Wall clock time and date at job start Tue Mar 31 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47067 * 2 1 4 4 C 1.50694 * 109.47173 * 240.00200 * 2 1 3 5 5 C 1.38371 * 119.84909 * 59.72504 * 4 2 1 6 6 C 1.37938 * 120.15029 * 179.76569 * 5 4 2 7 7 C 1.39650 * 119.84593 * 0.53140 * 6 5 4 8 8 C 1.47732 * 120.14970 * 179.70400 * 7 6 5 9 9 O 1.21590 * 119.99662 * 137.93744 * 8 7 6 10 10 N 1.34771 * 119.99794 * 317.93678 * 8 7 6 11 11 C 1.36873 * 120.00230 * 2.10844 * 10 8 7 12 12 H 1.08003 * 119.99573 * 310.78708 * 11 10 8 13 13 C 1.39044 * 120.00148 * 130.78887 * 11 10 8 14 14 N 1.31364 * 120.00249 * 170.17419 * 13 11 10 15 15 Si 1.86805 * 119.99804 * 350.17887 * 13 11 10 16 16 H 1.48498 * 109.47264 * 95.20581 * 15 13 11 17 17 H 1.48500 * 109.46967 * 215.20287 * 15 13 11 18 18 H 1.48495 * 109.47025 * 335.20236 * 15 13 11 19 19 C 1.46496 * 119.99870 * 182.11481 * 10 8 7 20 20 C 1.50705 * 109.47692 * 84.64783 * 19 10 8 21 21 O 1.20829 * 119.99473 * 0.02562 * 20 19 10 22 22 O 1.34228 * 119.99979 * 180.02562 * 20 19 10 23 23 C 1.39640 * 119.70007 * 359.72016 * 7 6 5 24 24 C 1.37940 * 119.84426 * 0.02562 * 23 7 6 25 25 H 1.08997 * 109.46902 * 59.99820 * 1 2 3 26 26 H 1.08994 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47039 * 300.00095 * 1 2 3 28 28 H 1.09003 * 109.47143 * 119.99804 * 2 1 3 29 29 H 1.08994 * 109.46674 * 299.99907 * 3 2 1 30 30 H 1.09004 * 109.46454 * 59.99654 * 3 2 1 31 31 H 1.08997 * 109.46797 * 179.97438 * 3 2 1 32 32 H 1.07999 * 119.92537 * 359.97438 * 5 4 2 33 33 H 1.07996 * 120.07751 * 180.23007 * 6 5 4 34 34 H 0.96997 * 120.00006 * 179.97438 * 14 13 11 35 35 H 1.09008 * 109.47087 * 204.64788 * 19 10 8 36 36 H 1.09005 * 109.47187 * 324.64475 * 19 10 8 37 37 H 0.96701 * 116.99303 * 180.02562 * 22 20 19 38 38 H 1.07999 * 120.08370 * 179.97438 * 23 7 6 39 39 H 1.08004 * 119.92440 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 1.6915 -0.2382 -2.4856 6 6 2.1518 -0.8807 -3.6161 7 6 2.9544 -2.0167 -3.4916 8 6 3.4457 -2.7139 -4.6978 9 8 4.5927 -3.1149 -4.7434 10 7 2.6226 -2.9055 -5.7476 11 6 1.3447 -2.4163 -5.7135 12 1 0.7174 -2.6042 -4.8546 13 6 0.8542 -1.6777 -6.7846 14 7 -0.4223 -1.3732 -6.8427 15 14 2.0105 -1.1185 -8.1410 16 1 1.9700 -2.0944 -9.2596 17 1 1.5866 0.2168 -8.6335 18 1 3.3939 -1.0333 -7.6082 19 6 3.0955 -3.6374 -6.9252 20 6 2.9268 -5.1177 -6.6980 21 8 2.4590 -5.5199 -5.6591 22 8 3.2963 -5.9892 -7.6497 23 6 3.2903 -2.4908 -2.2218 24 6 2.8274 -1.8354 -1.0998 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.0663 0.6374 -2.5805 33 1 1.8881 -0.5090 -4.5952 34 1 -0.7644 -0.8576 -7.5897 35 1 2.5160 -3.3354 -7.7977 36 1 4.1489 -3.4134 -7.0934 37 1 3.1684 -6.9284 -7.4583 38 1 3.9103 -3.3690 -2.1183 39 1 3.0860 -2.2012 -0.1170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736513204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:35 Heat of formation + Delta-G solvation = -119.255833 kcal Electronic energy + Delta-G solvation = -23555.686559 eV Core-core repulsion = 20041.526183 eV Total energy + Delta-G solvation = -3514.160376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74919 -40.80447 -39.62913 -37.27492 -36.79137 -36.07432 -34.07331 -31.97398 -31.25706 -29.54208 -27.90676 -27.02331 -24.87961 -23.48191 -23.10739 -21.43225 -20.75203 -19.57368 -19.28871 -18.48292 -17.48335 -17.21185 -16.85389 -16.65858 -16.23365 -16.06669 -15.43678 -15.10381 -14.72166 -14.58436 -14.48435 -14.33771 -14.19931 -14.05517 -13.61479 -13.37602 -13.21199 -13.00093 -12.80541 -12.65431 -12.40767 -12.15137 -12.02955 -11.94012 -11.72877 -11.70964 -11.46423 -11.24014 -10.72137 -9.91963 -9.72492 -9.51279 -8.50814 -6.32812 0.14351 0.58896 1.12547 1.20315 1.32457 1.42281 1.59727 2.10962 2.14252 2.51887 2.81364 3.07138 3.75527 3.86432 3.94007 4.03873 4.17727 4.18417 4.28890 4.34694 4.39287 4.57807 4.60953 4.70877 4.88476 4.99664 5.06484 5.09133 5.19252 5.23171 5.29443 5.40151 5.46448 5.53498 5.55646 5.67351 5.77085 5.99107 6.10290 6.14989 6.84178 6.94749 7.16531 7.53430 8.60912 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.005616 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.056256 B = 4984.989595 C = 5869.539807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.058 4.058 5 C -0.132 4.132 6 C -0.060 4.060 7 C -0.136 4.136 8 C 0.536 3.464 9 O -0.607 6.607 10 N -0.456 5.456 11 C -0.335 4.335 12 H 0.068 0.932 13 C 0.036 3.964 14 N -0.891 5.891 15 Si 0.912 3.088 16 H -0.246 1.246 17 H -0.273 1.273 18 H -0.257 1.257 19 C 0.098 3.902 20 C 0.473 3.527 21 O -0.539 6.539 22 O -0.505 6.505 23 C -0.087 4.087 24 C -0.131 4.131 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.284 0.716 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.426 0.574 38 H 0.117 0.883 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 2.947 6.923 8.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.058 4.058 5 C -0.150 4.150 6 C -0.079 4.079 7 C -0.139 4.139 8 C 0.328 3.672 9 O -0.493 6.493 10 N -0.176 5.176 11 C -0.462 4.462 12 H 0.086 0.914 13 C -0.169 4.169 14 N -0.527 5.527 15 Si 0.735 3.265 16 H -0.170 1.170 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.027 4.027 20 C 0.314 3.686 21 O -0.428 6.428 22 O -0.319 6.319 23 C -0.106 4.106 24 C -0.148 4.148 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.287 0.713 38 H 0.135 0.865 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.587 3.123 6.955 8.426 hybrid contribution -0.085 -0.778 -0.997 1.268 sum 3.502 2.345 5.958 7.298 Atomic orbital electron populations 1.21862 0.93934 1.01783 1.02551 1.20212 0.96204 0.96529 0.94152 1.21848 1.01076 0.94346 1.02616 1.20341 0.95447 0.94749 0.95299 1.21082 1.01266 1.01097 0.91570 1.21541 0.92692 0.93668 0.99998 1.19747 1.02562 0.98599 0.92964 1.18965 0.84097 0.79406 0.84754 1.90594 1.19431 1.55896 1.83334 1.43244 1.12622 1.47149 1.14634 1.18650 0.87616 1.32821 1.07159 0.91441 1.25994 0.96693 0.94596 0.99630 1.69712 1.13598 1.36761 1.32595 0.86277 0.80478 0.79583 0.80175 1.17029 1.19881 1.18064 1.21482 1.03908 0.85231 0.92064 1.24168 0.72793 0.90810 0.80788 1.90665 1.42445 1.80458 1.29254 1.84483 1.78258 1.23167 1.45963 1.21200 0.98557 0.99524 0.91329 1.21160 0.99244 0.96037 0.98385 0.93102 0.93459 0.90290 0.88813 0.92886 0.90452 0.92762 0.84655 0.85895 0.90604 0.86623 0.85834 0.71256 0.86469 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.00 71.98 0.65 -2.32 16 2 C -0.05 -1.11 3.09 -11.54 -0.04 -1.15 16 3 C -0.14 -2.61 9.01 71.99 0.65 -1.97 16 4 C -0.06 -1.71 4.79 -19.80 -0.09 -1.81 16 5 C -0.13 -4.55 8.69 22.23 0.19 -4.35 16 6 C -0.06 -2.56 8.10 22.54 0.18 -2.37 16 7 C -0.14 -6.15 5.29 -20.09 -0.11 -6.26 16 8 C 0.54 26.92 7.10 86.75 0.62 27.54 16 9 O -0.61 -31.92 16.61 -4.00 -0.07 -31.99 16 10 N -0.46 -22.58 1.56 -643.00 -1.00 -23.58 16 11 C -0.33 -17.63 6.61 84.10 0.56 -17.07 16 12 H 0.07 4.03 7.47 -2.91 -0.02 4.01 16 13 C 0.04 1.85 5.18 84.96 0.44 2.29 16 14 N -0.89 -47.52 13.95 21.68 0.30 -47.21 16 15 Si 0.91 38.15 24.86 68.60 1.71 39.85 16 16 H -0.25 -9.36 6.91 99.48 0.69 -8.68 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.26 -10.79 7.01 99.48 0.70 -10.09 16 19 C 0.10 4.22 4.39 85.64 0.38 4.59 16 20 C 0.47 19.63 8.36 71.24 0.60 20.22 16 21 O -0.54 -26.36 17.07 21.95 0.37 -25.99 16 22 O -0.51 -15.34 13.42 -51.40 -0.69 -16.03 16 23 C -0.09 -3.40 9.66 22.54 0.22 -3.18 16 24 C -0.13 -4.03 9.65 22.23 0.21 -3.82 16 25 H 0.05 1.14 7.36 -2.39 -0.02 1.12 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.66 7.87 -2.39 -0.02 1.64 16 29 H 0.05 1.04 7.39 -2.39 -0.02 1.02 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.14 4.10 7.08 -2.91 -0.02 4.08 16 33 H 0.12 5.68 6.26 -2.91 -0.02 5.66 16 34 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.12 4.74 4.26 -2.38 -0.01 4.73 16 36 H 0.12 4.95 7.56 -2.38 -0.02 4.93 16 37 H 0.43 8.55 9.10 -74.06 -0.67 7.88 16 38 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.15 3.57 7.94 -2.91 -0.02 3.55 16 Total: -1.00 -68.63 328.61 5.46 -63.17 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.38 Total: 31.45 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.45 Total: 10.33 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -0.70 Total: -70.79 kcal Atomic # 8 Polarization: -73.63 SS G_CDS: -0.38 Total: -74.01 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.71 Total: 39.85 kcal Total: -68.63 5.46 -63.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736513204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.086 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds