Wall clock time and date at job start Tue Mar 31 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47352 * 2 1 4 4 C 1.38233 * 120.00146 * 269.73106 * 3 2 1 5 5 C 1.38234 * 120.00084 * 179.76232 * 4 3 2 6 6 C 1.38233 * 119.99787 * 0.48587 * 5 4 3 7 7 C 1.50705 * 120.00050 * 179.76775 * 6 5 4 8 8 C 1.50698 * 109.46906 * 270.01895 * 7 6 5 9 9 O 1.21286 * 120.00085 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99573 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00139 * 359.97438 * 10 8 7 12 12 H 1.07996 * 119.99905 * 17.01090 * 11 10 8 13 13 C 1.38951 * 119.99766 * 197.00791 * 11 10 8 14 14 N 1.31410 * 120.00590 * 21.26669 * 13 11 10 15 15 Si 1.86805 * 119.99687 * 201.27027 * 13 11 10 16 16 H 1.48496 * 109.47107 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46912 * 119.99963 * 15 13 11 18 18 H 1.48496 * 109.47115 * 239.99602 * 15 13 11 19 19 C 1.46507 * 119.99827 * 179.97438 * 10 8 7 20 20 C 1.50701 * 109.46982 * 83.98916 * 19 10 8 21 21 O 1.20826 * 120.00135 * 0.02562 * 20 19 10 22 22 O 1.34228 * 119.99833 * 179.97438 * 20 19 10 23 23 C 1.38234 * 120.00243 * 359.78743 * 6 5 4 24 24 C 1.38235 * 119.99787 * 89.99509 * 3 2 1 25 25 H 1.08992 * 109.47427 * 299.99892 * 1 2 3 26 26 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47340 * 60.00008 * 1 2 3 28 28 H 1.09003 * 109.47340 * 119.99992 * 2 1 3 29 29 H 1.09001 * 109.47397 * 240.00213 * 2 1 3 30 30 H 1.08005 * 119.99842 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00076 * 180.24806 * 5 4 3 32 32 H 1.09003 * 109.46959 * 30.01892 * 7 6 5 33 33 H 1.09001 * 109.47097 * 150.01696 * 7 6 5 34 34 H 0.96994 * 120.00814 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47059 * 203.98935 * 19 10 8 36 36 H 1.08998 * 109.46996 * 323.98875 * 19 10 8 37 37 H 0.96702 * 116.99940 * 180.02562 * 22 20 19 38 38 H 1.08002 * 120.00322 * 179.97438 * 23 6 5 39 39 H 1.07997 * 119.99861 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4566 5.4481 0.0001 8 6 4.9635 5.4481 0.0001 9 8 5.5700 4.3978 0.0005 10 7 5.6373 6.6154 -0.0004 11 6 4.9517 7.8027 -0.0014 12 1 3.9071 7.8232 0.2718 13 6 5.6010 8.9795 -0.3539 14 7 6.7021 8.9335 -1.0697 15 14 4.9087 10.6271 0.1899 16 1 3.6707 10.4073 0.9799 17 1 5.9112 11.3330 1.0278 18 1 4.5944 11.4507 -1.0051 19 6 7.1024 6.6154 0.0002 20 6 7.6052 6.4658 -1.4126 21 8 6.8204 6.3695 -2.3262 22 8 8.9250 6.4405 -1.6560 23 6 2.7239 3.3756 1.1972 24 6 2.2627 2.0724 1.1972 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0926 1.5598 -2.1324 31 1 2.9046 3.8845 -2.1324 32 1 3.0932 5.9620 -0.8899 33 1 3.0932 5.9619 0.8901 34 1 7.1556 9.7549 -1.3155 35 1 7.4655 7.5546 0.4175 36 1 7.4655 5.7846 0.6050 37 1 9.1995 6.3432 -2.5781 38 1 2.9040 3.8847 2.1325 39 1 2.0830 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737260226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:15 Heat of formation + Delta-G solvation = -105.184657 kcal Electronic energy + Delta-G solvation = -23130.320808 eV Core-core repulsion = 19616.770603 eV Total energy + Delta-G solvation = -3513.550204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.56385 -39.00122 -37.91242 -35.22788 -34.54532 -34.22164 -31.61361 -30.94224 -30.53423 -28.26749 -26.35516 -24.72191 -23.02520 -22.34362 -21.02453 -20.17259 -19.17494 -17.12480 -16.87938 -16.21573 -15.68146 -15.61572 -15.29092 -14.83326 -14.41272 -14.29019 -14.12898 -13.83383 -13.54577 -13.30375 -12.93998 -12.87967 -12.52919 -11.99161 -11.74320 -11.68349 -11.45936 -11.37994 -11.30255 -10.99534 -10.92485 -10.68664 -10.49372 -10.48041 -10.39841 -10.21233 -9.60833 -9.07347 -8.68297 -8.50456 -8.04118 -7.98928 -6.54363 -4.02751 1.73614 1.82292 3.04824 3.16703 3.20463 3.62062 3.71460 3.99171 4.12335 4.31769 4.75953 4.90236 4.97737 5.01676 5.31396 5.32674 5.37289 5.42289 5.59588 5.74143 5.80999 5.92509 6.01196 6.08729 6.14286 6.15532 6.27403 6.32875 6.48649 6.52162 6.59522 6.68042 6.81136 6.92808 7.12826 7.30655 7.42280 7.54785 7.64382 8.20365 8.95272 9.19593 9.35025 9.76006 10.53544 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.004233 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.627857 B = 6612.412605 C = 7471.759266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.098 4.098 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.048 4.048 7 C -0.086 4.086 8 C 0.475 3.525 9 O -0.594 6.594 10 N -0.433 5.433 11 C -0.337 4.337 12 H 0.105 0.895 13 C 0.037 3.963 14 N -0.869 5.869 15 Si 0.925 3.075 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.282 1.282 19 C 0.158 3.842 20 C 0.498 3.502 21 O -0.509 6.509 22 O -0.536 6.536 23 C -0.106 4.106 24 C -0.120 4.120 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.272 0.728 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.390 0.610 38 H 0.117 0.883 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -8.025 2.977 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.048 4.048 7 C -0.125 4.125 8 C 0.264 3.736 9 O -0.479 6.479 10 N -0.152 5.152 11 C -0.464 4.464 12 H 0.123 0.877 13 C -0.168 4.168 14 N -0.507 5.507 15 Si 0.751 3.249 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.208 1.208 19 C 0.032 3.968 20 C 0.339 3.661 21 O -0.395 6.395 22 O -0.347 6.347 23 C -0.124 4.124 24 C -0.138 4.138 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.246 0.754 38 H 0.135 0.865 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.356 -8.368 3.060 10.945 hybrid contribution 0.061 1.166 -0.675 1.349 sum -6.295 -7.202 2.385 9.858 Atomic orbital electron populations 1.21743 0.95132 1.01191 1.02176 1.20481 0.95816 0.93167 1.02401 1.19739 1.00777 0.95896 0.93365 1.20883 1.00820 0.94848 0.97123 1.21002 0.98593 0.94691 0.97797 1.19560 0.96485 0.95631 0.93149 1.20472 0.94345 0.93236 1.04491 1.20031 0.89083 0.83440 0.81002 1.90563 1.70148 1.31461 1.55710 1.43421 1.03065 1.05524 1.63200 1.19689 0.97088 0.83125 1.46474 0.87700 1.25228 0.96672 1.00101 0.94819 1.69848 1.19550 1.29211 1.32097 0.85907 0.79076 0.81349 0.78565 1.19124 1.20452 1.20810 1.20394 0.82815 1.03715 0.89863 1.23722 0.78688 0.70145 0.93552 1.90551 1.56648 1.45649 1.46609 1.84524 1.28388 1.86710 1.35069 1.20946 0.99144 0.94742 0.97538 1.20859 1.00979 0.94880 0.97064 0.92637 0.92821 0.92632 0.91414 0.91412 0.86732 0.86358 0.88622 0.89124 0.91745 0.86058 0.90105 0.75405 0.86452 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.90 37.16 0.37 -1.00 16 2 C -0.08 -0.89 6.07 -27.88 -0.17 -1.06 16 3 C -0.10 -1.40 5.13 -104.62 -0.54 -1.93 16 4 C -0.12 -1.83 9.70 -39.58 -0.38 -2.21 16 5 C -0.10 -1.82 9.70 -39.58 -0.38 -2.21 16 6 C -0.05 -0.89 4.37 -104.62 -0.46 -1.34 16 7 C -0.09 -1.70 4.28 -29.03 -0.12 -1.83 16 8 C 0.48 11.48 7.41 -10.99 -0.08 11.40 16 9 O -0.59 -15.75 15.72 5.55 0.09 -15.67 16 10 N -0.43 -10.74 2.18 -116.10 -0.25 -11.00 16 11 C -0.34 -8.25 9.14 -14.93 -0.14 -8.39 16 12 H 0.11 2.39 6.56 -52.49 -0.34 2.04 16 13 C 0.04 0.89 4.88 -17.47 -0.09 0.81 16 14 N -0.87 -22.26 9.27 55.50 0.51 -21.74 16 15 Si 0.92 18.84 29.60 -169.99 -5.03 13.80 16 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 C 0.16 3.78 5.14 -5.19 -0.03 3.75 16 20 C 0.50 12.26 6.50 36.01 0.23 12.49 16 21 O -0.51 -14.21 16.77 -18.75 -0.31 -14.53 16 22 O -0.54 -10.90 13.42 -39.25 -0.53 -11.43 16 23 C -0.11 -1.77 9.70 -39.58 -0.38 -2.15 16 24 C -0.12 -1.77 9.70 -39.58 -0.38 -2.16 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.10 1.88 8.04 -51.93 -0.42 1.47 16 33 H 0.09 1.61 7.64 -51.93 -0.40 1.22 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.12 2.88 6.39 -51.93 -0.33 2.54 16 36 H 0.08 1.82 7.61 -51.93 -0.40 1.43 16 37 H 0.39 6.18 9.10 45.56 0.41 6.60 16 38 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -32.06 336.36 -7.41 -39.47 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.40 Total: 11.84 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.55 Total: 4.17 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.26 Total: -32.74 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.75 Total: -41.62 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.06 -7.41 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737260226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.711 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds