Wall clock time and date at job start Tue Mar 31 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40191 * 120.36710 * 2 1 4 4 C 1.35350 * 119.94886 * 179.76992 * 3 2 1 5 5 N 1.35763 * 120.69943 * 0.51780 * 4 3 2 6 6 C 1.46503 * 119.62184 * 179.76179 * 5 4 3 7 7 C 1.50700 * 109.47110 * 269.72092 * 6 5 4 8 8 O 1.20835 * 119.99600 * 0.02562 * 7 6 5 9 9 O 1.34228 * 120.00368 * 180.02562 * 7 6 5 10 10 C 1.45198 * 117.00205 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.50701 * 115.55544 * 294.88682 * 11 10 9 13 13 H 1.07995 * 119.99892 * 95.15843 * 12 11 10 14 14 C 1.37875 * 119.99625 * 274.89404 * 12 11 10 15 15 N 1.31516 * 120.00645 * 6.38641 * 14 12 11 16 16 Si 1.86804 * 119.99966 * 186.39037 * 14 12 11 17 17 H 1.48497 * 109.46911 * 59.99497 * 16 14 12 18 18 H 1.48501 * 109.47278 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46934 * 299.99733 * 16 14 12 20 20 C 1.52999 * 117.50107 * 80.55676 * 11 10 9 21 21 C 1.53002 * 117.49851 * 149.21518 * 11 10 9 22 22 C 1.34657 * 120.75060 * 359.47963 * 5 4 3 23 23 O 1.22064 * 119.98490 * 180.27872 * 22 5 4 24 24 C 1.36403 * 120.36563 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46972 * 269.97154 * 1 2 3 26 26 H 1.08996 * 109.47216 * 29.97210 * 1 2 3 27 27 H 1.09001 * 109.47476 * 149.97481 * 1 2 3 28 28 H 1.07998 * 120.02752 * 0.05440 * 3 2 1 29 29 H 1.07999 * 119.65230 * 180.28108 * 4 3 2 30 30 H 1.09004 * 109.47197 * 149.72690 * 6 5 4 31 31 H 1.08998 * 109.47207 * 29.72571 * 6 5 4 32 32 H 1.09001 * 109.46840 * 59.99792 * 10 9 7 33 33 H 1.09000 * 109.47129 * 299.99899 * 10 9 7 34 34 H 0.96998 * 120.00543 * 180.02562 * 15 14 12 35 35 H 1.08998 * 117.50651 * 215.00344 * 20 11 10 36 36 H 1.09007 * 117.49575 * 0.02562 * 20 11 10 37 37 H 1.09004 * 117.50100 * 359.97438 * 21 11 10 38 38 H 1.09000 * 117.49932 * 144.97481 * 21 11 10 39 39 H 1.07993 * 120.34880 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0273 -0.0011 6 6 5.7187 0.0442 -0.0011 7 6 6.2210 0.0501 -1.4219 8 8 5.4358 0.0415 -2.3403 9 8 7.5406 0.0648 -1.6673 10 6 7.9522 0.0702 -3.0597 11 6 9.4799 0.0877 -3.1398 12 6 10.1449 1.3285 -2.6018 13 1 10.5073 1.3491 -1.5847 14 6 10.2956 2.4354 -3.4100 15 7 9.7496 2.4554 -4.6063 16 14 11.2753 3.9066 -2.8058 17 1 12.6684 3.4859 -2.5100 18 1 11.2882 4.9575 -3.8550 19 1 10.6485 4.4458 -1.5721 20 6 10.2124 -1.2428 -2.9551 21 6 10.1323 -0.5988 -4.3415 22 6 3.6017 -1.1508 -0.0011 23 8 4.2312 -2.1965 -0.0012 24 6 2.1966 -1.1769 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6822 2.1486 0.0009 29 1 4.1103 2.1343 0.0093 30 1 6.0923 -0.8416 0.5126 31 1 6.0718 0.9383 0.5128 32 1 7.5526 0.9561 -3.5532 33 1 7.5723 -0.8237 -3.5543 34 1 9.8560 3.2340 -5.1750 35 1 11.1751 -1.2208 -2.4445 36 1 9.6058 -2.1307 -2.7769 37 1 9.4730 -1.0634 -5.0748 38 1 11.0421 -0.1528 -4.7432 39 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774117974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:09 Heat of formation + Delta-G solvation = -61.288448 kcal Electronic energy + Delta-G solvation = -22815.005108 eV Core-core repulsion = 19303.358387 eV Total energy + Delta-G solvation = -3511.646722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56059 -39.66609 -37.08553 -36.90806 -35.59577 -35.10784 -32.01294 -30.78106 -29.63264 -27.79088 -26.33442 -25.20125 -23.82123 -22.00470 -21.23029 -20.60256 -19.31772 -17.65981 -17.63054 -17.40257 -16.48351 -16.13977 -15.81764 -15.61255 -14.87466 -14.63838 -14.35910 -14.20519 -13.88039 -13.58592 -13.32884 -12.95448 -12.67698 -12.38551 -12.26722 -11.92348 -11.82282 -11.74998 -11.66675 -11.01923 -10.92069 -10.61148 -10.39727 -10.29939 -10.03296 -9.94815 -9.85161 -9.58049 -8.87757 -8.51992 -8.26252 -8.06498 -6.11856 -4.17761 0.70323 1.79741 2.32746 2.55179 3.18650 3.25716 3.31173 3.33405 3.66930 4.34038 4.38677 4.46481 4.63390 4.82364 4.99981 5.06087 5.08069 5.17693 5.26041 5.28300 5.35352 5.43883 5.58549 5.81487 5.93543 5.94573 6.20413 6.23094 6.28429 6.39683 6.47441 6.59090 6.70811 6.97246 6.99822 7.13247 7.31367 7.41849 7.80976 7.97748 8.21446 8.35037 8.83995 9.48224 10.97437 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.003688 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.405888 B = 7590.652823 C = 8233.948917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.015 3.985 3 C -0.231 4.231 4 C 0.147 3.853 5 N -0.484 5.484 6 C 0.097 3.903 7 C 0.442 3.558 8 O -0.511 6.511 9 O -0.332 6.332 10 C 0.118 3.882 11 C 0.037 3.963 12 C -0.492 4.492 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.205 4.205 21 C -0.145 4.145 22 C 0.521 3.479 23 O -0.550 6.550 24 C -0.249 4.249 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 -0.528 10.335 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.021 3.979 5 N -0.196 5.196 6 C -0.026 4.026 7 C 0.283 3.717 8 O -0.400 6.400 9 O -0.246 6.246 10 C 0.045 3.955 11 C 0.036 3.964 12 C -0.529 4.529 13 H 0.082 0.918 14 C -0.134 4.134 15 N -0.518 5.518 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.242 4.242 21 C -0.182 4.182 22 C 0.324 3.676 23 O -0.432 6.432 24 C -0.270 4.270 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.163 0.837 29 H 0.181 0.819 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.741 -1.098 9.837 17.756 hybrid contribution 0.457 0.976 -0.121 1.084 sum -14.284 -0.122 9.717 17.276 Atomic orbital electron populations 1.20919 0.90399 1.03565 1.02965 1.20204 0.96728 0.92691 0.89222 1.20512 0.92294 0.98920 1.13722 1.21981 0.93686 0.89607 0.92672 1.45142 1.07318 1.07441 1.59667 1.21359 0.78668 1.08689 0.93917 1.23487 0.82793 0.73658 0.91754 1.90667 1.57340 1.45624 1.46381 1.86497 1.22192 1.81797 1.34150 1.22967 0.96769 1.00283 0.75527 1.18768 0.87236 0.91502 0.98872 1.20354 1.38157 0.95949 0.98473 0.91845 1.25026 0.95190 0.98336 0.94897 1.69988 1.42845 1.29974 1.08951 0.86637 0.80827 0.82006 0.78413 1.20099 1.21269 1.20144 1.23020 1.02438 0.97286 1.01447 1.22552 1.02572 1.03100 0.89999 1.17117 0.89396 0.82434 0.78652 1.90967 1.69148 1.30253 1.52875 1.21894 0.92170 0.99544 1.13425 0.90167 0.90759 0.90855 0.83669 0.81869 0.84275 0.84769 0.90460 0.94193 0.92797 0.89969 0.91441 0.91621 0.89367 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.03 36.01 0.36 -0.42 16 2 C 0.02 0.15 5.89 -104.55 -0.62 -0.47 16 3 C -0.23 -2.10 9.71 -39.88 -0.39 -2.49 16 4 C 0.15 1.52 10.28 -16.84 -0.17 1.35 16 5 N -0.48 -6.61 2.07 -121.06 -0.25 -6.86 16 6 C 0.10 1.32 5.93 -5.19 -0.03 1.29 16 7 C 0.44 8.43 8.02 36.01 0.29 8.71 16 8 O -0.51 -11.22 16.18 -18.76 -0.30 -11.52 16 9 O -0.33 -7.16 10.16 -39.25 -0.40 -7.56 16 10 C 0.12 2.80 5.29 37.15 0.20 3.00 16 11 C 0.04 0.91 1.61 -155.66 -0.25 0.66 16 12 C -0.49 -13.16 8.77 -34.44 -0.30 -13.46 16 13 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 14 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 15 N -0.88 -24.47 12.93 55.43 0.72 -23.75 16 16 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.20 -4.50 9.96 -26.70 -0.27 -4.76 16 21 C -0.14 -3.37 9.43 -26.69 -0.25 -3.62 16 22 C 0.52 8.31 7.40 -15.45 -0.11 8.20 16 23 O -0.55 -10.79 16.64 4.86 0.08 -10.71 16 24 C -0.25 -3.17 9.65 -39.38 -0.38 -3.55 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 27 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.16 1.18 8.03 -52.49 -0.42 0.76 16 30 H 0.14 1.85 7.39 -51.93 -0.38 1.47 16 31 H 0.13 1.27 8.01 -51.93 -0.42 0.85 16 32 H 0.08 2.01 8.13 -51.93 -0.42 1.59 16 33 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 39 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -34.17 344.99 -7.41 -41.58 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.41 Total: 1.95 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.02 Total: -3.82 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.47 Total: -30.62 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.62 Total: -29.79 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.17 -7.41 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774117974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.712 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds