Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47028 * 2 1 4 4 C 1.53002 * 109.47208 * 120.00088 * 2 1 3 5 5 H 1.08999 * 109.47213 * 55.01736 * 4 2 1 6 6 O 1.45200 * 109.46950 * 295.02313 * 4 2 1 7 7 C 1.34772 * 117.00070 * 89.99696 * 6 4 2 8 8 O 1.21503 * 120.00349 * 0.02562 * 7 6 4 9 9 C 1.47516 * 119.99938 * 179.97438 * 7 6 4 10 10 C 1.40061 * 119.90164 * 359.72857 * 9 7 6 11 11 C 1.36294 * 120.10318 * 179.75515 * 10 9 7 12 12 C 1.40906 * 119.89475 * 0.51952 * 11 10 9 13 13 C 1.41091 * 120.09498 * 179.71408 * 12 11 10 14 14 H 1.08003 * 119.99718 * 202.33020 * 13 12 11 15 15 C 1.40240 * 120.00297 * 22.33272 * 13 12 11 16 16 N 1.30642 * 120.00124 * 30.92039 * 15 13 12 17 17 Si 1.86798 * 120.00041 * 210.91581 * 15 13 12 18 18 H 1.48499 * 109.46945 * 94.99299 * 17 15 13 19 19 H 1.48503 * 109.47507 * 214.99032 * 17 15 13 20 20 H 1.48497 * 109.47443 * 334.99398 * 17 15 13 21 21 C 1.40891 * 119.80073 * 359.73399 * 12 11 10 22 22 C 1.36300 * 119.90134 * 0.02562 * 21 12 11 23 23 C 1.50694 * 109.47234 * 175.02356 * 4 2 1 24 24 N 1.34773 * 120.00122 * 290.27807 * 23 4 2 25 25 O 1.21288 * 120.00122 * 110.27615 * 23 4 2 26 26 H 1.08993 * 109.47617 * 306.61439 * 1 2 3 27 27 H 1.09001 * 109.47005 * 66.61803 * 1 2 3 28 28 H 1.09004 * 109.47093 * 186.60954 * 1 2 3 29 29 H 1.09008 * 109.47500 * 239.99614 * 2 1 3 30 30 H 1.08998 * 109.47098 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47088 * 299.99497 * 3 2 1 32 32 H 1.08995 * 109.47032 * 60.00029 * 3 2 1 33 33 H 1.08005 * 119.95082 * 0.02562 * 10 9 7 34 34 H 1.08004 * 120.05367 * 180.23019 * 11 10 9 35 35 H 0.96994 * 119.99795 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.04842 * 179.97438 * 21 12 11 37 37 H 1.08003 * 119.94955 * 179.97438 * 22 21 12 38 38 H 0.96998 * 120.00047 * 5.23847 * 24 23 4 39 39 H 0.97003 * 120.00515 * 185.24944 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6056 -1.7199 1.2950 6 8 1.6554 0.0283 2.4318 7 6 0.4674 -0.2770 2.9902 8 8 -0.2277 -1.1461 2.5026 9 6 0.0115 0.4433 4.1942 10 6 0.8175 1.4401 4.7586 11 6 0.3981 2.1115 5.8680 12 6 -0.8435 1.7939 6.4536 13 6 -1.2791 2.4822 7.6057 14 1 -2.0133 2.0328 8.2579 15 6 -0.7587 3.7499 7.9039 16 7 -0.3883 4.5477 6.9380 17 14 -0.5954 4.2978 9.6823 18 1 0.7794 4.0105 10.1644 19 1 -0.8586 5.7562 9.7772 20 1 -1.5772 3.5622 10.5191 21 6 -1.6485 0.7868 5.8855 22 6 -1.2233 0.1239 4.7731 23 6 3.5419 -0.8289 1.1892 24 7 4.1235 -1.6454 0.2884 25 8 4.2273 -0.1807 1.9515 26 1 -0.3634 0.6129 0.8248 27 1 -0.3633 0.4078 -0.9433 28 1 -0.3633 -1.0209 0.1183 29 1 1.8934 -0.5139 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.7709 1.6800 4.3114 34 1 1.0186 2.8826 6.3004 35 1 -0.0280 5.4243 7.1443 36 1 -2.6007 0.5399 6.3314 37 1 -1.8395 -0.6486 4.3372 38 1 3.5806 -2.1053 -0.3709 39 1 5.0850 -1.7732 0.2993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758697560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -125.520838 kcal Electronic energy + Delta-G solvation = -23159.096947 eV Core-core repulsion = 19644.664900 eV Total energy + Delta-G solvation = -3514.432047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44218 -38.94665 -37.44684 -35.96667 -34.63858 -33.98347 -33.52925 -30.38951 -29.52686 -27.91022 -27.05331 -25.97289 -22.56943 -21.51600 -20.96139 -20.35835 -19.38388 -17.87024 -17.56561 -17.26135 -16.44680 -15.99787 -15.78084 -15.34900 -14.65353 -14.14271 -14.02952 -13.90170 -13.44144 -13.18426 -12.97524 -12.70378 -12.25710 -12.16501 -12.06029 -11.81900 -11.61995 -11.37830 -11.28750 -11.08648 -11.00912 -10.80854 -10.72030 -10.23653 -10.13594 -9.82951 -9.69362 -9.55836 -9.39964 -9.28400 -7.76892 -7.69414 -7.21954 -4.65306 2.07405 2.53517 2.83954 2.87901 2.93720 2.96217 3.05050 3.60890 3.68534 3.81044 4.38536 4.65836 4.70097 4.92991 5.06016 5.37875 5.50580 5.54771 5.75978 5.87269 5.97519 6.03930 6.08840 6.22507 6.28170 6.43470 6.47930 6.62371 6.71343 6.80422 6.96647 6.99893 7.09371 7.17578 7.41566 7.67816 7.75614 7.85544 7.98927 8.15827 8.32929 8.54580 8.69856 8.74445 9.70999 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.003776 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.150276 B = 7413.118097 C = 7804.885273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.148 4.148 4 C 0.073 3.927 5 H 0.105 0.895 6 O -0.326 6.326 7 C 0.514 3.486 8 O -0.550 6.550 9 C -0.282 4.282 10 C -0.035 4.035 11 C -0.196 4.196 12 C 0.133 3.867 13 C -0.437 4.437 14 H 0.091 0.909 15 C 0.082 3.918 16 N -0.743 5.743 17 Si 0.908 3.092 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.256 1.256 21 C -0.243 4.243 22 C -0.013 4.013 23 C 0.523 3.477 24 N -0.855 5.855 25 O -0.515 6.515 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.291 0.709 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.401 0.599 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 -5.776 -10.642 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.205 4.205 4 C 0.014 3.986 5 H 0.123 0.877 6 O -0.243 6.243 7 C 0.367 3.633 8 O -0.445 6.445 9 C -0.284 4.284 10 C -0.054 4.054 11 C -0.215 4.215 12 C 0.129 3.871 13 C -0.463 4.463 14 H 0.109 0.891 15 C -0.144 4.144 16 N -0.364 5.364 17 Si 0.730 3.270 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.179 1.179 21 C -0.262 4.262 22 C -0.032 4.032 23 C 0.306 3.694 24 N -0.422 5.422 25 O -0.388 6.388 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.229 0.771 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.001 -5.249 -10.271 12.572 hybrid contribution 0.250 -0.060 0.220 0.338 sum 5.251 -5.310 -10.051 12.522 Atomic orbital electron populations 1.21907 0.93179 1.03283 1.01882 1.21490 0.97842 0.97625 0.95123 1.21811 1.00785 0.95133 1.02772 1.22356 0.91464 0.98255 0.86553 0.87743 1.86760 1.38563 1.59137 1.39848 1.21628 0.77630 0.80748 0.83253 1.90669 1.55718 1.33835 1.64233 1.18098 1.00921 1.08981 1.00404 1.20639 0.97031 0.93050 0.94645 1.20774 0.97555 1.03731 0.99428 1.17779 0.90098 0.89321 0.89873 1.19925 1.20077 0.99823 1.06474 0.89149 1.26174 0.92131 0.96148 0.99930 1.69811 1.24349 1.07062 1.35176 0.86290 0.80448 0.78363 0.81870 1.18659 1.19869 1.17949 1.20611 1.00746 1.04761 1.00082 1.20321 0.92972 0.95831 0.94051 1.20307 0.90017 0.78853 0.80202 1.43712 1.12144 1.50106 1.36216 1.90790 1.64903 1.42666 1.40457 0.91999 0.92672 0.91406 0.90057 0.92811 0.92457 0.91067 0.87887 0.87251 0.89734 0.88138 0.87997 0.77090 0.76454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 7.75 37.16 0.29 -1.73 16 2 C -0.10 -1.29 2.75 -90.62 -0.25 -1.54 16 3 C -0.15 -1.99 8.81 37.16 0.33 -1.67 16 4 C 0.07 1.12 2.35 -27.88 -0.07 1.05 16 5 H 0.10 1.52 7.16 -51.93 -0.37 1.15 16 6 O -0.33 -6.51 7.74 -47.32 -0.37 -6.87 16 7 C 0.51 11.18 6.43 34.51 0.22 11.41 16 8 O -0.55 -11.94 13.38 -19.27 -0.26 -12.19 16 9 C -0.28 -6.67 5.89 -104.75 -0.62 -7.29 16 10 C -0.03 -0.84 9.54 -39.60 -0.38 -1.22 16 11 C -0.20 -4.95 8.72 -39.27 -0.34 -5.29 16 12 C 0.13 3.38 5.57 -106.80 -0.60 2.78 16 13 C -0.44 -10.74 8.96 -37.75 -0.34 -11.07 16 14 H 0.09 2.11 8.01 -52.48 -0.42 1.69 16 15 C 0.08 1.89 4.81 -17.31 -0.08 1.80 16 16 N -0.74 -17.69 11.68 55.56 0.65 -17.04 16 17 Si 0.91 16.92 29.65 -169.99 -5.04 11.87 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 21 C -0.24 -5.82 9.73 -39.28 -0.38 -6.20 16 22 C -0.01 -0.31 9.52 -39.60 -0.38 -0.68 16 23 C 0.52 7.51 6.39 -10.99 -0.07 7.44 16 24 N -0.86 -7.40 8.87 31.22 0.28 -7.12 16 25 O -0.51 -9.81 17.37 -13.91 -0.24 -10.05 16 26 H 0.06 1.06 6.63 -51.93 -0.34 0.71 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.97 7.39 -51.93 -0.38 0.58 16 29 H 0.08 0.75 8.05 -51.92 -0.42 0.33 16 30 H 0.05 0.73 7.38 -51.93 -0.38 0.34 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.15 7.55 -51.93 -0.39 0.76 16 33 H 0.10 2.38 7.59 -52.48 -0.40 1.98 16 34 H 0.11 2.79 6.48 -52.48 -0.34 2.45 16 35 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 37 H 0.10 2.23 7.63 -52.48 -0.40 1.83 16 38 H 0.40 2.18 8.75 -40.82 -0.36 1.82 16 39 H 0.40 2.89 8.93 -40.82 -0.36 2.53 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -30.11 331.42 -7.62 -37.73 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.98 Total: 10.89 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.66 Total: -12.21 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.93 Total: -24.16 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.87 Total: -29.11 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.04 Total: 11.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.11 -7.62 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758697560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.791 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds