Wall clock time and date at job start Tue Mar 31 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47028 * 2 1 4 4 C 1.53002 * 109.47208 * 120.00088 * 2 1 3 5 5 H 1.08999 * 109.47213 * 55.01736 * 4 2 1 6 6 O 1.45200 * 109.46950 * 295.02313 * 4 2 1 7 7 C 1.34772 * 117.00070 * 89.99696 * 6 4 2 8 8 O 1.21503 * 120.00349 * 0.02562 * 7 6 4 9 9 C 1.47516 * 119.99938 * 179.97438 * 7 6 4 10 10 C 1.40061 * 119.90164 * 359.72857 * 9 7 6 11 11 C 1.36294 * 120.10318 * 179.75515 * 10 9 7 12 12 C 1.40906 * 119.89475 * 0.51952 * 11 10 9 13 13 C 1.41091 * 120.09498 * 179.71408 * 12 11 10 14 14 H 1.08003 * 119.99718 * 202.33020 * 13 12 11 15 15 C 1.40240 * 120.00297 * 22.33272 * 13 12 11 16 16 N 1.30642 * 120.00124 * 30.92039 * 15 13 12 17 17 Si 1.86798 * 120.00041 * 210.91581 * 15 13 12 18 18 H 1.48499 * 109.46945 * 94.99299 * 17 15 13 19 19 H 1.48503 * 109.47507 * 214.99032 * 17 15 13 20 20 H 1.48497 * 109.47443 * 334.99398 * 17 15 13 21 21 C 1.40891 * 119.80073 * 359.73399 * 12 11 10 22 22 C 1.36300 * 119.90134 * 0.02562 * 21 12 11 23 23 C 1.50694 * 109.47234 * 175.02356 * 4 2 1 24 24 N 1.34773 * 120.00122 * 290.27807 * 23 4 2 25 25 O 1.21288 * 120.00122 * 110.27615 * 23 4 2 26 26 H 1.08993 * 109.47617 * 306.61439 * 1 2 3 27 27 H 1.09001 * 109.47005 * 66.61803 * 1 2 3 28 28 H 1.09004 * 109.47093 * 186.60954 * 1 2 3 29 29 H 1.09008 * 109.47500 * 239.99614 * 2 1 3 30 30 H 1.08998 * 109.47098 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47088 * 299.99497 * 3 2 1 32 32 H 1.08995 * 109.47032 * 60.00029 * 3 2 1 33 33 H 1.08005 * 119.95082 * 0.02562 * 10 9 7 34 34 H 1.08004 * 120.05367 * 180.23019 * 11 10 9 35 35 H 0.96994 * 119.99795 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.04842 * 179.97438 * 21 12 11 37 37 H 1.08003 * 119.94955 * 179.97438 * 22 21 12 38 38 H 0.96998 * 120.00047 * 5.23847 * 24 23 4 39 39 H 0.97003 * 120.00515 * 185.24944 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6056 -1.7199 1.2950 6 8 1.6554 0.0283 2.4318 7 6 0.4674 -0.2770 2.9902 8 8 -0.2277 -1.1461 2.5026 9 6 0.0115 0.4433 4.1942 10 6 0.8175 1.4401 4.7586 11 6 0.3981 2.1115 5.8680 12 6 -0.8435 1.7939 6.4536 13 6 -1.2791 2.4822 7.6057 14 1 -2.0133 2.0328 8.2579 15 6 -0.7587 3.7499 7.9039 16 7 -0.3883 4.5477 6.9380 17 14 -0.5954 4.2978 9.6823 18 1 0.7794 4.0105 10.1644 19 1 -0.8586 5.7562 9.7772 20 1 -1.5772 3.5622 10.5191 21 6 -1.6485 0.7868 5.8855 22 6 -1.2233 0.1239 4.7731 23 6 3.5419 -0.8289 1.1892 24 7 4.1235 -1.6454 0.2884 25 8 4.2273 -0.1807 1.9515 26 1 -0.3634 0.6129 0.8248 27 1 -0.3633 0.4078 -0.9433 28 1 -0.3633 -1.0209 0.1183 29 1 1.8934 -0.5139 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.7709 1.6800 4.3114 34 1 1.0186 2.8826 6.3004 35 1 -0.0280 5.4243 7.1443 36 1 -2.6007 0.5399 6.3314 37 1 -1.8395 -0.6486 4.3372 38 1 3.5806 -2.1053 -0.3709 39 1 5.0850 -1.7732 0.2993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758697560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:22 Heat of formation + Delta-G solvation = -143.916363 kcal Electronic energy + Delta-G solvation = -23159.894637 eV Core-core repulsion = 19644.664900 eV Total energy + Delta-G solvation = -3515.229737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85086 -40.35904 -39.21684 -37.44790 -35.95719 -35.76820 -34.54812 -32.22450 -31.41691 -29.20828 -28.17008 -27.70715 -24.28915 -22.84901 -22.59462 -21.96315 -20.68426 -19.41864 -18.95123 -18.80371 -17.66474 -17.47543 -17.24814 -16.94089 -15.86403 -15.78919 -15.48046 -15.23577 -15.14819 -14.72008 -14.35952 -14.11289 -14.03356 -13.75303 -13.32293 -13.28883 -13.17054 -12.97097 -12.78664 -12.62550 -12.36763 -12.21239 -11.94678 -11.85774 -11.50451 -11.40056 -11.21276 -11.06634 -10.88428 -10.74816 -9.66035 -9.60505 -8.97798 -6.53469 0.27278 1.13006 1.32466 1.38920 1.41275 1.53722 1.60299 1.89642 2.12484 2.57834 2.63853 3.54942 3.61641 3.68390 3.82874 3.98246 4.23195 4.31358 4.37273 4.42235 4.52207 4.70720 4.86479 4.89115 4.91994 4.96152 5.01185 5.09282 5.19527 5.30086 5.35320 5.41286 5.53860 5.79891 5.82189 5.87512 5.96235 6.12404 6.30512 6.45146 6.66721 6.81136 7.05224 7.21886 7.99625 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.003776 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.150276 B = 7413.118097 C = 7804.885273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.061 3.939 5 H 0.115 0.885 6 O -0.342 6.342 7 C 0.522 3.478 8 O -0.552 6.552 9 C -0.299 4.299 10 C -0.037 4.037 11 C -0.214 4.214 12 C 0.106 3.894 13 C -0.460 4.460 14 H 0.097 0.903 15 C 0.045 3.955 16 N -0.774 5.774 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.250 1.250 21 C -0.253 4.253 22 C -0.015 4.015 23 C 0.526 3.474 24 N -0.821 5.821 25 O -0.570 6.570 26 H 0.021 0.979 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.303 0.697 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.421 0.579 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -6.488 -11.737 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.202 4.202 4 C 0.003 3.997 5 H 0.132 0.868 6 O -0.258 6.258 7 C 0.374 3.626 8 O -0.447 6.447 9 C -0.302 4.302 10 C -0.055 4.055 11 C -0.233 4.233 12 C 0.103 3.897 13 C -0.485 4.485 14 H 0.115 0.885 15 C -0.179 4.179 16 N -0.395 5.395 17 Si 0.803 3.197 18 H -0.186 1.186 19 H -0.186 1.186 20 H -0.173 1.173 21 C -0.272 4.272 22 C -0.034 4.034 23 C 0.309 3.691 24 N -0.389 5.389 25 O -0.448 6.448 26 H 0.040 0.960 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.253 0.747 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.294 -6.011 -11.441 13.966 hybrid contribution 0.188 0.118 0.401 0.458 sum 5.482 -5.893 -11.040 13.662 Atomic orbital electron populations 1.21862 0.93989 1.02371 1.01677 1.21587 0.97006 0.97277 0.95567 1.21776 1.00624 0.95696 1.02152 1.22847 0.92487 0.98537 0.85862 0.86785 1.86704 1.37382 1.59968 1.41751 1.21201 0.78217 0.80351 0.82832 1.90644 1.55988 1.33790 1.64272 1.18380 1.01173 1.09130 1.01488 1.20683 0.97207 0.93207 0.94437 1.20752 0.97962 1.04289 1.00327 1.18095 0.90510 0.90392 0.90709 1.20243 1.20968 1.00730 1.06592 0.88487 1.27063 0.91020 0.95537 1.04235 1.69818 1.24303 1.07862 1.37522 0.85150 0.80287 0.78404 0.75855 1.18608 1.18573 1.17261 1.20812 1.01273 1.04729 1.00412 1.20492 0.93056 0.95958 0.93889 1.20207 0.89349 0.79063 0.80482 1.43405 1.13040 1.47814 1.34639 1.90779 1.65664 1.45352 1.43054 0.95959 0.89975 0.91730 0.85132 0.92946 0.89962 0.94789 0.87785 0.88283 0.88573 0.86682 0.86593 0.74669 0.74991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 7.75 71.98 0.56 -3.16 16 2 C -0.10 -2.21 2.75 -10.79 -0.03 -2.24 16 3 C -0.15 -3.75 8.81 71.98 0.63 -3.12 16 4 C 0.06 1.80 2.35 29.85 0.07 1.87 16 5 H 0.11 3.11 7.16 -2.39 -0.02 3.10 16 6 O -0.34 -13.85 7.74 -50.50 -0.39 -14.24 16 7 C 0.52 23.05 6.43 70.27 0.45 23.50 16 8 O -0.55 -23.86 13.38 19.83 0.27 -23.59 16 9 C -0.30 -14.61 5.89 -19.95 -0.12 -14.73 16 10 C -0.04 -1.84 9.54 22.26 0.21 -1.63 16 11 C -0.21 -11.30 8.72 22.47 0.20 -11.11 16 12 C 0.11 5.58 5.57 -21.28 -0.12 5.46 16 13 C -0.46 -22.95 8.96 23.46 0.21 -22.74 16 14 H 0.10 4.55 8.01 -2.91 -0.02 4.53 16 15 C 0.05 2.08 4.81 85.36 0.41 2.49 16 16 N -0.77 -37.38 11.68 21.87 0.26 -37.12 16 17 Si 0.98 34.21 29.65 68.60 2.03 36.25 16 18 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 19 H -0.26 -8.52 7.11 99.48 0.71 -7.82 16 20 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 21 C -0.25 -12.39 9.73 22.47 0.22 -12.17 16 22 C -0.02 -0.74 9.52 22.26 0.21 -0.52 16 23 C 0.53 14.35 6.39 87.66 0.56 14.91 16 24 N -0.82 -11.67 8.87 -173.54 -1.54 -13.21 16 25 O -0.57 -21.77 17.37 15.55 0.27 -21.50 16 26 H 0.02 0.74 6.63 -2.39 -0.02 0.73 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.72 7.39 -2.38 -0.02 1.71 16 29 H 0.13 1.77 8.05 -2.38 -0.02 1.75 16 30 H 0.05 1.36 7.38 -2.39 -0.02 1.34 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 1.12 7.55 -2.39 -0.02 1.10 16 33 H 0.10 5.09 7.59 -2.91 -0.02 5.07 16 34 H 0.10 5.30 6.48 -2.91 -0.02 5.28 16 35 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 36 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 37 H 0.12 5.09 7.63 -2.91 -0.02 5.07 16 38 H 0.42 2.77 8.75 -92.71 -0.81 1.96 16 39 H 0.42 4.70 8.93 -92.71 -0.83 3.87 16 Total: -1.00 -68.19 331.42 3.82 -64.37 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.54 Total: 32.25 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.47 Total: -23.20 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -1.28 Total: -50.33 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: 0.14 Total: -59.33 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.25 kcal Total: -68.19 3.82 -64.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758697560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.549 kcal (2) G-P(sol) polarization free energy of solvation -68.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds