Wall clock time and date at job start Tue Mar 31 2020 07:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 C 1.50700 * 109.46704 * 239.99891 * 2 1 3 5 5 N 1.34775 * 119.99748 * 60.00435 * 4 2 1 6 6 O 1.21278 * 119.99970 * 239.99690 * 4 2 1 7 7 C 1.50702 * 109.47191 * 120.00287 * 2 1 3 8 8 O 1.20822 * 120.00052 * 119.99715 * 7 2 1 9 9 O 1.34227 * 119.99544 * 299.99732 * 7 2 1 10 10 C 1.45205 * 116.99795 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47141 * 180.02562 * 10 9 7 12 12 C 1.38638 * 119.74606 * 269.72300 * 11 10 9 13 13 C 1.37621 * 120.24755 * 179.72019 * 12 11 10 14 14 C 1.40718 * 119.74108 * 0.57711 * 13 12 11 15 15 C 1.41399 * 120.24264 * 179.67662 * 14 13 12 16 16 H 1.08000 * 119.99997 * 204.39703 * 15 14 13 17 17 C 1.39945 * 119.99725 * 24.40249 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.85665 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.85493 * 17 15 14 20 20 H 1.48499 * 109.47149 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47189 * 120.00075 * 19 17 15 22 22 H 1.48505 * 109.47249 * 240.00131 * 19 17 15 23 23 C 1.40713 * 119.51470 * 359.70015 * 14 13 12 24 24 C 1.37621 * 119.74491 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.46940 * 299.99812 * 1 2 3 26 26 H 1.08993 * 109.47075 * 59.99923 * 1 2 3 27 27 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46756 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46822 * 300.00380 * 3 2 1 30 30 H 1.09003 * 109.47121 * 60.00298 * 3 2 1 31 31 H 0.96995 * 120.00385 * 359.97438 * 5 4 2 32 32 H 0.97007 * 120.00193 * 180.02562 * 5 4 2 33 33 H 1.09007 * 109.46874 * 299.99831 * 10 9 7 34 34 H 1.08999 * 109.46972 * 59.99668 * 10 9 7 35 35 H 1.07996 * 119.87536 * 359.97438 * 12 11 10 36 36 H 1.08002 * 120.12997 * 180.27512 * 13 12 11 37 37 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.13056 * 179.97438 * 23 14 13 39 39 H 1.07993 * 119.87567 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7067 -0.2499 -2.4545 6 8 2.7296 -1.6965 -1.1192 7 6 2.0324 -0.7105 1.2304 8 8 2.7270 -1.6928 1.1195 9 8 1.7082 -0.2518 2.4495 10 6 2.2278 -0.9857 3.5896 11 6 1.7628 -0.3293 4.8639 12 6 2.5357 0.6620 5.4488 13 6 2.1181 1.2724 6.6094 14 6 0.9075 0.8782 7.2089 15 6 0.4717 1.4935 8.4051 16 1 -0.2010 0.9694 9.0678 17 6 0.9121 2.7815 8.7301 18 7 1.4257 3.5502 7.8045 19 14 0.7663 3.4031 10.4855 20 1 0.1566 2.3487 11.3350 21 1 2.1163 3.7380 11.0058 22 1 -0.0892 4.6167 10.5115 23 6 0.1341 -0.1330 6.6095 24 6 0.5685 -0.7256 5.4458 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1488 0.5385 -2.5435 32 1 2.0296 -0.7074 -3.2467 33 1 1.8643 -2.0129 3.5568 34 1 3.3173 -0.9847 3.5565 35 1 3.4669 0.9591 4.9897 36 1 2.7195 2.0475 7.0610 37 1 1.7313 4.4428 8.0298 38 1 -0.7964 -0.4436 7.0613 39 1 -0.0236 -1.5016 4.9838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769677286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:21 Heat of formation + Delta-G solvation = -137.025462 kcal Electronic energy + Delta-G solvation = -22648.707517 eV Core-core repulsion = 19133.776592 eV Total energy + Delta-G solvation = -3514.930925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.09310 -40.33848 -39.39485 -37.37217 -36.29603 -35.64242 -34.12472 -32.53000 -31.22894 -28.99612 -28.42437 -26.03242 -25.26201 -23.51187 -22.94235 -21.82450 -20.77801 -19.26688 -18.85179 -18.35526 -17.48111 -17.23442 -17.20644 -16.87155 -15.98745 -15.88710 -15.58723 -15.36935 -15.16509 -14.55973 -14.15062 -14.11689 -13.85932 -13.55698 -13.47786 -13.36249 -13.20528 -13.11964 -12.83366 -12.67529 -12.59057 -12.36037 -12.08887 -11.68774 -11.55598 -11.38558 -11.28783 -11.04325 -10.71234 -10.67445 -9.43627 -9.32909 -8.68303 -6.38951 0.71445 1.11310 1.16931 1.38455 1.41914 1.54090 1.55028 1.75202 2.20307 2.48774 2.71520 3.46779 3.64423 3.74523 3.78442 3.99255 4.08668 4.09496 4.45000 4.48636 4.54656 4.63227 4.63571 4.71192 4.77132 5.00954 5.12614 5.16650 5.17684 5.30471 5.39519 5.49289 5.65440 5.87837 5.89167 6.06110 6.14977 6.32016 6.39314 6.64715 6.76757 6.89109 6.97423 7.32049 8.28450 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033290 B = 0.003073 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.879081 B = 9110.250303 C = 9393.225724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C -0.138 4.138 4 C 0.524 3.476 5 N -0.822 5.822 6 O -0.562 6.562 7 C 0.453 3.547 8 O -0.515 6.515 9 O -0.351 6.351 10 C 0.140 3.860 11 C -0.228 4.228 12 C -0.080 4.080 13 C -0.192 4.192 14 C 0.088 3.912 15 C -0.491 4.491 16 H 0.079 0.921 17 C 0.036 3.964 18 N -0.816 5.816 19 Si 0.984 3.016 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.264 1.264 23 C -0.243 4.243 24 C -0.064 4.064 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.420 0.580 32 H 0.414 0.586 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.291 0.709 38 H 0.103 0.897 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 1.424 -16.196 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 C -0.195 4.195 4 C 0.307 3.693 5 N -0.389 5.389 6 O -0.439 6.439 7 C 0.295 3.705 8 O -0.402 6.402 9 O -0.268 6.268 10 C 0.068 3.932 11 C -0.229 4.229 12 C -0.098 4.098 13 C -0.211 4.211 14 C 0.086 3.914 15 C -0.520 4.520 16 H 0.097 0.903 17 C -0.180 4.180 18 N -0.441 5.441 19 Si 0.804 3.196 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.189 1.189 23 C -0.263 4.263 24 C -0.082 4.082 25 H 0.101 0.899 26 H 0.137 0.863 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.253 0.747 32 H 0.246 0.754 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.208 0.746 -15.989 16.158 hybrid contribution 0.165 0.202 0.613 0.666 sum -2.043 0.948 -15.376 15.540 Atomic orbital electron populations 1.21950 0.87241 1.03742 1.06535 1.20684 1.01183 0.98309 0.87612 1.21948 1.01508 0.89574 1.06503 1.20023 0.79680 0.83676 0.85956 1.43462 1.55262 1.34054 1.06078 1.90886 1.38529 1.27550 1.86914 1.23796 0.77859 0.82950 0.85881 1.90750 1.35654 1.26515 1.87323 1.86644 1.69550 1.56048 1.14555 1.21538 0.97490 0.93747 0.80423 1.18926 1.00192 1.05843 0.97976 1.20751 0.98414 0.95022 0.95621 1.21252 0.97789 1.03420 0.98647 1.18038 0.90595 0.90611 0.92168 1.19946 1.26392 1.00373 1.05302 0.90252 1.26804 0.91891 0.96236 1.03107 1.69872 1.29778 1.08601 1.35865 0.85133 0.79192 0.78645 0.76614 1.18157 1.18919 1.18859 1.21163 1.01110 1.04681 0.99313 1.20682 0.94533 0.98036 0.94976 0.89853 0.86283 0.92509 0.92701 0.86239 0.89953 0.74700 0.75365 0.91420 0.91933 0.87760 0.87721 0.89846 0.87859 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.30 71.98 0.60 -1.63 16 2 C -0.07 -1.66 0.81 -53.67 -0.04 -1.70 16 3 C -0.14 -2.33 8.30 71.98 0.60 -1.73 16 4 C 0.52 12.39 6.74 87.66 0.59 12.98 16 5 N -0.82 -8.93 8.66 -173.54 -1.50 -10.44 16 6 O -0.56 -20.39 15.02 20.42 0.31 -20.08 16 7 C 0.45 15.55 6.55 71.24 0.47 16.02 16 8 O -0.51 -21.75 13.93 29.73 0.41 -21.33 16 9 O -0.35 -12.82 10.01 -51.39 -0.51 -13.33 16 10 C 0.14 5.44 5.58 71.23 0.40 5.84 16 11 C -0.23 -10.01 5.54 -19.68 -0.11 -10.12 16 12 C -0.08 -3.73 9.67 22.22 0.21 -3.52 16 13 C -0.19 -10.03 8.70 22.73 0.20 -9.83 16 14 C 0.09 4.72 5.58 -21.29 -0.12 4.60 16 15 C -0.49 -25.93 9.05 23.46 0.21 -25.72 16 16 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 17 C 0.04 1.75 5.14 85.26 0.44 2.19 16 18 N -0.82 -41.46 10.95 21.83 0.24 -41.22 16 19 Si 0.98 36.95 29.59 68.60 2.03 38.98 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 23 C -0.24 -11.82 9.80 22.73 0.22 -11.60 16 24 C -0.06 -2.82 9.67 22.22 0.21 -2.61 16 25 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 26 H 0.12 0.81 7.56 -2.39 -0.02 0.79 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.12 0.87 7.56 -2.39 -0.02 0.85 16 30 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 31 H 0.42 1.17 7.66 -92.71 -0.71 0.46 16 32 H 0.41 3.64 8.93 -92.70 -0.83 2.81 16 33 H 0.07 2.52 8.07 -2.38 -0.02 2.50 16 34 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 35 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 37 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 38 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -74.61 335.83 4.40 -70.21 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.45 Total: 24.02 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.88 Total: -26.82 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -1.26 Total: -51.65 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: 0.21 Total: -54.74 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -74.61 4.40 -70.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769677286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.816 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds