Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 N 1.46492 * 109.47381 * 179.97438 * 6 5 4 8 8 S 1.65603 * 119.99905 * 94.99911 * 7 6 5 9 9 O 1.42096 * 104.27759 * 181.06991 * 8 7 6 10 10 O 1.42098 * 104.27655 * 308.92656 * 8 7 6 11 11 C 1.81398 * 104.45023 * 65.00070 * 8 7 6 12 12 C 1.53002 * 109.47374 * 180.02562 * 11 8 7 13 13 C 1.50699 * 109.47041 * 180.02562 * 12 11 8 14 14 H 1.07991 * 120.00560 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99575 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99816 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46827 * 90.00168 * 17 15 13 19 19 H 1.48500 * 109.47344 * 210.00025 * 17 15 13 20 20 H 1.48500 * 109.47476 * 330.00385 * 17 15 13 21 21 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 22 22 C 1.52997 * 109.47445 * 300.00628 * 21 6 5 23 23 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 26 26 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 30 30 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 31 31 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 32 32 H 0.97003 * 120.00149 * 274.99568 * 7 6 5 33 33 H 1.08999 * 109.47076 * 300.00063 * 11 8 7 34 34 H 1.09000 * 109.47424 * 59.99806 * 11 8 7 35 35 H 1.09004 * 109.46784 * 299.99417 * 12 11 8 36 36 H 1.09000 * 109.47257 * 59.99392 * 12 11 8 37 37 H 0.96998 * 120.00968 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46726 * 180.02562 * 21 6 5 39 39 H 1.09002 * 109.46589 * 60.00959 * 21 6 5 40 40 H 1.09002 * 109.47045 * 300.00058 * 22 21 6 41 41 H 1.09000 * 109.47140 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 7 1.5511 -4.2660 0.0005 8 16 2.5000 -5.4804 -0.6056 9 8 1.7045 -6.6495 -0.4659 10 8 2.8934 -5.0109 -1.8878 11 6 3.9255 -5.5428 0.5145 12 6 4.8880 -6.6395 0.0544 13 6 6.0719 -6.6918 0.9854 14 1 6.1321 -6.0107 1.8213 15 6 7.0784 -7.6092 0.7698 16 7 7.0050 -8.4390 -0.2478 17 14 8.5463 -7.6735 1.9234 18 1 8.2622 -8.6179 3.0337 19 1 9.7436 -8.1344 1.1756 20 1 8.7998 -6.3195 2.4779 21 6 1.5299 -2.1637 1.2494 22 6 2.0399 -0.7212 1.2493 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7211 1.8653 -0.7650 27 1 1.6767 -0.2075 -2.1392 28 1 3.1301 -0.7217 -1.2489 29 1 1.8930 -2.6775 -2.1393 30 1 0.4400 -2.1638 -1.2491 31 1 3.1299 -2.8850 0.0002 32 1 0.6716 -4.4691 0.3557 33 1 4.4387 -4.5813 0.5033 34 1 3.5833 -5.7602 1.5263 35 1 4.3750 -7.6012 0.0654 36 1 5.2301 -6.4217 -0.9573 37 1 7.7128 -9.0847 -0.3993 38 1 1.8936 -2.6773 2.1394 39 1 0.4399 -2.1637 1.2493 40 1 3.1300 -0.7212 1.2493 41 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751481594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = -152.962067 kcal Electronic energy + Delta-G solvation = -22248.301997 eV Core-core repulsion = 18868.123960 eV Total energy + Delta-G solvation = -3380.178037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.00889 -36.77483 -36.38938 -35.42780 -33.90057 -33.42770 -31.18847 -31.08216 -29.46976 -26.56460 -25.61305 -23.05231 -22.04952 -21.69933 -19.47349 -18.75621 -17.43550 -17.17125 -16.60507 -16.27993 -15.59628 -15.39519 -14.97816 -14.80622 -14.55370 -14.17877 -13.46088 -13.43844 -13.06303 -12.72323 -12.53559 -12.42987 -12.26112 -11.97340 -11.92492 -11.75628 -11.59314 -11.50763 -11.31104 -11.18179 -11.08821 -10.96941 -10.76334 -10.52277 -10.38501 -10.37547 -9.95540 -9.76441 -9.46232 -9.02935 -8.50787 -6.12886 -4.18544 0.78894 3.10719 3.25924 3.32252 3.34942 3.89110 4.21497 4.36638 4.42186 4.44775 4.65433 4.73670 4.78922 4.91550 5.05244 5.09820 5.18821 5.22467 5.25048 5.32388 5.49886 5.58777 5.64690 5.67849 5.71707 5.81840 5.82913 5.91621 5.95090 6.02531 6.23741 6.29969 6.48148 7.09319 7.29387 7.35539 7.42502 7.80043 8.16945 8.84892 9.46342 10.98152 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.004011 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.197285 B = 6978.641059 C = 7760.002576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.127 3.873 3 O -0.562 6.562 4 C -0.143 4.143 5 C -0.138 4.138 6 C 0.152 3.848 7 N -1.123 6.123 8 S 2.591 3.409 9 O -0.969 6.969 10 O -0.965 6.965 11 C -0.591 4.591 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.125 4.125 22 C -0.104 4.104 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.375 0.625 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.411 0.589 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 17.210 1.360 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.087 3.913 3 O -0.368 6.368 4 C -0.181 4.181 5 C -0.177 4.177 6 C 0.045 3.955 7 N -0.879 5.879 8 S 2.689 3.311 9 O -0.959 6.959 10 O -0.955 6.955 11 C -0.724 4.724 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.164 4.164 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.222 0.778 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.244 0.756 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.177 16.383 0.959 21.047 hybrid contribution 0.478 0.236 0.740 0.912 sum -12.699 16.620 1.699 20.985 Atomic orbital electron populations 1.22594 0.95960 1.03156 1.02191 1.21232 0.92592 0.82001 0.95499 1.86545 1.77368 1.23419 1.49474 1.22212 1.02265 0.96053 0.97613 1.22113 1.01530 0.94756 0.99331 1.20768 0.98854 0.80886 0.95023 1.55906 1.31019 1.19295 1.81656 1.05596 0.76412 0.72717 0.76386 1.93551 1.67576 1.47408 1.87380 1.93540 1.83954 1.80289 1.37692 1.30459 1.16778 1.10224 1.14931 1.18961 0.93310 0.90791 0.98046 1.21001 1.04158 1.18769 1.12075 0.92045 1.25065 0.98521 0.95328 0.95543 1.69949 1.33953 1.20394 1.28554 0.86473 0.81805 0.78424 0.80601 1.20465 1.20998 1.19748 1.21910 1.01724 0.94717 0.98078 1.21411 1.01961 0.94184 0.96656 0.92510 0.90774 0.92008 0.77839 0.91412 0.90609 0.89606 0.91152 0.89525 0.75555 0.86410 0.86081 0.94857 0.94810 0.92520 0.90224 0.90786 0.90658 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.12 37.16 0.30 -0.99 16 2 C 0.13 1.08 1.15 -90.62 -0.10 0.98 16 3 O -0.56 -5.08 12.98 -35.23 -0.46 -5.54 16 4 C -0.14 -1.30 5.07 -26.73 -0.14 -1.43 16 5 C -0.14 -1.45 5.25 -26.73 -0.14 -1.59 16 6 C 0.15 1.66 2.56 -67.93 -0.17 1.49 16 7 N -1.12 -13.70 5.36 -4.89 -0.03 -13.72 16 8 S 2.59 45.07 5.38 -107.50 -0.58 44.49 16 9 O -0.97 -19.85 18.08 -57.54 -1.04 -20.89 16 10 O -0.96 -19.38 17.11 -57.54 -0.98 -20.37 16 11 C -0.59 -11.09 5.90 37.16 0.22 -10.87 16 12 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 13 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.13 -1.08 5.18 -26.73 -0.14 -1.22 16 22 C -0.10 -0.93 5.10 -26.73 -0.14 -1.06 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.52 4.81 -51.93 -0.25 0.27 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.37 2.00 9.05 45.56 0.41 2.41 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.09 7.43 -51.93 -0.39 0.71 16 30 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 31 H 0.09 0.98 7.15 -51.93 -0.37 0.61 16 32 H 0.41 4.10 8.80 -34.47 -0.30 3.80 16 33 H 0.12 1.97 7.44 -51.92 -0.39 1.58 16 34 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -35.18 335.93 -8.89 -44.07 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.72 Total: 3.71 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -0.86 Total: -27.24 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.71 Total: -39.44 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -2.48 Total: -46.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 45.07 SS G_CDS: -0.58 Total: 44.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.18 -8.89 -44.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751481594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.893 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds