Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 N 1.46492 * 109.47381 * 179.97438 * 6 5 4 8 8 S 1.65603 * 119.99905 * 94.99911 * 7 6 5 9 9 O 1.42096 * 104.27759 * 181.06991 * 8 7 6 10 10 O 1.42098 * 104.27655 * 308.92656 * 8 7 6 11 11 C 1.81398 * 104.45023 * 65.00070 * 8 7 6 12 12 C 1.53002 * 109.47374 * 180.02562 * 11 8 7 13 13 C 1.50699 * 109.47041 * 180.02562 * 12 11 8 14 14 H 1.07991 * 120.00560 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99575 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99816 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46827 * 90.00168 * 17 15 13 19 19 H 1.48500 * 109.47344 * 210.00025 * 17 15 13 20 20 H 1.48500 * 109.47476 * 330.00385 * 17 15 13 21 21 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 22 22 C 1.52997 * 109.47445 * 300.00628 * 21 6 5 23 23 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 26 26 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 30 30 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 31 31 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 32 32 H 0.97003 * 120.00149 * 274.99568 * 7 6 5 33 33 H 1.08999 * 109.47076 * 300.00063 * 11 8 7 34 34 H 1.09000 * 109.47424 * 59.99806 * 11 8 7 35 35 H 1.09004 * 109.46784 * 299.99417 * 12 11 8 36 36 H 1.09000 * 109.47257 * 59.99392 * 12 11 8 37 37 H 0.96998 * 120.00968 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46726 * 180.02562 * 21 6 5 39 39 H 1.09002 * 109.46589 * 60.00959 * 21 6 5 40 40 H 1.09002 * 109.47045 * 300.00058 * 22 21 6 41 41 H 1.09000 * 109.47140 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 7 1.5511 -4.2660 0.0005 8 16 2.5000 -5.4804 -0.6056 9 8 1.7045 -6.6495 -0.4659 10 8 2.8934 -5.0109 -1.8878 11 6 3.9255 -5.5428 0.5145 12 6 4.8880 -6.6395 0.0544 13 6 6.0719 -6.6918 0.9854 14 1 6.1321 -6.0107 1.8213 15 6 7.0784 -7.6092 0.7698 16 7 7.0050 -8.4390 -0.2478 17 14 8.5463 -7.6735 1.9234 18 1 8.2622 -8.6179 3.0337 19 1 9.7436 -8.1344 1.1756 20 1 8.7998 -6.3195 2.4779 21 6 1.5299 -2.1637 1.2494 22 6 2.0399 -0.7212 1.2493 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7211 1.8653 -0.7650 27 1 1.6767 -0.2075 -2.1392 28 1 3.1301 -0.7217 -1.2489 29 1 1.8930 -2.6775 -2.1393 30 1 0.4400 -2.1638 -1.2491 31 1 3.1299 -2.8850 0.0002 32 1 0.6716 -4.4691 0.3557 33 1 4.4387 -4.5813 0.5033 34 1 3.5833 -5.7602 1.5263 35 1 4.3750 -7.6012 0.0654 36 1 5.2301 -6.4217 -0.9573 37 1 7.7128 -9.0847 -0.3993 38 1 1.8936 -2.6773 2.1394 39 1 0.4399 -2.1637 1.2493 40 1 3.1300 -0.7212 1.2493 41 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751481594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -181.609899 kcal Electronic energy + Delta-G solvation = -22249.544260 eV Core-core repulsion = 18868.123960 eV Total energy + Delta-G solvation = -3381.420300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73158 -38.15962 -37.36869 -36.97032 -35.89590 -34.30102 -33.12898 -31.82620 -30.20227 -27.60180 -27.26502 -23.78091 -23.61937 -22.86512 -20.47819 -19.91136 -19.03248 -18.22021 -17.83200 -17.49289 -16.99190 -16.53203 -16.43917 -16.04119 -15.63290 -15.13683 -14.94196 -14.47485 -14.31538 -13.84561 -13.74597 -13.49200 -13.24295 -13.18762 -13.12230 -13.02554 -12.92976 -12.78390 -12.70565 -12.55597 -12.25095 -12.13748 -12.08120 -12.02990 -11.74704 -11.54072 -11.29331 -11.01660 -10.65024 -10.62420 -10.27498 -8.26168 -6.40209 -0.66394 1.40901 1.42605 1.53729 1.84968 2.37936 2.81265 3.07353 3.24758 3.32479 3.65175 3.73834 3.94973 4.03867 4.07120 4.13447 4.16647 4.30197 4.38973 4.44901 4.54297 4.68665 4.75981 4.84702 4.91806 5.07064 5.12613 5.14011 5.21152 5.23511 5.27404 5.27881 5.33226 5.44857 5.57630 5.68327 6.06151 6.18553 6.73564 6.94783 7.30096 8.86129 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.004011 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.197285 B = 6978.641059 C = 7760.002576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.128 3.872 3 O -0.578 6.578 4 C -0.140 4.140 5 C -0.138 4.138 6 C 0.141 3.859 7 N -1.101 6.101 8 S 2.619 3.381 9 O -1.000 7.000 10 O -0.994 6.994 11 C -0.591 4.591 12 C 0.020 3.980 13 C -0.539 4.539 14 H 0.076 0.924 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.258 1.258 21 C -0.118 4.118 22 C -0.107 4.107 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.389 0.611 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.426 0.574 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.006 0.994 36 H 0.007 0.993 37 H 0.267 0.733 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 19.082 3.047 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 O -0.386 6.386 4 C -0.179 4.179 5 C -0.178 4.178 6 C 0.035 3.965 7 N -0.861 5.861 8 S 2.716 3.284 9 O -0.991 6.991 10 O -0.983 6.983 11 C -0.723 4.723 12 C -0.019 4.019 13 C -0.578 4.578 14 H 0.094 0.906 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.182 1.182 21 C -0.157 4.157 22 C -0.145 4.145 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.239 0.761 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.263 0.737 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.982 18.265 2.653 23.154 hybrid contribution 0.668 -0.264 0.173 0.739 sum -13.313 18.001 2.826 22.567 Atomic orbital electron populations 1.22560 0.94550 1.03584 1.02879 1.21212 0.93567 0.81734 0.94683 1.86511 1.77823 1.23707 1.50608 1.22191 1.01418 0.95386 0.98878 1.22095 1.02584 0.95242 0.97836 1.21050 0.98826 0.79906 0.96757 1.55358 1.30799 1.18723 1.81244 1.04474 0.75805 0.72592 0.75566 1.93501 1.68131 1.49768 1.87658 1.93506 1.84544 1.80832 1.39462 1.30364 1.16595 1.08839 1.16463 1.18819 0.94402 0.91900 0.96783 1.21522 1.04836 1.18853 1.12604 0.90621 1.26110 1.01956 0.94897 0.97227 1.70096 1.35218 1.21389 1.30694 0.85322 0.77558 0.79155 0.78281 1.19578 1.20858 1.18156 1.21879 1.02860 0.94161 0.96781 1.21441 1.01332 0.94429 0.97303 0.91485 0.90399 0.91763 0.76111 0.90045 0.92033 0.92226 0.89410 0.90167 0.73688 0.84283 0.83829 0.97565 0.97508 0.92393 0.89435 0.88884 0.91848 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.12 71.98 0.58 -1.41 16 2 C 0.13 1.89 1.15 -10.79 -0.01 1.88 16 3 O -0.58 -9.27 12.98 -148.98 -1.93 -11.20 16 4 C -0.14 -2.33 5.07 30.59 0.16 -2.18 16 5 C -0.14 -2.70 5.25 30.59 0.16 -2.54 16 6 C 0.14 2.83 2.56 44.99 0.12 2.95 16 7 N -1.10 -24.96 5.36 -169.39 -0.91 -25.87 16 8 S 2.62 90.86 5.38 -56.49 -0.30 90.56 16 9 O -1.00 -41.14 18.08 -127.65 -2.31 -43.45 16 10 O -0.99 -40.58 17.11 -127.65 -2.18 -42.77 16 11 C -0.59 -21.97 5.90 71.98 0.42 -21.54 16 12 C 0.02 1.04 4.98 29.85 0.15 1.18 16 13 C -0.54 -29.87 9.11 25.60 0.23 -29.63 16 14 H 0.08 3.86 7.74 -2.92 -0.02 3.84 16 15 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 16 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 17 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 21 C -0.12 -1.69 5.18 30.60 0.16 -1.54 16 22 C -0.11 -1.66 5.10 30.59 0.16 -1.50 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.08 0.81 4.81 -2.39 -0.01 0.80 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.39 3.33 9.05 -74.06 -0.67 2.66 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.49 7.43 -2.39 -0.02 1.48 16 30 H 0.09 1.39 6.43 -2.39 -0.02 1.37 16 31 H 0.08 1.72 7.15 -2.39 -0.02 1.71 16 32 H 0.43 7.43 8.80 -96.74 -0.85 6.58 16 33 H 0.14 4.52 7.44 -2.39 -0.02 4.50 16 34 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.01 6.43 -2.39 -0.02 1.00 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -76.96 335.93 -3.22 -80.18 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.48 Total: 18.00 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 2.59 Total: -54.06 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -0.62 Total: -82.56 kcal Atomic # 8 Polarization: -90.99 SS G_CDS: -6.43 Total: -97.42 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 90.86 SS G_CDS: -0.30 Total: 90.56 kcal Total: -76.96 -3.22 -80.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751481594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.426 kcal (2) G-P(sol) polarization free energy of solvation -76.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds