Wall clock time and date at job start Tue Mar 31 2020 07:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 C 1.50700 * 109.46704 * 239.99891 * 2 1 3 5 5 N 1.34775 * 119.99748 * 60.00435 * 4 2 1 6 6 O 1.21278 * 119.99970 * 239.99690 * 4 2 1 7 7 C 1.50702 * 109.47191 * 120.00287 * 2 1 3 8 8 O 1.20822 * 120.00052 * 119.99715 * 7 2 1 9 9 O 1.34227 * 119.99544 * 299.99732 * 7 2 1 10 10 C 1.45205 * 116.99795 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47141 * 180.02562 * 10 9 7 12 12 C 1.38638 * 119.74606 * 269.72300 * 11 10 9 13 13 C 1.37621 * 120.24755 * 179.72019 * 12 11 10 14 14 C 1.40718 * 119.74108 * 0.57711 * 13 12 11 15 15 C 1.41399 * 120.24264 * 179.67662 * 14 13 12 16 16 H 1.08000 * 119.99997 * 204.39703 * 15 14 13 17 17 C 1.39945 * 119.99725 * 24.40249 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.85665 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.85493 * 17 15 14 20 20 H 1.48499 * 109.47149 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47189 * 120.00075 * 19 17 15 22 22 H 1.48505 * 109.47249 * 240.00131 * 19 17 15 23 23 C 1.40713 * 119.51470 * 359.70015 * 14 13 12 24 24 C 1.37621 * 119.74491 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.46940 * 299.99812 * 1 2 3 26 26 H 1.08993 * 109.47075 * 59.99923 * 1 2 3 27 27 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46756 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46822 * 300.00380 * 3 2 1 30 30 H 1.09003 * 109.47121 * 60.00298 * 3 2 1 31 31 H 0.96995 * 120.00385 * 359.97438 * 5 4 2 32 32 H 0.97007 * 120.00193 * 180.02562 * 5 4 2 33 33 H 1.09007 * 109.46874 * 299.99831 * 10 9 7 34 34 H 1.08999 * 109.46972 * 59.99668 * 10 9 7 35 35 H 1.07996 * 119.87536 * 359.97438 * 12 11 10 36 36 H 1.08002 * 120.12997 * 180.27512 * 13 12 11 37 37 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.13056 * 179.97438 * 23 14 13 39 39 H 1.07993 * 119.87567 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7067 -0.2499 -2.4545 6 8 2.7296 -1.6965 -1.1192 7 6 2.0324 -0.7105 1.2304 8 8 2.7270 -1.6928 1.1195 9 8 1.7082 -0.2518 2.4495 10 6 2.2278 -0.9857 3.5896 11 6 1.7628 -0.3293 4.8639 12 6 2.5357 0.6620 5.4488 13 6 2.1181 1.2724 6.6094 14 6 0.9075 0.8782 7.2089 15 6 0.4717 1.4935 8.4051 16 1 -0.2010 0.9694 9.0678 17 6 0.9121 2.7815 8.7301 18 7 1.4257 3.5502 7.8045 19 14 0.7663 3.4031 10.4855 20 1 0.1566 2.3487 11.3350 21 1 2.1163 3.7380 11.0058 22 1 -0.0892 4.6167 10.5115 23 6 0.1341 -0.1330 6.6095 24 6 0.5685 -0.7256 5.4458 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1488 0.5385 -2.5435 32 1 2.0296 -0.7074 -3.2467 33 1 1.8643 -2.0129 3.5568 34 1 3.3173 -0.9847 3.5565 35 1 3.4669 0.9591 4.9897 36 1 2.7195 2.0475 7.0610 37 1 1.7313 4.4428 8.0298 38 1 -0.7964 -0.4436 7.0613 39 1 -0.0236 -1.5016 4.9838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769677286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:21 Heat of formation + Delta-G solvation = -116.423875 kcal Electronic energy + Delta-G solvation = -22647.814165 eV Core-core repulsion = 19133.776592 eV Total energy + Delta-G solvation = -3514.037573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86978 -39.07894 -37.61812 -35.85494 -35.25492 -33.84917 -33.27602 -30.73924 -29.36641 -27.66155 -27.24856 -24.70826 -23.89375 -22.22572 -21.08031 -20.03557 -19.67534 -17.91341 -17.39512 -17.06344 -16.14284 -16.02812 -15.82215 -15.33450 -14.85459 -14.36258 -14.24024 -13.87101 -13.72173 -13.16986 -12.96093 -12.58472 -12.45285 -12.39704 -12.15877 -12.04594 -11.93949 -11.72742 -11.48887 -11.18592 -10.98481 -10.81161 -10.43073 -10.24819 -10.07774 -9.85516 -9.74983 -9.51810 -9.45290 -9.22062 -7.56186 -7.44891 -6.87166 -4.46565 2.38493 2.41121 2.60591 2.85499 3.00507 3.02866 3.07593 3.15895 3.50445 3.85423 4.41925 4.47235 4.60389 4.67248 5.01437 5.26143 5.43032 5.49323 5.49763 5.63137 5.71002 5.75099 5.90915 5.93372 6.12271 6.26268 6.32147 6.56775 6.86679 6.92239 6.97309 7.08146 7.18652 7.26673 7.51856 7.74432 7.95932 8.01629 8.05499 8.19235 8.22435 8.54009 8.78567 8.86778 10.06561 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033290 B = 0.003073 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.879081 B = 9110.250303 C = 9393.225724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.140 4.140 4 C 0.524 3.476 5 N -0.854 5.854 6 O -0.498 6.498 7 C 0.459 3.541 8 O -0.477 6.477 9 O -0.347 6.347 10 C 0.136 3.864 11 C -0.233 4.233 12 C -0.076 4.076 13 C -0.170 4.170 14 C 0.118 3.882 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.909 3.091 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.230 4.230 24 C -0.064 4.064 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.400 0.600 32 H 0.403 0.597 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.282 0.718 38 H 0.094 0.906 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 0.352 -14.654 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.198 4.198 4 C 0.306 3.694 5 N -0.420 5.420 6 O -0.370 6.370 7 C 0.299 3.701 8 O -0.362 6.362 9 O -0.264 6.264 10 C 0.065 3.935 11 C -0.235 4.235 12 C -0.094 4.094 13 C -0.189 4.189 14 C 0.115 3.885 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.249 4.249 24 C -0.082 4.082 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.234 0.766 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.113 -0.372 -14.386 14.433 hybrid contribution -0.164 0.571 0.316 0.673 sum -1.277 0.199 -14.070 14.129 Atomic orbital electron populations 1.21864 0.89678 1.03675 1.04504 1.20523 0.99453 0.97774 0.90461 1.21867 1.02142 0.91222 1.04525 1.19926 0.80376 0.84452 0.84614 1.43751 1.56622 1.34066 1.07596 1.90902 1.35405 1.24705 1.85980 1.22696 0.78844 0.83276 0.85295 1.90762 1.33846 1.24613 1.86990 1.86670 1.69519 1.56165 1.14076 1.21727 0.97389 0.93664 0.80764 1.18680 1.00714 1.06882 0.97204 1.20543 0.97652 0.95010 0.96211 1.21292 0.97505 1.02703 0.97440 1.17688 0.89929 0.89515 0.91342 1.19705 1.24922 0.99182 1.04669 0.90157 1.25966 0.92755 0.96643 0.99016 1.69834 1.29334 1.07956 1.33854 0.86245 0.78976 0.79210 0.82246 1.18300 1.19598 1.19890 1.20961 1.00726 1.04649 0.98602 1.20392 0.94307 0.97869 0.95645 0.89260 0.90885 0.91579 0.91553 0.90892 0.89212 0.77168 0.76555 0.92149 0.92082 0.89335 0.86256 0.90713 0.88748 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.30 37.16 0.31 -1.03 16 2 C -0.08 -0.95 0.81 -156.81 -0.13 -1.08 16 3 C -0.14 -1.37 8.30 37.16 0.31 -1.06 16 4 C 0.52 6.67 6.74 -10.99 -0.07 6.60 16 5 N -0.85 -6.13 8.66 31.22 0.27 -5.86 16 6 O -0.50 -9.05 15.02 -18.95 -0.28 -9.33 16 7 C 0.46 7.97 6.55 36.01 0.24 8.21 16 8 O -0.48 -9.92 13.93 -26.86 -0.37 -10.30 16 9 O -0.35 -6.44 10.01 -39.25 -0.39 -6.83 16 10 C 0.14 2.67 5.58 36.00 0.20 2.87 16 11 C -0.23 -5.15 5.54 -104.33 -0.58 -5.73 16 12 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 13 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 14 C 0.12 3.07 5.58 -106.82 -0.60 2.47 16 15 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 16 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 17 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 18 N -0.79 -19.60 10.95 55.55 0.61 -18.99 16 19 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 24 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 25 H 0.09 0.92 8.11 -51.93 -0.42 0.50 16 26 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.45 7.56 -51.93 -0.39 0.05 16 30 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.40 1.56 7.66 -40.82 -0.31 1.25 16 32 H 0.40 2.41 8.93 -40.82 -0.36 2.05 16 33 H 0.06 1.14 8.07 -51.92 -0.42 0.72 16 34 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 37 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -32.61 335.83 -7.51 -40.12 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.13 Total: 6.77 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.24 Total: -13.60 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.88 Total: -24.84 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.05 Total: -26.46 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.61 -7.51 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769677286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.306 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds