Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38375 * 119.40245 * 2 1 4 4 C 1.38316 * 119.46577 * 180.25446 * 3 2 1 5 5 C 1.50703 * 120.82480 * 179.72711 * 4 3 2 6 6 C 1.40046 * 118.34135 * 359.45474 * 4 3 2 7 7 C 1.47392 * 120.59879 * 180.25359 * 6 4 3 8 8 O 1.21510 * 119.99764 * 90.00226 * 7 6 4 9 9 O 1.34743 * 120.00022 * 269.99802 * 7 6 4 10 10 C 1.45199 * 117.00221 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.50705 * 115.54840 * 65.11060 * 11 10 9 13 13 H 1.08005 * 119.99574 * 266.10424 * 12 11 10 14 14 C 1.37871 * 120.00164 * 86.10922 * 12 11 10 15 15 N 1.31513 * 120.00244 * 353.69332 * 14 12 11 16 16 Si 1.86795 * 119.99895 * 173.70239 * 14 12 11 17 17 H 1.48506 * 109.47378 * 89.99596 * 16 14 12 18 18 H 1.48500 * 109.47350 * 209.99652 * 16 14 12 19 19 H 1.48500 * 109.47450 * 329.99766 * 16 14 12 20 20 C 1.53001 * 117.50104 * 279.43378 * 11 10 9 21 21 C 1.52998 * 117.49920 * 210.77255 * 11 10 9 22 22 C 1.40331 * 118.79683 * 0.27206 * 6 4 3 23 23 O 1.35416 * 119.80272 * 179.97438 * 22 6 4 24 24 N 1.31881 * 119.40111 * 179.69869 * 2 1 3 25 25 H 1.09004 * 109.47794 * 270.29860 * 1 2 3 26 26 H 1.09000 * 109.47322 * 30.30132 * 1 2 3 27 27 H 1.09002 * 109.47232 * 150.30277 * 1 2 3 28 28 H 1.08002 * 120.26777 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.46837 * 269.71604 * 5 4 3 30 30 H 1.09001 * 109.46668 * 149.71888 * 5 4 3 31 31 H 1.08990 * 109.47137 * 29.72293 * 5 4 3 32 32 H 1.08998 * 109.46989 * 299.99811 * 10 9 7 33 33 H 1.09001 * 109.47035 * 59.99948 * 10 9 7 34 34 H 0.97002 * 120.00238 * 179.97438 * 15 14 12 35 35 H 1.08994 * 117.49414 * 0.02562 * 20 11 10 36 36 H 1.08995 * 117.49465 * 145.01609 * 20 11 10 37 37 H 1.08996 * 117.50342 * 214.98086 * 21 11 10 38 38 H 1.09000 * 117.49837 * 359.97438 * 21 11 10 39 39 H 0.96700 * 114.00019 * 90.00736 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2055 0.0000 4 6 3.5694 1.2071 -0.0053 5 6 4.3402 2.5020 -0.0117 6 6 4.2357 -0.0248 0.0011 7 6 5.7085 -0.0812 0.0015 8 8 6.3155 -0.0989 1.0539 9 8 6.3818 -0.1131 -1.1653 10 6 7.8307 -0.1687 -1.0890 11 6 8.4151 -0.1991 -2.5027 12 6 8.1826 1.0397 -3.3288 13 1 7.3340 1.0932 -3.9948 14 6 9.0532 2.1046 -3.2345 15 7 10.0134 2.0914 -2.3361 16 14 8.8685 3.5664 -4.3827 17 1 7.9654 4.5703 -3.7648 18 1 10.1998 4.1792 -4.6221 19 1 8.2935 3.1119 -5.6743 20 6 8.4277 -1.5434 -3.2332 21 6 9.7347 -0.9462 -2.7057 22 6 3.4755 -1.2044 0.0069 23 8 4.0987 -2.4066 0.0126 24 7 2.1544 -1.1489 0.0060 25 1 -0.3635 0.0054 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3634 -0.8927 -0.5091 28 1 1.6409 2.1377 0.0004 29 1 4.5264 2.8089 -1.0408 30 1 5.2906 2.3616 0.5032 31 1 3.7612 3.2720 0.4981 32 1 8.2007 0.7103 -0.5613 33 1 8.1320 -1.0683 -0.5523 34 1 10.6262 2.8405 -2.2700 35 1 8.0194 -2.4060 -2.7068 36 1 8.2682 -1.5317 -4.3114 37 1 10.4346 -0.5420 -3.4371 38 1 10.1868 -1.4156 -1.8321 39 1 4.2797 -2.7516 0.8977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755709768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -93.974018 kcal Electronic energy + Delta-G solvation = -23261.234230 eV Core-core repulsion = 19748.170155 eV Total energy + Delta-G solvation = -3513.064074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.19026 -40.89795 -38.63649 -38.53152 -37.02307 -35.37767 -34.04637 -32.89663 -30.05517 -28.77999 -28.30566 -27.28282 -24.75928 -23.28655 -22.95560 -21.78925 -21.24149 -19.62543 -19.06831 -18.56910 -18.51647 -17.51954 -16.97753 -16.76707 -16.49355 -15.85139 -15.38862 -15.19217 -14.88559 -14.37059 -14.30651 -14.02528 -13.93705 -13.85317 -13.61146 -13.27993 -13.06177 -12.96936 -12.87372 -12.82828 -12.68969 -12.41695 -12.14247 -11.98830 -11.77052 -11.52621 -10.82308 -10.75812 -10.65370 -10.51280 -10.13630 -9.95184 -8.15586 -6.27382 -0.42283 -0.05622 0.89641 1.39937 1.42304 1.52708 1.63916 2.23383 2.41055 2.49641 3.12504 3.27123 3.40621 3.47235 3.64661 3.86945 4.07046 4.10325 4.18793 4.32601 4.39872 4.45193 4.49952 4.57280 4.60454 4.74952 4.84111 4.92015 4.92863 4.97303 5.04403 5.13895 5.15295 5.33699 5.47035 5.50731 5.57274 5.72131 6.32367 6.34140 6.58937 6.70225 6.76939 7.41354 8.93387 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.004810 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.951215 B = 5819.856437 C = 6621.556351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.168 3.832 3 C -0.171 4.171 4 C 0.011 3.989 5 C -0.127 4.127 6 C -0.210 4.210 7 C 0.523 3.477 8 O -0.535 6.535 9 O -0.338 6.338 10 C 0.127 3.873 11 C 0.003 3.997 12 C -0.506 4.506 13 H 0.051 0.949 14 C 0.027 3.973 15 N -0.907 5.907 16 Si 0.952 3.048 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.183 4.183 21 C -0.140 4.140 22 C 0.352 3.648 23 O -0.488 6.488 24 N -0.521 5.521 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.193 0.807 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.966 -0.761 6.055 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.031 3.969 3 C -0.190 4.190 4 C 0.004 3.996 5 C -0.183 4.183 6 C -0.215 4.215 7 C 0.367 3.633 8 O -0.426 6.426 9 O -0.253 6.253 10 C 0.053 3.947 11 C 0.003 3.997 12 C -0.544 4.544 13 H 0.069 0.931 14 C -0.174 4.174 15 N -0.545 5.545 16 Si 0.777 3.223 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.220 4.220 21 C -0.177 4.177 22 C 0.173 3.827 23 O -0.299 6.299 24 N -0.242 5.242 25 H 0.121 0.879 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.210 0.790 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -18.003 -1.433 5.812 18.972 hybrid contribution 1.494 1.086 0.149 1.853 sum -16.509 -0.347 5.961 17.556 Atomic orbital electron populations 1.20966 0.84591 1.05332 1.05075 1.22063 0.99084 0.86460 0.89296 1.22207 0.91862 1.01474 1.03484 1.20582 0.95282 0.93265 0.90509 1.21032 0.99448 0.93639 1.04212 1.20247 0.89832 0.96553 1.14896 1.21215 0.88966 0.71091 0.82037 1.90789 1.70841 1.47367 1.33623 1.86705 1.23730 1.81744 1.33118 1.22642 0.73937 0.99093 0.98988 1.18896 0.97812 0.91959 0.91064 1.20567 1.10707 0.99317 1.23782 0.93061 1.25691 0.94754 1.00528 0.96397 1.70100 1.18061 1.32221 1.34093 0.85656 0.77551 0.79446 0.79659 1.19941 1.20633 1.19289 1.23014 1.01948 0.96998 1.00007 1.22471 0.90667 1.02965 1.01601 1.19001 0.86960 0.83898 0.92812 1.84672 1.76903 1.32601 1.35696 1.67195 1.07730 1.31920 1.17400 0.87881 0.87149 0.90385 0.79010 0.89382 0.93610 0.85976 0.93556 0.93248 0.92853 0.89491 0.89686 0.90861 0.90254 0.71738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.16 71.23 0.72 -0.37 16 2 C 0.17 3.44 6.78 42.58 0.29 3.73 16 3 C -0.17 -3.27 9.41 22.32 0.21 -3.06 16 4 C 0.01 0.30 5.95 -19.41 -0.12 0.19 16 5 C -0.13 -3.28 9.69 71.24 0.69 -2.59 16 6 C -0.21 -7.29 5.78 -19.92 -0.12 -7.41 16 7 C 0.52 22.15 5.56 70.23 0.39 22.54 16 8 O -0.54 -24.39 16.90 19.80 0.33 -24.05 16 9 O -0.34 -16.13 10.17 -56.54 -0.57 -16.71 16 10 C 0.13 6.33 5.30 71.98 0.38 6.71 16 11 C 0.00 0.16 1.62 -52.93 -0.09 0.07 16 12 C -0.51 -28.13 8.77 25.60 0.22 -27.91 16 13 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 14 C 0.03 1.47 5.38 84.65 0.46 1.93 16 15 N -0.91 -51.53 12.88 21.44 0.28 -51.26 16 16 Si 0.95 42.91 29.54 68.60 2.03 44.93 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C -0.18 -8.10 9.96 30.62 0.30 -7.79 16 21 C -0.14 -6.57 9.37 30.62 0.29 -6.29 16 22 C 0.35 11.29 7.77 85.14 0.66 11.95 16 23 O -0.49 -15.01 13.02 -87.11 -1.13 -16.15 16 24 N -0.52 -14.48 10.28 -296.02 -3.04 -17.52 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 0.57 8.07 -2.39 -0.02 0.55 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.04 1.46 7.19 -2.39 -0.02 1.45 16 31 H 0.12 2.04 8.10 -2.39 -0.02 2.02 16 32 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 2.31 8.09 -2.39 -0.02 2.29 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 37 H 0.07 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.42 8.84 9.06 -74.06 -0.67 8.16 16 Total: -1.00 -72.40 345.44 2.59 -69.81 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.40 Total: 19.23 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 4.30 Total: -8.29 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -2.77 Total: -68.78 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -1.37 Total: -56.90 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.40 2.59 -69.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755709768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.160 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds