Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46658 * 2 1 4 4 C 1.37962 * 120.07296 * 96.30544 * 3 2 1 5 5 C 1.38348 * 120.14866 * 179.71780 * 4 3 2 6 6 C 1.38383 * 120.30371 * 0.27796 * 5 4 3 7 7 C 1.37930 * 120.14995 * 0.02562 * 6 5 4 8 8 C 1.39610 * 120.07698 * 276.59267 * 3 2 1 9 9 C 1.47725 * 120.15327 * 0.02562 * 8 3 2 10 10 O 1.21472 * 119.99603 * 6.22060 * 9 8 3 11 11 O 1.34710 * 120.00227 * 186.22089 * 9 8 3 12 12 C 1.45198 * 116.99925 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.46699 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00389 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00086 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47065 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00312 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99923 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99733 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47278 * 89.99910 * 21 19 17 23 23 H 1.48504 * 109.46934 * 210.00236 * 21 19 17 24 24 H 1.48500 * 109.47115 * 329.99976 * 21 19 17 25 25 H 1.09004 * 109.47382 * 60.00110 * 1 2 3 26 26 H 1.09007 * 109.47341 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47033 * 299.99406 * 1 2 3 28 28 H 1.09005 * 109.46654 * 240.00379 * 2 1 3 29 29 H 1.08989 * 109.46979 * 120.00104 * 2 1 3 30 30 H 1.08005 * 119.92368 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.84780 * 180.25355 * 5 4 3 32 32 H 1.08001 * 119.92405 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.07568 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47037 * 299.99789 * 12 11 9 35 35 H 1.08991 * 109.47138 * 59.99752 * 12 11 9 36 36 H 0.97007 * 120.00134 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.46916 * 299.99880 * 16 15 13 38 38 H 1.08999 * 109.47363 * 60.00317 * 16 15 13 39 39 H 0.97002 * 120.00089 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3863 2.0290 1.1867 5 6 2.8530 3.3314 1.1879 6 6 2.9628 4.0349 0.0013 7 6 2.6064 3.4411 -1.1916 8 6 2.1347 2.1268 -1.2001 9 6 1.7509 1.4845 -2.4739 10 8 1.2398 0.3825 -2.4685 11 8 1.9677 2.1208 -3.6413 12 6 1.5649 1.4300 -4.8532 13 6 1.8836 2.2885 -6.0502 14 8 2.3989 3.3756 -5.8968 15 7 1.5959 1.8481 -7.2910 16 6 1.9052 2.6828 -8.4546 17 6 1.4873 1.9658 -9.7125 18 1 1.0368 0.9861 -9.6514 19 6 1.6800 2.5605 -10.9414 20 7 2.2281 3.7536 -11.0158 21 14 1.1614 1.6720 -12.5006 22 1 -0.2434 2.0253 -12.8277 23 1 2.0478 2.0791 -13.6204 24 1 1.2675 0.2054 -12.2933 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.3028 1.4857 2.1164 31 1 3.1327 3.8013 2.1192 32 1 3.3283 5.0511 0.0092 33 1 2.6929 3.9911 -2.1171 34 1 2.1044 0.4859 -4.9297 35 1 0.4932 1.2344 -4.8209 36 1 1.1841 0.9784 -7.4137 37 1 1.3653 3.6266 -8.3784 38 1 2.9769 2.8787 -8.4867 39 1 2.3641 4.1719 -11.8803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770119469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = -124.246745 kcal Electronic energy + Delta-G solvation = -22092.514165 eV Core-core repulsion = 18578.137367 eV Total energy + Delta-G solvation = -3514.376798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95180 -40.63005 -39.73188 -37.62177 -36.20556 -34.85522 -34.43375 -32.57407 -30.77481 -30.38190 -28.51964 -25.64305 -24.61790 -24.37552 -22.64430 -21.68008 -21.51475 -19.36837 -18.93150 -18.07820 -17.83877 -17.37276 -17.00943 -16.72154 -16.30619 -16.22215 -16.05172 -15.30749 -14.88586 -14.74345 -14.49339 -14.37480 -14.07498 -14.01571 -13.75503 -13.61560 -13.13097 -12.95024 -12.72742 -12.70049 -12.57861 -12.24054 -12.21249 -11.90042 -11.70350 -11.51293 -11.12190 -10.90768 -10.82960 -10.05268 -9.95094 -9.76970 -8.30725 -6.47395 -0.34011 0.35741 1.21509 1.43792 1.44217 1.45634 1.53407 1.57111 2.32929 2.55479 2.75068 3.04561 3.55208 3.69648 3.73098 3.87194 4.02176 4.03489 4.10862 4.31377 4.42964 4.51458 4.54447 4.59922 4.86381 4.99236 5.03667 5.08259 5.11058 5.19913 5.20226 5.34026 5.39969 5.43989 5.46886 5.59890 5.61972 5.80704 5.90953 6.56143 6.61699 6.76455 7.18834 7.33701 8.81497 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.002684 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.339887 B =10429.144443 C =11185.579848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C -0.025 4.025 4 C -0.132 4.132 5 C -0.070 4.070 6 C -0.141 4.141 7 C -0.074 4.074 8 C -0.152 4.152 9 C 0.503 3.497 10 O -0.507 6.507 11 O -0.347 6.347 12 C 0.062 3.938 13 C 0.500 3.500 14 O -0.583 6.583 15 N -0.698 5.698 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.086 0.914 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.985 3.015 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.255 1.255 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.413 0.587 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 -6.947 26.443 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.025 4.025 4 C -0.150 4.150 5 C -0.088 4.088 6 C -0.159 4.159 7 C -0.092 4.092 8 C -0.153 4.153 9 C 0.349 3.651 10 O -0.398 6.398 11 O -0.263 6.263 12 C -0.014 4.014 13 C 0.285 3.715 14 O -0.464 6.464 15 N -0.349 5.349 16 C 0.144 3.856 17 C -0.595 4.595 18 H 0.104 0.896 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.179 1.179 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.179 0.821 31 H 0.182 0.818 32 H 0.169 0.831 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.249 0.751 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.344 -6.371 26.370 27.162 hybrid contribution -0.252 -0.242 -1.534 1.573 sum -1.596 -6.613 24.837 25.751 Atomic orbital electron populations 1.21574 0.94103 1.02159 1.01073 1.20831 0.96994 0.91450 1.03868 1.20260 0.94259 0.96616 0.91367 1.21390 1.00187 0.95921 0.97487 1.21874 0.93899 0.93810 0.99225 1.21480 1.00992 1.01755 0.91691 1.21633 0.94226 0.93260 1.00098 1.19056 1.10048 0.96457 0.89766 1.21654 0.75423 0.83622 0.84359 1.90769 1.40995 1.20285 1.87703 1.86600 1.76274 1.48692 1.14695 1.22732 1.04037 0.94908 0.79767 1.20675 0.78798 0.86913 0.85074 1.90679 1.45078 1.24051 1.86581 1.46036 1.61438 1.22420 1.05047 1.18631 0.94179 0.90132 0.82628 1.21609 1.42398 1.04743 0.90725 0.89590 1.26061 0.94454 0.95622 1.03415 1.70131 1.43594 1.16418 1.26733 0.85146 0.78069 0.79059 0.76884 1.19611 1.20981 1.17910 0.94540 0.91637 0.91997 0.90494 0.89013 0.82127 0.81763 0.83068 0.85687 0.85793 0.85822 0.75097 0.98984 0.98967 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.45 71.98 0.68 -1.71 16 2 C -0.09 -1.73 5.32 29.85 0.16 -1.57 16 3 C -0.02 -0.48 5.17 -19.60 -0.10 -0.59 16 4 C -0.13 -1.78 9.66 22.23 0.21 -1.56 16 5 C -0.07 -0.84 10.04 22.33 0.22 -0.62 16 6 C -0.14 -2.28 10.03 22.23 0.22 -2.05 16 7 C -0.07 -1.70 9.62 22.54 0.22 -1.48 16 8 C -0.15 -3.78 5.87 -20.10 -0.12 -3.90 16 9 C 0.50 14.61 7.81 70.33 0.55 15.16 16 10 O -0.51 -14.77 11.49 19.93 0.23 -14.54 16 11 O -0.35 -11.44 9.03 -49.81 -0.45 -11.89 16 12 C 0.06 1.88 5.95 71.24 0.42 2.30 16 13 C 0.50 20.49 7.91 87.66 0.69 21.18 16 14 O -0.58 -29.85 16.50 15.78 0.26 -29.59 16 15 N -0.70 -29.22 5.55 -466.80 -2.59 -31.81 16 16 C 0.27 14.52 5.43 85.63 0.46 14.98 16 17 C -0.56 -29.95 9.28 25.60 0.24 -29.72 16 18 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.23 5.46 84.66 0.46 0.70 16 20 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 21 Si 0.99 42.02 29.54 68.60 2.03 44.05 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 25 H 0.04 0.84 6.76 -2.39 -0.02 0.82 16 26 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.76 5.86 -2.38 -0.01 1.75 16 29 H 0.09 1.18 8.04 -2.39 -0.02 1.16 16 30 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.13 3.24 7.63 -2.91 -0.02 3.22 16 34 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.41 13.90 8.32 -92.70 -0.77 13.13 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.55 339.23 4.39 -70.16 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.30 Total: 18.04 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 4.33 Total: 11.12 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -2.30 Total: -87.34 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: 0.04 Total: -56.02 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -74.55 4.39 -70.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770119469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.090 kcal (2) G-P(sol) polarization free energy of solvation -74.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds