Wall clock time and date at job start Tue Mar 31 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47253 * 2 1 4 4 C 1.38022 * 119.51285 * 124.99688 * 3 2 1 5 5 C 1.39965 * 119.12263 * 180.27185 * 4 3 2 6 6 C 1.48062 * 120.89191 * 179.70345 * 5 4 3 7 7 O 1.21435 * 120.00307 * 357.75927 * 6 5 4 8 8 O 1.34672 * 120.00237 * 177.75900 * 6 5 4 9 9 C 1.45200 * 117.00112 * 185.49057 * 8 6 5 10 10 C 1.53004 * 109.46698 * 179.31451 * 9 8 6 11 11 C 1.50695 * 115.55197 * 305.79071 * 10 9 8 12 12 H 1.08001 * 120.00128 * 144.65783 * 11 10 9 13 13 C 1.37875 * 119.99962 * 324.65341 * 11 10 9 14 14 N 1.31515 * 120.00452 * 346.19673 * 13 11 10 15 15 Si 1.86803 * 120.00143 * 166.19226 * 13 11 10 16 16 H 1.48498 * 109.46868 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47158 * 120.00162 * 15 13 11 18 18 H 1.48495 * 109.47347 * 240.00654 * 15 13 11 19 19 C 1.53004 * 117.49631 * 160.11907 * 10 9 8 20 20 C 1.53002 * 117.49758 * 91.46581 * 10 9 8 21 21 C 1.39651 * 118.21368 * 359.49140 * 5 4 3 22 22 C 1.38856 * 118.93770 * 0.50878 * 21 5 4 23 23 O 1.35681 * 119.62051 * 179.72748 * 22 21 5 24 24 N 1.31878 * 119.50843 * 305.02047 * 3 2 1 25 25 H 1.09002 * 109.46594 * 60.00138 * 1 2 3 26 26 H 1.08994 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46945 * 300.00431 * 1 2 3 28 28 H 1.08994 * 109.46802 * 239.99481 * 2 1 3 29 29 H 1.08999 * 109.46896 * 119.99423 * 2 1 3 30 30 H 1.07995 * 120.43111 * 0.02562 * 4 3 2 31 31 H 1.08995 * 109.47156 * 299.31541 * 9 8 6 32 32 H 1.09000 * 109.46980 * 59.31805 * 9 8 6 33 33 H 0.96998 * 120.00425 * 185.09267 * 14 13 11 34 34 H 1.09005 * 117.49630 * 0.02562 * 19 10 9 35 35 H 1.08994 * 117.49989 * 145.01887 * 19 10 9 36 36 H 1.09001 * 117.49740 * 214.97698 * 20 10 9 37 37 H 1.08999 * 117.49830 * 359.96602 * 20 10 9 38 38 H 1.07993 * 120.53525 * 180.21566 * 21 5 4 39 39 H 0.96696 * 114.00207 * 270.02301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3655 3.1551 0.9795 6 6 4.3007 3.6399 2.0199 7 8 4.6498 2.8982 2.9159 8 8 4.7644 4.9034 1.9728 9 6 5.7705 5.2734 2.9521 10 6 6.1843 6.7299 2.7327 11 6 6.6456 7.0718 1.3394 12 1 6.4196 8.0403 0.9182 13 6 7.3561 6.1483 0.6025 14 7 7.8656 5.0885 1.1914 15 14 7.5951 6.4022 -1.2327 16 1 6.9292 7.6626 -1.6489 17 1 9.0463 6.4862 -1.5360 18 1 7.0001 5.2601 -1.9721 19 6 6.8592 7.4558 3.8984 20 6 5.4211 7.8056 3.5082 21 6 2.9191 4.0044 -0.0353 22 6 2.0374 3.5089 -0.9867 23 8 1.5905 4.3234 -1.9755 24 7 1.6280 2.2528 -0.9399 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.2340 1.1434 1.7494 31 1 5.3602 5.1594 3.9554 32 1 6.6413 4.6274 2.8401 33 1 8.4272 4.4775 0.6892 34 1 7.0087 6.8955 4.8213 35 1 7.6365 8.1808 3.6574 36 1 5.2528 8.7607 3.0106 37 1 4.6237 7.4757 4.1741 38 1 3.2505 5.0313 -0.0768 39 1 0.7789 4.8008 -1.7553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755708965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:57 Heat of formation + Delta-G solvation = -88.118700 kcal Electronic energy + Delta-G solvation = -23105.776940 eV Core-core repulsion = 19592.966771 eV Total energy + Delta-G solvation = -3512.810169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03552 -40.96544 -38.69363 -38.30105 -36.93650 -35.07753 -34.21996 -33.38645 -30.55336 -28.74834 -27.51052 -26.21577 -24.89639 -23.52041 -23.00055 -21.53657 -21.15786 -19.83459 -18.80832 -18.45545 -17.75025 -17.38333 -17.20712 -16.82774 -16.56737 -16.37202 -15.55312 -15.25156 -15.21899 -14.95569 -14.26639 -13.97795 -13.88899 -13.66739 -13.43309 -12.95528 -12.91145 -12.85227 -12.77518 -12.38906 -12.35917 -12.15033 -11.99209 -11.92709 -11.52743 -11.38412 -11.14302 -11.11453 -10.71104 -10.64911 -10.08530 -9.98054 -8.13790 -6.20249 -0.66064 -0.20730 1.34332 1.35523 1.42051 1.50208 1.66871 2.33895 2.37682 2.55021 2.97172 3.27328 3.45410 3.66871 3.75680 3.79914 4.11830 4.16608 4.25740 4.30437 4.38495 4.42173 4.54332 4.62914 4.70593 4.81037 4.86432 4.91601 4.97234 5.08543 5.16447 5.20385 5.27561 5.35971 5.46809 5.50472 5.58670 5.79003 6.30502 6.49517 6.65624 6.72559 6.79547 7.41144 8.87543 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.004941 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.105867 B = 5665.205926 C = 6360.072858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C 0.151 3.849 4 C -0.123 4.123 5 C -0.065 4.065 6 C 0.497 3.503 7 O -0.532 6.532 8 O -0.329 6.329 9 C 0.123 3.877 10 C 0.008 3.992 11 C -0.497 4.497 12 H 0.058 0.942 13 C 0.037 3.963 14 N -0.906 5.906 15 Si 0.941 3.059 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.287 1.287 19 C -0.184 4.184 20 C -0.184 4.184 21 C -0.144 4.144 22 C 0.313 3.687 23 O -0.482 6.482 24 N -0.488 5.488 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.260 0.740 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -7.165 -1.683 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C 0.013 3.987 4 C -0.143 4.143 5 C -0.073 4.073 6 C 0.343 3.657 7 O -0.424 6.424 8 O -0.243 6.243 9 C 0.050 3.950 10 C 0.008 3.992 11 C -0.534 4.534 12 H 0.076 0.924 13 C -0.163 4.163 14 N -0.545 5.545 15 Si 0.767 3.233 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.213 1.213 19 C -0.222 4.222 20 C -0.222 4.222 21 C -0.165 4.165 22 C 0.134 3.866 23 O -0.293 6.293 24 N -0.209 5.209 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.181 0.819 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.169 0.831 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -14.255 -7.912 -2.411 16.481 hybrid contribution 0.961 0.894 0.132 1.319 sum -13.294 -7.018 -2.279 15.205 Atomic orbital electron populations 1.21656 0.93043 1.03039 1.01989 1.20701 0.97806 0.87287 1.05164 1.21502 0.91938 0.97255 0.87960 1.22325 0.96888 0.94158 1.00940 1.19532 0.97392 0.95609 0.94800 1.21444 0.79340 0.80947 0.84015 1.90732 1.58385 1.57085 1.36198 1.86521 1.53374 1.27970 1.56459 1.22643 0.88408 0.97801 0.86165 1.18992 0.99727 0.87791 0.92729 1.20675 1.34924 1.00120 0.97651 0.92384 1.25491 0.94760 0.94583 1.01503 1.69932 1.32445 1.14944 1.37144 0.85762 0.77793 0.78336 0.81430 1.18635 1.20556 1.21312 1.22970 0.95319 1.04495 0.99411 1.22992 0.93998 1.00832 1.04332 1.22533 0.98594 1.02435 0.92987 1.18934 0.93207 0.87546 0.86951 1.84765 1.48340 1.58145 1.38033 1.66884 1.25832 1.03893 1.24290 0.92729 0.90010 0.93045 0.88669 0.87674 0.81888 0.94004 0.89909 0.93003 0.89974 0.89959 0.89555 0.89263 0.83051 0.71454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.77 71.98 0.70 -1.32 16 2 C -0.07 -1.19 6.33 29.85 0.19 -1.00 16 3 C 0.15 3.75 6.18 42.50 0.26 4.01 16 4 C -0.12 -3.51 9.27 22.64 0.21 -3.30 16 5 C -0.06 -2.26 5.90 -19.91 -0.12 -2.38 16 6 C 0.50 21.28 7.92 70.43 0.56 21.84 16 7 O -0.53 -24.21 16.23 20.05 0.33 -23.89 16 8 O -0.33 -15.51 9.25 -55.81 -0.52 -16.02 16 9 C 0.12 6.00 4.60 71.98 0.33 6.33 16 10 C 0.01 0.39 2.10 -52.93 -0.11 0.28 16 11 C -0.50 -26.49 8.76 25.60 0.22 -26.27 16 12 H 0.06 3.08 7.85 -2.91 -0.02 3.05 16 13 C 0.04 2.00 5.16 84.65 0.44 2.43 16 14 N -0.91 -50.89 10.91 21.45 0.23 -50.65 16 15 Si 0.94 43.31 29.56 68.60 2.03 45.34 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 19 C -0.18 -7.85 9.96 30.62 0.30 -7.55 16 20 C -0.18 -7.46 9.92 30.62 0.30 -7.16 16 21 C -0.14 -4.72 9.64 22.76 0.22 -4.50 16 22 C 0.31 9.01 7.74 84.79 0.66 9.67 16 23 O -0.48 -11.80 13.56 -89.99 -1.22 -13.02 16 24 N -0.49 -13.44 9.87 -297.17 -2.93 -16.37 16 25 H 0.05 0.92 7.94 -2.39 -0.02 0.91 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 1.31 7.86 -2.39 -0.02 1.29 16 30 H 0.16 4.17 7.63 -2.91 -0.02 4.14 16 31 H 0.04 1.89 8.05 -2.39 -0.02 1.87 16 32 H 0.08 4.55 6.07 -2.39 -0.01 4.54 16 33 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 34 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 35 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.15 5.18 7.71 -2.91 -0.02 5.16 16 39 H 0.42 5.47 9.06 -74.06 -0.67 4.80 16 Total: -1.00 -66.12 341.42 2.49 -63.63 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.40 Total: 19.90 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 4.17 Total: -8.91 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -2.70 Total: -67.02 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.41 Total: -52.93 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.12 2.49 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755708965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.486 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds