Wall clock time and date at job start Tue Mar 31 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47352 * 2 1 4 4 C 1.38233 * 120.00146 * 269.73106 * 3 2 1 5 5 C 1.38234 * 120.00084 * 179.76232 * 4 3 2 6 6 C 1.38233 * 119.99787 * 0.48587 * 5 4 3 7 7 C 1.50705 * 120.00050 * 179.76775 * 6 5 4 8 8 C 1.50698 * 109.46906 * 270.01895 * 7 6 5 9 9 O 1.21286 * 120.00085 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99573 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00139 * 359.97438 * 10 8 7 12 12 H 1.07996 * 119.99905 * 17.01090 * 11 10 8 13 13 C 1.38951 * 119.99766 * 197.00791 * 11 10 8 14 14 N 1.31410 * 120.00590 * 21.26669 * 13 11 10 15 15 Si 1.86805 * 119.99687 * 201.27027 * 13 11 10 16 16 H 1.48496 * 109.47107 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46912 * 119.99963 * 15 13 11 18 18 H 1.48496 * 109.47115 * 239.99602 * 15 13 11 19 19 C 1.46507 * 119.99827 * 179.97438 * 10 8 7 20 20 C 1.50701 * 109.46982 * 83.98916 * 19 10 8 21 21 O 1.20826 * 120.00135 * 0.02562 * 20 19 10 22 22 O 1.34228 * 119.99833 * 179.97438 * 20 19 10 23 23 C 1.38234 * 120.00243 * 359.78743 * 6 5 4 24 24 C 1.38235 * 119.99787 * 89.99509 * 3 2 1 25 25 H 1.08992 * 109.47427 * 299.99892 * 1 2 3 26 26 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47340 * 60.00008 * 1 2 3 28 28 H 1.09003 * 109.47340 * 119.99992 * 2 1 3 29 29 H 1.09001 * 109.47397 * 240.00213 * 2 1 3 30 30 H 1.08005 * 119.99842 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00076 * 180.24806 * 5 4 3 32 32 H 1.09003 * 109.46959 * 30.01892 * 7 6 5 33 33 H 1.09001 * 109.47097 * 150.01696 * 7 6 5 34 34 H 0.96994 * 120.00814 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47059 * 203.98935 * 19 10 8 36 36 H 1.08998 * 109.46996 * 323.98875 * 19 10 8 37 37 H 0.96702 * 116.99940 * 180.02562 * 22 20 19 38 38 H 1.08002 * 120.00322 * 179.97438 * 23 6 5 39 39 H 1.07997 * 119.99861 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4566 5.4481 0.0001 8 6 4.9635 5.4481 0.0001 9 8 5.5700 4.3978 0.0005 10 7 5.6373 6.6154 -0.0004 11 6 4.9517 7.8027 -0.0014 12 1 3.9071 7.8232 0.2718 13 6 5.6010 8.9795 -0.3539 14 7 6.7021 8.9335 -1.0697 15 14 4.9087 10.6271 0.1899 16 1 3.6707 10.4073 0.9799 17 1 5.9112 11.3330 1.0278 18 1 4.5944 11.4507 -1.0051 19 6 7.1024 6.6154 0.0002 20 6 7.6052 6.4658 -1.4126 21 8 6.8204 6.3695 -2.3262 22 8 8.9250 6.4405 -1.6560 23 6 2.7239 3.3756 1.1972 24 6 2.2627 2.0724 1.1972 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0926 1.5598 -2.1324 31 1 2.9046 3.8845 -2.1324 32 1 3.0932 5.9620 -0.8899 33 1 3.0932 5.9619 0.8901 34 1 7.1556 9.7549 -1.3155 35 1 7.4655 7.5546 0.4175 36 1 7.4655 5.7846 0.6050 37 1 9.1995 6.3432 -2.5781 38 1 2.9040 3.8847 2.1325 39 1 2.0830 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737260226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:14 Heat of formation + Delta-G solvation = -123.573617 kcal Electronic energy + Delta-G solvation = -23131.118213 eV Core-core repulsion = 19616.770603 eV Total energy + Delta-G solvation = -3514.347609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.31005 -40.51717 -39.61869 -37.03870 -36.44104 -35.41243 -33.50514 -32.24096 -31.76037 -29.93367 -27.80915 -26.53447 -24.14351 -23.57316 -22.70884 -21.49095 -20.97591 -18.97416 -18.70092 -18.04620 -17.43409 -16.95504 -16.58129 -16.28826 -16.20967 -16.04465 -15.73172 -15.29768 -14.62604 -14.49777 -14.46927 -14.16003 -13.79360 -13.71436 -13.41318 -13.26691 -12.87109 -12.76717 -12.65425 -12.57610 -12.33481 -12.17860 -12.01529 -11.99543 -11.62435 -11.60188 -11.55245 -10.99229 -10.54151 -9.90457 -9.74440 -9.32701 -8.39752 -5.94495 0.48334 0.57823 1.41383 1.50760 1.63711 1.73918 1.85730 2.28635 2.52570 2.77391 3.05321 3.20443 3.86209 3.94315 4.04922 4.19510 4.25314 4.31437 4.52149 4.54941 4.57116 4.63968 4.71361 4.72732 4.81672 4.84555 4.87363 5.10014 5.12286 5.22685 5.28398 5.42713 5.45592 5.57869 5.69501 5.76790 5.81475 5.89812 6.20338 6.32742 7.07063 7.35852 7.48341 7.88753 8.68422 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.004233 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.627857 B = 6612.412605 C = 7471.759266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.094 4.094 4 C -0.125 4.125 5 C -0.125 4.125 6 C -0.075 4.075 7 C -0.075 4.075 8 C 0.463 3.537 9 O -0.624 6.624 10 N -0.442 5.442 11 C -0.355 4.355 12 H 0.118 0.882 13 C -0.005 4.005 14 N -0.898 5.898 15 Si 0.996 3.004 16 H -0.253 1.253 17 H -0.275 1.275 18 H -0.289 1.289 19 C 0.154 3.846 20 C 0.501 3.499 21 O -0.550 6.550 22 O -0.523 6.523 23 C -0.117 4.117 24 C -0.121 4.121 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.272 0.728 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.412 0.588 38 H 0.127 0.873 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 -8.737 4.011 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.094 4.094 4 C -0.143 4.143 5 C -0.143 4.143 6 C -0.076 4.076 7 C -0.115 4.115 8 C 0.254 3.746 9 O -0.512 6.512 10 N -0.161 5.161 11 C -0.481 4.481 12 H 0.136 0.864 13 C -0.207 4.207 14 N -0.536 5.536 15 Si 0.819 3.181 16 H -0.176 1.176 17 H -0.201 1.201 18 H -0.216 1.216 19 C 0.028 3.972 20 C 0.344 3.656 21 O -0.439 6.439 22 O -0.335 6.335 23 C -0.135 4.135 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.271 0.729 38 H 0.144 0.856 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.519 -9.082 4.098 12.483 hybrid contribution 0.506 1.304 -1.039 1.742 sum -7.013 -7.779 3.060 10.911 Atomic orbital electron populations 1.21720 0.93819 1.02462 1.01930 1.20563 0.96822 0.90837 1.03519 1.20191 0.99075 0.97459 0.92661 1.21159 1.00294 0.94030 0.98776 1.21095 0.99972 0.96008 0.97264 1.19571 0.98448 0.95255 0.94304 1.20382 0.91292 0.94862 1.04926 1.20775 0.90834 0.82819 0.80161 1.90516 1.71197 1.32395 1.57068 1.43671 1.03445 1.06017 1.63004 1.20120 0.97930 0.83268 1.46810 0.86409 1.26122 0.96951 1.03265 0.94321 1.69946 1.20818 1.29932 1.32934 0.84834 0.78880 0.76596 0.77750 1.17647 1.20071 1.21571 1.20463 0.83035 1.03866 0.89864 1.23818 0.79404 0.69043 0.93368 1.90528 1.57921 1.47728 1.47714 1.84453 1.26113 1.85871 1.37038 1.21154 0.99337 0.95772 0.97203 1.21227 0.99861 0.94178 0.98616 0.92698 0.90820 0.93122 0.90069 0.90593 0.84711 0.87497 0.89221 0.87332 0.91808 0.86107 0.89361 0.72912 0.85553 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.90 71.98 0.71 -1.54 16 2 C -0.08 -1.51 6.07 29.85 0.18 -1.33 16 3 C -0.09 -2.50 5.13 -19.87 -0.10 -2.60 16 4 C -0.12 -3.74 9.70 22.27 0.22 -3.53 16 5 C -0.13 -4.53 9.70 22.27 0.22 -4.31 16 6 C -0.08 -2.83 4.37 -19.86 -0.09 -2.91 16 7 C -0.08 -3.04 4.28 29.10 0.12 -2.92 16 8 C 0.46 22.88 7.41 87.66 0.65 23.53 16 9 O -0.62 -33.93 15.72 -3.05 -0.05 -33.98 16 10 N -0.44 -22.32 2.18 -639.60 -1.39 -23.71 16 11 C -0.35 -17.42 9.14 84.04 0.77 -16.65 16 12 H 0.12 5.31 6.56 -2.91 -0.02 5.29 16 13 C 0.00 -0.23 4.88 84.93 0.41 0.18 16 14 N -0.90 -46.21 9.27 21.66 0.20 -46.01 16 15 Si 1.00 38.18 29.60 68.60 2.03 40.21 16 16 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 17 H -0.28 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.29 -11.38 7.11 99.48 0.71 -10.68 16 19 C 0.15 7.47 5.14 85.63 0.44 7.91 16 20 C 0.50 24.97 6.50 71.24 0.46 25.43 16 21 O -0.55 -31.38 16.77 21.96 0.37 -31.02 16 22 O -0.52 -21.02 13.42 -51.40 -0.69 -21.71 16 23 C -0.12 -3.82 9.70 22.27 0.22 -3.60 16 24 C -0.12 -3.35 9.70 22.27 0.22 -3.13 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 29 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.11 3.95 8.06 -2.91 -0.02 3.92 16 32 H 0.09 3.66 8.04 -2.39 -0.02 3.64 16 33 H 0.11 3.87 7.64 -2.39 -0.02 3.85 16 34 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 35 H 0.12 5.82 6.39 -2.39 -0.02 5.80 16 36 H 0.09 4.07 7.61 -2.39 -0.02 4.05 16 37 H 0.41 12.69 9.10 -74.06 -0.67 12.02 16 38 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 39 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -69.16 336.36 5.29 -63.87 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: 0.40 Total: 37.82 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 4.43 Total: 14.53 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -1.19 Total: -69.72 kcal Atomic # 8 Polarization: -86.34 SS G_CDS: -0.37 Total: -86.71 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -69.16 5.29 -63.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737260226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.701 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds