Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38375 * 119.40245 * 2 1 4 4 C 1.38316 * 119.46577 * 180.25446 * 3 2 1 5 5 C 1.50703 * 120.82480 * 179.72711 * 4 3 2 6 6 C 1.40046 * 118.34135 * 359.45474 * 4 3 2 7 7 C 1.47392 * 120.59879 * 180.25359 * 6 4 3 8 8 O 1.21510 * 119.99764 * 90.00226 * 7 6 4 9 9 O 1.34743 * 120.00022 * 269.99802 * 7 6 4 10 10 C 1.45199 * 117.00221 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.50705 * 115.54840 * 65.11060 * 11 10 9 13 13 H 1.08005 * 119.99574 * 266.10424 * 12 11 10 14 14 C 1.37871 * 120.00164 * 86.10922 * 12 11 10 15 15 N 1.31513 * 120.00244 * 353.69332 * 14 12 11 16 16 Si 1.86795 * 119.99895 * 173.70239 * 14 12 11 17 17 H 1.48506 * 109.47378 * 89.99596 * 16 14 12 18 18 H 1.48500 * 109.47350 * 209.99652 * 16 14 12 19 19 H 1.48500 * 109.47450 * 329.99766 * 16 14 12 20 20 C 1.53001 * 117.50104 * 279.43378 * 11 10 9 21 21 C 1.52998 * 117.49920 * 210.77255 * 11 10 9 22 22 C 1.40331 * 118.79683 * 0.27206 * 6 4 3 23 23 O 1.35416 * 119.80272 * 179.97438 * 22 6 4 24 24 N 1.31881 * 119.40111 * 179.69869 * 2 1 3 25 25 H 1.09004 * 109.47794 * 270.29860 * 1 2 3 26 26 H 1.09000 * 109.47322 * 30.30132 * 1 2 3 27 27 H 1.09002 * 109.47232 * 150.30277 * 1 2 3 28 28 H 1.08002 * 120.26777 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.46837 * 269.71604 * 5 4 3 30 30 H 1.09001 * 109.46668 * 149.71888 * 5 4 3 31 31 H 1.08990 * 109.47137 * 29.72293 * 5 4 3 32 32 H 1.08998 * 109.46989 * 299.99811 * 10 9 7 33 33 H 1.09001 * 109.47035 * 59.99948 * 10 9 7 34 34 H 0.97002 * 120.00238 * 179.97438 * 15 14 12 35 35 H 1.08994 * 117.49414 * 0.02562 * 20 11 10 36 36 H 1.08995 * 117.49465 * 145.01609 * 20 11 10 37 37 H 1.08996 * 117.50342 * 214.98086 * 21 11 10 38 38 H 1.09000 * 117.49837 * 359.97438 * 21 11 10 39 39 H 0.96700 * 114.00019 * 90.00736 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2055 0.0000 4 6 3.5694 1.2071 -0.0053 5 6 4.3402 2.5020 -0.0117 6 6 4.2357 -0.0248 0.0011 7 6 5.7085 -0.0812 0.0015 8 8 6.3155 -0.0989 1.0539 9 8 6.3818 -0.1131 -1.1653 10 6 7.8307 -0.1687 -1.0890 11 6 8.4151 -0.1991 -2.5027 12 6 8.1826 1.0397 -3.3288 13 1 7.3340 1.0932 -3.9948 14 6 9.0532 2.1046 -3.2345 15 7 10.0134 2.0914 -2.3361 16 14 8.8685 3.5664 -4.3827 17 1 7.9654 4.5703 -3.7648 18 1 10.1998 4.1792 -4.6221 19 1 8.2935 3.1119 -5.6743 20 6 8.4277 -1.5434 -3.2332 21 6 9.7347 -0.9462 -2.7057 22 6 3.4755 -1.2044 0.0069 23 8 4.0987 -2.4066 0.0126 24 7 2.1544 -1.1489 0.0060 25 1 -0.3635 0.0054 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3634 -0.8927 -0.5091 28 1 1.6409 2.1377 0.0004 29 1 4.5264 2.8089 -1.0408 30 1 5.2906 2.3616 0.5032 31 1 3.7612 3.2720 0.4981 32 1 8.2007 0.7103 -0.5613 33 1 8.1320 -1.0683 -0.5523 34 1 10.6262 2.8405 -2.2700 35 1 8.0194 -2.4060 -2.7068 36 1 8.2682 -1.5317 -4.3114 37 1 10.4346 -0.5420 -3.4371 38 1 10.1868 -1.4156 -1.8321 39 1 4.2797 -2.7516 0.8977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755709768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -71.736996 kcal Electronic energy + Delta-G solvation = -23260.269960 eV Core-core repulsion = 19748.170155 eV Total energy + Delta-G solvation = -3512.099805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96833 -39.37218 -37.45059 -36.79096 -35.24201 -34.30276 -31.98433 -31.92986 -28.86432 -27.70486 -26.70546 -25.27850 -23.58521 -22.04189 -21.17824 -20.48023 -19.28711 -18.52358 -17.55843 -17.31723 -16.73679 -15.77580 -15.67590 -15.19517 -14.63449 -14.52356 -14.20859 -13.81929 -13.46020 -13.35094 -13.12407 -12.90375 -12.56825 -12.26774 -12.14417 -12.08050 -11.88619 -11.72486 -11.64787 -11.00915 -10.89881 -10.58930 -10.40069 -10.26567 -9.90813 -9.75117 -9.58639 -9.49653 -8.93046 -8.83997 -8.48818 -8.22592 -6.09461 -4.14546 0.65940 0.99212 2.47969 3.11129 3.24752 3.25751 3.33010 3.37320 3.59776 4.33296 4.36553 4.42546 4.84092 4.89911 5.08951 5.17233 5.20778 5.26019 5.34031 5.39665 5.51380 5.59808 5.69158 5.78557 5.95362 5.99848 6.06402 6.22227 6.29539 6.34247 6.49706 6.61603 6.74332 7.02257 7.11046 7.32853 7.34681 7.44718 7.72323 7.83972 8.23968 8.38496 8.87402 9.51159 10.99895 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.004810 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.951215 B = 5819.856437 C = 6621.556351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.167 3.833 3 C -0.187 4.187 4 C 0.021 3.979 5 C -0.129 4.129 6 C -0.174 4.174 7 C 0.518 3.482 8 O -0.512 6.512 9 O -0.322 6.322 10 C 0.114 3.886 11 C 0.036 3.964 12 C -0.489 4.489 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.204 4.204 21 C -0.143 4.143 22 C 0.361 3.639 23 O -0.473 6.473 24 N -0.507 5.507 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -1.648 6.283 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.029 3.971 3 C -0.207 4.207 4 C 0.014 3.986 5 C -0.186 4.186 6 C -0.179 4.179 7 C 0.360 3.640 8 O -0.403 6.403 9 O -0.237 6.237 10 C 0.041 3.959 11 C 0.035 3.965 12 C -0.526 4.526 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.518 5.518 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.242 4.242 21 C -0.180 4.180 22 C 0.181 3.819 23 O -0.280 6.280 24 N -0.227 5.227 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.164 0.836 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -15.245 -2.304 6.028 16.555 hybrid contribution 0.765 1.379 0.030 1.578 sum -14.480 -0.925 6.059 15.723 Atomic orbital electron populations 1.20784 0.88095 1.03964 1.03393 1.21175 0.96957 0.87079 0.91888 1.21755 0.93370 0.99677 1.05914 1.20309 0.93746 0.94187 0.90391 1.21013 1.00271 0.92698 1.04577 1.20244 0.92167 0.94556 1.10896 1.20622 0.87606 0.72547 0.83192 1.90829 1.69864 1.46392 1.33173 1.86708 1.24438 1.81136 1.31380 1.23000 0.72910 1.00249 0.99723 1.18772 0.96105 0.91169 0.90427 1.20384 1.10820 0.97929 1.23500 0.91918 1.25002 0.95096 0.98113 0.95164 1.69998 1.17433 1.31416 1.32944 0.86610 0.77433 0.82578 0.81523 1.20633 1.21118 1.19715 1.23016 1.03356 0.97924 0.99872 1.22535 0.90963 1.03135 1.01399 1.18918 0.86332 0.84172 0.92458 1.84739 1.76676 1.32609 1.33982 1.67050 1.08764 1.30370 1.16523 0.89962 0.90160 0.90104 0.83598 0.88675 0.90398 0.90081 0.90486 0.94088 0.92897 0.91432 0.90041 0.89370 0.91619 0.73627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.16 36.00 0.37 -0.43 16 2 C 0.17 1.96 6.78 -82.52 -0.56 1.40 16 3 C -0.19 -2.12 9.41 -39.50 -0.37 -2.49 16 4 C 0.02 0.30 5.95 -103.91 -0.62 -0.31 16 5 C -0.13 -1.71 9.69 36.01 0.35 -1.36 16 6 C -0.17 -2.98 5.78 -104.71 -0.61 -3.58 16 7 C 0.52 10.54 5.56 34.46 0.19 10.74 16 8 O -0.51 -11.15 16.90 -19.27 -0.33 -11.47 16 9 O -0.32 -7.40 10.17 -40.61 -0.41 -7.81 16 10 C 0.11 2.75 5.30 37.16 0.20 2.94 16 11 C 0.04 0.90 1.62 -155.66 -0.25 0.64 16 12 C -0.49 -13.31 8.77 -34.44 -0.30 -13.61 16 13 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 14 C 0.07 1.87 5.38 -17.82 -0.10 1.78 16 15 N -0.88 -24.54 12.88 55.43 0.71 -23.83 16 16 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.20 -4.57 9.96 -26.69 -0.27 -4.83 16 21 C -0.14 -3.34 9.37 -26.69 -0.25 -3.59 16 22 C 0.36 5.79 7.77 -16.59 -0.13 5.66 16 23 O -0.47 -7.14 13.02 -17.94 -0.23 -7.38 16 24 N -0.51 -7.40 10.28 -9.20 -0.09 -7.50 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.20 7.19 -51.93 -0.37 0.83 16 31 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 33 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.40 4.11 9.06 45.56 0.41 4.52 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -32.45 345.44 -7.09 -39.54 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.57 Total: 4.52 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.35 Total: -7.05 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.62 Total: -31.32 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.97 Total: -26.66 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.45 -7.09 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755709768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.197 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds