Wall clock time and date at job start Tue Mar 31 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47253 * 2 1 4 4 C 1.38022 * 119.51285 * 124.99688 * 3 2 1 5 5 C 1.39965 * 119.12263 * 180.27185 * 4 3 2 6 6 C 1.48062 * 120.89191 * 179.70345 * 5 4 3 7 7 O 1.21435 * 120.00307 * 357.75927 * 6 5 4 8 8 O 1.34672 * 120.00237 * 177.75900 * 6 5 4 9 9 C 1.45200 * 117.00112 * 185.49057 * 8 6 5 10 10 C 1.53004 * 109.46698 * 179.31451 * 9 8 6 11 11 C 1.50695 * 115.55197 * 305.79071 * 10 9 8 12 12 H 1.08001 * 120.00128 * 144.65783 * 11 10 9 13 13 C 1.37875 * 119.99962 * 324.65341 * 11 10 9 14 14 N 1.31515 * 120.00452 * 346.19673 * 13 11 10 15 15 Si 1.86803 * 120.00143 * 166.19226 * 13 11 10 16 16 H 1.48498 * 109.46868 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47158 * 120.00162 * 15 13 11 18 18 H 1.48495 * 109.47347 * 240.00654 * 15 13 11 19 19 C 1.53004 * 117.49631 * 160.11907 * 10 9 8 20 20 C 1.53002 * 117.49758 * 91.46581 * 10 9 8 21 21 C 1.39651 * 118.21368 * 359.49140 * 5 4 3 22 22 C 1.38856 * 118.93770 * 0.50878 * 21 5 4 23 23 O 1.35681 * 119.62051 * 179.72748 * 22 21 5 24 24 N 1.31878 * 119.50843 * 305.02047 * 3 2 1 25 25 H 1.09002 * 109.46594 * 60.00138 * 1 2 3 26 26 H 1.08994 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46945 * 300.00431 * 1 2 3 28 28 H 1.08994 * 109.46802 * 239.99481 * 2 1 3 29 29 H 1.08999 * 109.46896 * 119.99423 * 2 1 3 30 30 H 1.07995 * 120.43111 * 0.02562 * 4 3 2 31 31 H 1.08995 * 109.47156 * 299.31541 * 9 8 6 32 32 H 1.09000 * 109.46980 * 59.31805 * 9 8 6 33 33 H 0.96998 * 120.00425 * 185.09267 * 14 13 11 34 34 H 1.09005 * 117.49630 * 0.02562 * 19 10 9 35 35 H 1.08994 * 117.49989 * 145.01887 * 19 10 9 36 36 H 1.09001 * 117.49740 * 214.97698 * 20 10 9 37 37 H 1.08999 * 117.49830 * 359.96602 * 20 10 9 38 38 H 1.07993 * 120.53525 * 180.21566 * 21 5 4 39 39 H 0.96696 * 114.00207 * 270.02301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3655 3.1551 0.9795 6 6 4.3007 3.6399 2.0199 7 8 4.6498 2.8982 2.9159 8 8 4.7644 4.9034 1.9728 9 6 5.7705 5.2734 2.9521 10 6 6.1843 6.7299 2.7327 11 6 6.6456 7.0718 1.3394 12 1 6.4196 8.0403 0.9182 13 6 7.3561 6.1483 0.6025 14 7 7.8656 5.0885 1.1914 15 14 7.5951 6.4022 -1.2327 16 1 6.9292 7.6626 -1.6489 17 1 9.0463 6.4862 -1.5360 18 1 7.0001 5.2601 -1.9721 19 6 6.8592 7.4558 3.8984 20 6 5.4211 7.8056 3.5082 21 6 2.9191 4.0044 -0.0353 22 6 2.0374 3.5089 -0.9867 23 8 1.5905 4.3234 -1.9755 24 7 1.6280 2.2528 -0.9399 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.2340 1.1434 1.7494 31 1 5.3602 5.1594 3.9554 32 1 6.6413 4.6274 2.8401 33 1 8.4272 4.4775 0.6892 34 1 7.0087 6.8955 4.8213 35 1 7.6365 8.1808 3.6574 36 1 5.2528 8.7607 3.0106 37 1 4.6237 7.4757 4.1741 38 1 3.2505 5.0313 -0.0768 39 1 0.7789 4.8008 -1.7553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755708965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:57 Heat of formation + Delta-G solvation = -68.155838 kcal Electronic energy + Delta-G solvation = -23104.911285 eV Core-core repulsion = 19592.966771 eV Total energy + Delta-G solvation = -3511.944514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.76379 -39.39689 -37.36785 -36.79412 -35.18682 -34.05898 -32.26402 -32.21487 -29.51482 -27.00346 -25.56469 -24.93851 -23.73042 -22.41196 -21.30106 -20.19631 -19.26782 -18.62103 -17.25284 -16.89414 -16.31115 -15.83915 -15.72577 -15.51595 -14.94944 -14.64551 -14.42322 -14.26941 -13.81465 -13.38278 -13.04489 -12.59644 -12.21535 -12.07013 -11.98029 -11.82427 -11.67844 -11.59014 -11.20087 -11.01535 -10.87966 -10.54560 -10.40947 -10.29710 -9.88403 -9.71939 -9.59005 -9.42396 -9.18851 -8.86284 -8.83184 -8.17394 -6.13144 -4.14775 0.65097 0.93283 2.83673 3.20423 3.24135 3.34585 3.37159 3.44090 3.77059 4.32360 4.35167 4.74423 4.88441 4.93802 5.00597 5.11118 5.21355 5.26752 5.38084 5.47233 5.65481 5.70851 5.77772 5.92593 5.94113 6.09205 6.09973 6.15693 6.36851 6.38259 6.52617 6.58739 6.70616 6.89015 7.19031 7.28606 7.33373 7.41822 7.80114 7.83310 8.25859 8.39131 8.79995 9.45117 10.89761 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.004941 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.105867 B = 5665.205926 C = 6360.072858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C 0.142 3.858 4 C -0.124 4.124 5 C -0.046 4.046 6 C 0.501 3.499 7 O -0.511 6.511 8 O -0.317 6.317 9 C 0.114 3.886 10 C 0.047 3.953 11 C -0.485 4.485 12 H 0.064 0.936 13 C 0.077 3.923 14 N -0.882 5.882 15 Si 0.891 3.109 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.281 1.281 19 C -0.191 4.191 20 C -0.209 4.209 21 C -0.132 4.132 22 C 0.305 3.695 23 O -0.476 6.476 24 N -0.485 5.485 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.032 0.968 32 H 0.114 0.886 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.162 0.838 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.806 -6.558 -1.206 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C 0.005 3.995 4 C -0.144 4.144 5 C -0.055 4.055 6 C 0.344 3.656 7 O -0.402 6.402 8 O -0.230 6.230 9 C 0.042 3.958 10 C 0.047 3.953 11 C -0.522 4.522 12 H 0.082 0.918 13 C -0.127 4.127 14 N -0.519 5.519 15 Si 0.718 3.282 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.206 1.206 19 C -0.229 4.229 20 C -0.246 4.246 21 C -0.153 4.153 22 C 0.126 3.874 23 O -0.283 6.283 24 N -0.205 5.205 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.169 0.831 31 H 0.050 0.950 32 H 0.132 0.868 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.180 0.820 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -12.694 -7.339 -1.932 14.790 hybrid contribution 0.559 0.716 -0.015 0.909 sum -12.136 -6.622 -1.947 13.961 Atomic orbital electron populations 1.21677 0.94023 1.01737 1.02672 1.20506 0.97075 0.89745 1.03586 1.20879 0.93421 0.95895 0.89352 1.22123 0.96902 0.95207 1.00210 1.19610 0.96785 0.94131 0.94968 1.20832 0.79412 0.81811 0.83558 1.90764 1.57401 1.56933 1.35106 1.86521 1.53479 1.26583 1.56465 1.22912 0.89098 0.98365 0.85450 1.18871 0.96886 0.86816 0.92741 1.20442 1.35150 1.00342 0.96216 0.91771 1.24917 0.94684 0.94620 0.98451 1.69801 1.31667 1.14249 1.36223 0.86549 0.77813 0.78563 0.85274 1.19426 1.21005 1.20646 1.22969 0.94683 1.05190 1.00021 1.22972 0.93976 1.01969 1.05681 1.22611 0.97537 1.02868 0.92280 1.18954 0.93839 0.87173 0.87399 1.84825 1.46704 1.58092 1.38687 1.66709 1.25824 1.04043 1.23936 0.91584 0.92262 0.92830 0.89708 0.89822 0.83089 0.95019 0.86838 0.92652 0.91438 0.89684 0.90226 0.91274 0.82017 0.74291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.77 37.16 0.36 -0.88 16 2 C -0.07 -0.69 6.33 -27.88 -0.18 -0.87 16 3 C 0.14 1.90 6.18 -82.65 -0.51 1.39 16 4 C -0.12 -1.84 9.27 -39.01 -0.36 -2.20 16 5 C -0.05 -0.80 5.90 -104.69 -0.62 -1.42 16 6 C 0.50 10.49 7.92 34.76 0.28 10.77 16 7 O -0.51 -11.42 16.23 -19.22 -0.31 -11.73 16 8 O -0.32 -7.30 9.25 -40.42 -0.37 -7.67 16 9 C 0.11 2.75 4.60 37.16 0.17 2.92 16 10 C 0.05 1.15 2.10 -155.66 -0.33 0.82 16 11 C -0.48 -12.83 8.76 -34.44 -0.30 -13.14 16 12 H 0.06 1.70 7.85 -52.49 -0.41 1.28 16 13 C 0.08 2.04 5.16 -17.82 -0.09 1.95 16 14 N -0.88 -24.23 10.91 55.43 0.60 -23.62 16 15 Si 0.89 20.93 29.56 -169.99 -5.03 15.90 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.19 -4.16 9.96 -26.69 -0.27 -4.42 16 20 C -0.21 -4.39 9.92 -26.70 -0.26 -4.65 16 21 C -0.13 -2.15 9.64 -38.83 -0.37 -2.53 16 22 C 0.31 4.57 7.74 -17.17 -0.13 4.43 16 23 O -0.48 -6.19 13.56 -18.75 -0.25 -6.44 16 24 N -0.48 -7.09 9.87 -9.60 -0.09 -7.18 16 25 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 30 H 0.15 2.03 7.63 -52.49 -0.40 1.63 16 31 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.11 3.02 6.07 -51.93 -0.32 2.71 16 33 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.16 2.69 7.71 -52.49 -0.40 2.29 16 39 H 0.40 2.94 9.06 45.56 0.41 3.36 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -30.85 341.42 -7.38 -38.23 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.45 Total: 5.21 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.62 Total: -7.84 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.51 Total: -30.81 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.94 Total: -25.85 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.85 -7.38 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755708965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.922 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds