Wall clock time and date at job start Tue Mar 31 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46658 * 2 1 4 4 C 1.37962 * 120.07296 * 96.30544 * 3 2 1 5 5 C 1.38348 * 120.14866 * 179.71780 * 4 3 2 6 6 C 1.38383 * 120.30371 * 0.27796 * 5 4 3 7 7 C 1.37930 * 120.14995 * 0.02562 * 6 5 4 8 8 C 1.39610 * 120.07698 * 276.59267 * 3 2 1 9 9 C 1.47725 * 120.15327 * 0.02562 * 8 3 2 10 10 O 1.21472 * 119.99603 * 6.22060 * 9 8 3 11 11 O 1.34710 * 120.00227 * 186.22089 * 9 8 3 12 12 C 1.45198 * 116.99925 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.46699 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00389 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00086 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47065 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00312 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99923 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99733 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47278 * 89.99910 * 21 19 17 23 23 H 1.48504 * 109.46934 * 210.00236 * 21 19 17 24 24 H 1.48500 * 109.47115 * 329.99976 * 21 19 17 25 25 H 1.09004 * 109.47382 * 60.00110 * 1 2 3 26 26 H 1.09007 * 109.47341 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47033 * 299.99406 * 1 2 3 28 28 H 1.09005 * 109.46654 * 240.00379 * 2 1 3 29 29 H 1.08989 * 109.46979 * 120.00104 * 2 1 3 30 30 H 1.08005 * 119.92368 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.84780 * 180.25355 * 5 4 3 32 32 H 1.08001 * 119.92405 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.07568 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47037 * 299.99789 * 12 11 9 35 35 H 1.08991 * 109.47138 * 59.99752 * 12 11 9 36 36 H 0.97007 * 120.00134 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.46916 * 299.99880 * 16 15 13 38 38 H 1.08999 * 109.47363 * 60.00317 * 16 15 13 39 39 H 0.97002 * 120.00089 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3863 2.0290 1.1867 5 6 2.8530 3.3314 1.1879 6 6 2.9628 4.0349 0.0013 7 6 2.6064 3.4411 -1.1916 8 6 2.1347 2.1268 -1.2001 9 6 1.7509 1.4845 -2.4739 10 8 1.2398 0.3825 -2.4685 11 8 1.9677 2.1208 -3.6413 12 6 1.5649 1.4300 -4.8532 13 6 1.8836 2.2885 -6.0502 14 8 2.3989 3.3756 -5.8968 15 7 1.5959 1.8481 -7.2910 16 6 1.9052 2.6828 -8.4546 17 6 1.4873 1.9658 -9.7125 18 1 1.0368 0.9861 -9.6514 19 6 1.6800 2.5605 -10.9414 20 7 2.2281 3.7536 -11.0158 21 14 1.1614 1.6720 -12.5006 22 1 -0.2434 2.0253 -12.8277 23 1 2.0478 2.0791 -13.6204 24 1 1.2675 0.2054 -12.2933 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.3028 1.4857 2.1164 31 1 3.1327 3.8013 2.1192 32 1 3.3283 5.0511 0.0092 33 1 2.6929 3.9911 -2.1171 34 1 2.1044 0.4859 -4.9297 35 1 0.4932 1.2344 -4.8209 36 1 1.1841 0.9784 -7.4137 37 1 1.3653 3.6266 -8.3784 38 1 2.9769 2.8787 -8.4867 39 1 2.3641 4.1719 -11.8803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770119469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:32 Heat of formation + Delta-G solvation = -104.321346 kcal Electronic energy + Delta-G solvation = -22091.650135 eV Core-core repulsion = 18578.137367 eV Total energy + Delta-G solvation = -3513.512768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89993 -39.32110 -38.49551 -36.46615 -34.27277 -34.07464 -32.42732 -31.75292 -29.75721 -29.08945 -26.73701 -24.67706 -23.70179 -22.65301 -21.68096 -20.67810 -19.93485 -18.15596 -17.46060 -16.74787 -16.61905 -16.02683 -15.68968 -15.46975 -15.09377 -14.76690 -14.57610 -14.19521 -13.99591 -13.64173 -13.42751 -13.03673 -12.87313 -12.61177 -12.33911 -12.00850 -11.95681 -11.86248 -11.79816 -11.31121 -11.06353 -11.02121 -10.92136 -10.64097 -10.35463 -10.14812 -9.45217 -9.30340 -9.19051 -9.03973 -8.79309 -8.00083 -6.20638 -4.28051 0.48596 1.07911 2.38746 2.41896 3.16616 3.22513 3.28778 3.31125 3.51506 3.95851 4.31826 4.43676 4.51039 4.66915 4.74510 4.95864 5.06642 5.15547 5.18605 5.23348 5.24390 5.30068 5.32353 5.33409 5.60000 5.73417 5.78858 5.92225 6.00628 6.09297 6.15905 6.25592 6.44670 6.60133 7.21413 7.29581 7.44645 7.58224 7.68737 7.90903 8.48722 8.69966 8.95125 9.38358 10.89526 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.002684 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.339887 B =10429.144443 C =11185.579848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.016 4.016 4 C -0.137 4.137 5 C -0.082 4.082 6 C -0.140 4.140 7 C -0.054 4.054 8 C -0.126 4.126 9 C 0.505 3.495 10 O -0.500 6.500 11 O -0.325 6.325 12 C 0.050 3.950 13 C 0.500 3.500 14 O -0.535 6.535 15 N -0.706 5.706 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.393 0.607 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -5.133 24.425 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.016 4.016 4 C -0.155 4.155 5 C -0.100 4.100 6 C -0.158 4.158 7 C -0.072 4.072 8 C -0.127 4.127 9 C 0.351 3.649 10 O -0.390 6.390 11 O -0.240 6.240 12 C -0.027 4.027 13 C 0.283 3.717 14 O -0.412 6.412 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.226 0.774 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.699 -4.506 24.322 24.745 hybrid contribution -0.480 -0.863 -1.049 1.441 sum -1.179 -5.369 23.273 23.913 Atomic orbital electron populations 1.21604 0.94085 1.01864 1.01657 1.20849 0.97046 0.91672 1.03722 1.20057 0.93951 0.96313 0.91265 1.20998 1.01618 0.95530 0.97304 1.21434 0.95921 0.94210 0.98430 1.21190 1.01745 1.00754 0.92138 1.21653 0.92766 0.93277 0.99553 1.18960 1.07963 0.95710 0.90070 1.21238 0.75661 0.83611 0.84438 1.90781 1.40475 1.20037 1.87705 1.86602 1.75664 1.47748 1.13994 1.22867 1.02170 0.95830 0.81843 1.19886 0.80487 0.87207 0.84165 1.90703 1.43081 1.21602 1.85805 1.46363 1.61236 1.22149 1.05901 1.19175 0.97026 0.90484 0.80210 1.21209 1.42592 1.03929 0.90622 0.91765 1.24955 0.94751 0.94938 0.99350 1.69972 1.42191 1.14408 1.25629 0.86389 0.78518 0.79762 0.82099 1.20418 1.20967 1.19713 0.92024 0.92371 0.93430 0.88302 0.91571 0.85207 0.85423 0.85052 0.83811 0.88451 0.88445 0.77414 0.95259 0.95248 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.45 37.16 0.35 -0.96 16 2 C -0.10 -0.95 5.32 -27.88 -0.15 -1.10 16 3 C -0.02 -0.16 5.17 -104.21 -0.54 -0.70 16 4 C -0.14 -1.14 9.66 -39.64 -0.38 -1.53 16 5 C -0.08 -0.63 10.04 -39.49 -0.40 -1.03 16 6 C -0.14 -1.24 10.03 -39.64 -0.40 -1.64 16 7 C -0.05 -0.61 9.62 -39.17 -0.38 -0.99 16 8 C -0.13 -1.55 5.87 -104.98 -0.62 -2.17 16 9 C 0.50 7.19 7.81 34.61 0.27 7.46 16 10 O -0.50 -7.28 11.49 -19.24 -0.22 -7.50 16 11 O -0.33 -5.21 9.03 -47.20 -0.43 -5.63 16 12 C 0.05 0.77 5.95 36.01 0.21 0.98 16 13 C 0.50 9.96 7.91 -10.98 -0.09 9.87 16 14 O -0.53 -12.96 16.50 -14.10 -0.23 -13.19 16 15 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 16 C 0.25 6.55 5.43 -5.20 -0.03 6.52 16 17 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 21 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H 0.06 0.72 6.76 -51.93 -0.35 0.37 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 1.15 5.86 -51.93 -0.30 0.85 16 29 H 0.07 0.52 8.04 -51.94 -0.42 0.10 16 30 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 31 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.14 1.71 7.63 -52.48 -0.40 1.30 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -32.62 339.23 -8.10 -40.72 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.15 Total: 3.32 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.55 Total: 1.49 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.40 Total: -39.93 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.88 Total: -26.32 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.62 -8.10 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770119469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.604 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds