5952 34 1 -0.7644 -0.8576 -7.5897 35 1 2.5160 -3.3354 -7.7977 36 1 4.1489 -3.4134 -7.0934 37 1 3.1684 -6.9284 -7.4583 38 1 3.9103 -3.3690 -2.1183 39 1 3.0860 -2.2012 -0.1170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736513204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:36 Heat of formation + Delta-G solvation = -100.208077 kcal Electronic energy + Delta-G solvation = -23554.860587 eV Core-core repulsion = 20041.526183 eV Total energy + Delta-G solvation = -3513.334403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.04542 -39.26317 -38.08444 -35.65023 -34.96790 -34.87894 -32.14076 -30.51478 -29.80019 -27.91109 -27.03842 -25.13251 -23.44128 -22.03080 -21.56243 -19.97951 -19.21787 -17.83842 -17.65867 -16.74324 -15.89439 -15.59534 -15.26544 -15.03880 -14.68309 -14.52164 -13.91337 -13.58656 -13.38198 -13.32747 -13.01986 -12.77008 -12.66988 -12.48491 -12.18751 -12.12963 -11.72558 -11.63808 -11.18105 -11.07001 -10.98103 -10.94659 -10.67324 -10.52485 -10.27574 -10.21559 -9.97095 -9.41974 -8.87915 -8.33243 -8.07122 -7.95373 -6.57797 -4.35213 1.63898 2.03678 2.80187 2.92871 3.08408 3.14357 3.25247 3.76651 3.95750 4.22392 4.46204 4.83174 4.88767 4.99447 5.32443 5.50780 5.55435 5.59051 5.60291 5.70164 5.71629 5.81047 5.88868 5.92189 5.93480 5.99987 6.09703 6.17635 6.34013 6.41200 6.51941 6.65288 6.95556 6.96348 7.11248 7.14131 7.19673 7.55303 7.87439 8.18250 8.44770 8.76403 9.08445 9.42201 10.50381 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.005616 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.056256 B = 4984.989595 C = 5869.539807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.071 4.071 5 C -0.132 4.132 6 C -0.046 4.046 7 C -0.100 4.100 8 C 0.545 3.455 9 O -0.584 6.584 10 N -0.449 5.449 11 C -0.340 4.340 12 H 0.107 0.893 13 C 0.068 3.932 14 N -0.855 5.855 15 Si 0.861 3.139 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.254 1.254 19 C 0.108 3.892 20 C 0.465 3.535 21 O -0.500 6.500 22 O -0.526 6.526 23 C -0.076 4.076 24 C -0.138 4.138 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.278 0.722 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.400 0.600 38 H 0.120 0.880 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 2.331 6.077 7.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.071 4.071 5 C -0.150 4.150 6 C -0.064 4.064 7 C -0.102 4.102 8 C 0.336 3.664 9 O -0.467 6.467 10 N -0.170 5.170 11 C -0.467 4.467 12 H 0.125 0.875 13 C -0.140 4.140 14 N -0.489 5.489 15 Si 0.687 3.313 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.178 1.178 19 C -0.017 4.017 20 C 0.305 3.695 21 O -0.385 6.385 22 O -0.338 6.338 23 C -0.095 4.095 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.164 0.836 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.258 0.742 38 H 0.138 0.862 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.150 2.539 6.140 7.353 hybrid contribution 0.068 -0.541 -0.811 0.978 sum 3.218 1.998 5.329 6.538 Atomic orbital electron populations 1.21856 0.94445 1.02138 1.01698 1.20104 0.95900 0.95841 0.95502 1.21853 1.01132 0.95358 1.01687 1.19885 0.97243 0.95473 0.94492 1.20880 1.01615 1.00835 0.91681 1.21712 0.91674 0.93170 0.99835 1.19696 1.00281 0.97394 0.92853 1.18459 0.84294 0.79676 0.83994 1.90646 1.18678 1.54660 1.82748 1.43224 1.13204 1.46683 1.13888 1.19095 0.87689 1.31955 1.07963 0.87510 1.25509 0.95629 0.95090 0.97810 1.69637 1.12082 1.35838 1.31385 0.87082 0.82663 0.79321 0.82246 1.19427 1.20455 1.17820 1.21361 1.03057 0.84450 0.92788 1.24470 0.73577 0.90500 0.80937 1.90671 1.40476 1.79829 1.27554 1.84572 1.79484 1.21602 1.48110 1.21062 0.98095 0.99107 0.91201 1.20769 1.00440 0.96581 0.97857 0.92151 0.92475 0.92863 0.90905 0.92282 0.92816 0.92642 0.86324 0.83579 0.91144 0.87457 0.87220 0.74244 0.86188 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.00 37.16 0.33 -1.34 16 2 C -0.06 -0.67 3.09 -91.77 -0.28 -0.95 16 3 C -0.14 -1.55 9.01 37.16 0.33 -1.22 16 4 C -0.07 -1.10 4.79 -104.52 -0.50 -1.60 16 5 C -0.13 -2.27 8.69 -39.64 -0.34 -2.62 16 6 C -0.05 -0.92 8.10 -39.16 -0.32 -1.24 16 7 C -0.10 -2.16 5.29 -104.97 -0.55 -2.72 16 8 C 0.54 13.20 7.10 -12.38 -0.09 13.11 16 9 O -0.58 -14.94 16.61 5.29 0.09 -14.85 16 10 N -0.45 -10.81 1.56 -117.21 -0.18 -10.99 16 11 C -0.34 -8.58 6.61 -15.00 -0.10 -8.68 16 12 H 0.11 2.98 7.47 -52.48 -0.39 2.59 16 13 C 0.07 1.69 5.18 -17.45 -0.09 1.60 16 14 N -0.86 -22.30 13.95 55.50 0.77 -21.53 16 15 Si 0.86 18.62 24.86 -169.99 -4.23 14.40 16 16 H -0.27 -5.55 6.91 56.52 0.39 -5.16 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.25 -5.50 7.01 56.52 0.40 -5.10 16 19 C 0.11 2.35 4.39 -5.19 -0.02 2.33 16 20 C 0.47 9.75 8.36 36.01 0.30 10.05 16 21 O -0.50 -12.05 17.07 -18.75 -0.32 -12.37 16 22 O -0.53 -8.54 13.42 -39.25 -0.53 -9.07 16 23 C -0.08 -1.46 9.66 -39.17 -0.38 -1.84 16 24 C -0.14 -2.25 9.65 -39.64 -0.38 -2.63 16 25 H 0.06 0.73 7.36 -51.93 -0.38 0.35 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 29 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.12 1.82 7.08 -52.49 -0.37 1.45 16 33 H 0.15 3.17 6.26 -52.49 -0.33 2.84 16 34 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.11 2.25 4.26 -51.92 -0.22 2.03 16 36 H 0.11 2.23 7.56 -51.93 -0.39 1.83 16 37 H 0.40 4.52 9.10 45.56 0.41 4.94 16 38 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.12 1.56 7.94 -52.48 -0.42 1.14 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -30.64 328.61 -5.68 -36.32 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.15 Total: 10.87 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.09 Total: 2.26 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.59 Total: -32.52 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.76 Total: -36.28 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.23 Total: 14.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.64 -5.68 -36.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736513204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.884 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds