Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40191 * 120.36710 * 2 1 4 4 C 1.35350 * 119.94886 * 179.76992 * 3 2 1 5 5 N 1.35763 * 120.69943 * 0.51780 * 4 3 2 6 6 C 1.46503 * 119.62184 * 179.76179 * 5 4 3 7 7 C 1.50700 * 109.47110 * 269.72092 * 6 5 4 8 8 O 1.20835 * 119.99600 * 0.02562 * 7 6 5 9 9 O 1.34228 * 120.00368 * 180.02562 * 7 6 5 10 10 C 1.45198 * 117.00205 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.50701 * 115.55544 * 294.88682 * 11 10 9 13 13 H 1.07995 * 119.99892 * 95.15843 * 12 11 10 14 14 C 1.37875 * 119.99625 * 274.89404 * 12 11 10 15 15 N 1.31516 * 120.00645 * 6.38641 * 14 12 11 16 16 Si 1.86804 * 119.99966 * 186.39037 * 14 12 11 17 17 H 1.48497 * 109.46911 * 59.99497 * 16 14 12 18 18 H 1.48501 * 109.47278 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46934 * 299.99733 * 16 14 12 20 20 C 1.52999 * 117.50107 * 80.55676 * 11 10 9 21 21 C 1.53002 * 117.49851 * 149.21518 * 11 10 9 22 22 C 1.34657 * 120.75060 * 359.47963 * 5 4 3 23 23 O 1.22064 * 119.98490 * 180.27872 * 22 5 4 24 24 C 1.36403 * 120.36563 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46972 * 269.97154 * 1 2 3 26 26 H 1.08996 * 109.47216 * 29.97210 * 1 2 3 27 27 H 1.09001 * 109.47476 * 149.97481 * 1 2 3 28 28 H 1.07998 * 120.02752 * 0.05440 * 3 2 1 29 29 H 1.07999 * 119.65230 * 180.28108 * 4 3 2 30 30 H 1.09004 * 109.47197 * 149.72690 * 6 5 4 31 31 H 1.08998 * 109.47207 * 29.72571 * 6 5 4 32 32 H 1.09001 * 109.46840 * 59.99792 * 10 9 7 33 33 H 1.09000 * 109.47129 * 299.99899 * 10 9 7 34 34 H 0.96998 * 120.00543 * 180.02562 * 15 14 12 35 35 H 1.08998 * 117.50651 * 215.00344 * 20 11 10 36 36 H 1.09007 * 117.49575 * 0.02562 * 20 11 10 37 37 H 1.09004 * 117.50100 * 359.97438 * 21 11 10 38 38 H 1.09000 * 117.49932 * 144.97481 * 21 11 10 39 39 H 1.07993 * 120.34880 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0273 -0.0011 6 6 5.7187 0.0442 -0.0011 7 6 6.2210 0.0501 -1.4219 8 8 5.4358 0.0415 -2.3403 9 8 7.5406 0.0648 -1.6673 10 6 7.9522 0.0702 -3.0597 11 6 9.4799 0.0877 -3.1398 12 6 10.1449 1.3285 -2.6018 13 1 10.5073 1.3491 -1.5847 14 6 10.2956 2.4354 -3.4100 15 7 9.7496 2.4554 -4.6063 16 14 11.2753 3.9066 -2.8058 17 1 12.6684 3.4859 -2.5100 18 1 11.2882 4.9575 -3.8550 19 1 10.6485 4.4458 -1.5721 20 6 10.2124 -1.2428 -2.9551 21 6 10.1323 -0.5988 -4.3415 22 6 3.6017 -1.1508 -0.0011 23 8 4.2312 -2.1965 -0.0012 24 6 2.1966 -1.1769 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6822 2.1486 0.0009 29 1 4.1103 2.1343 0.0093 30 1 6.0923 -0.8416 0.5126 31 1 6.0718 0.9383 0.5128 32 1 7.5526 0.9561 -3.5532 33 1 7.5723 -0.8237 -3.5543 34 1 9.8560 3.2340 -5.1750 35 1 11.1751 -1.2208 -2.4445 36 1 9.6058 -2.1307 -2.7769 37 1 9.4730 -1.0634 -5.0748 38 1 11.0421 -0.1528 -4.7432 39 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774117974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = -80.894834 kcal Electronic energy + Delta-G solvation = -22815.855305 eV Core-core repulsion = 19303.358387 eV Total energy + Delta-G solvation = -3512.496918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.63955 -41.21903 -38.68273 -38.16221 -37.13794 -36.28573 -34.03963 -31.69902 -30.63210 -29.09476 -27.86117 -27.07159 -24.71045 -23.21056 -22.90743 -21.94927 -21.23732 -19.02338 -18.75776 -18.62821 -18.16097 -17.45977 -17.19899 -17.02871 -16.59807 -16.17156 -15.60056 -15.22049 -15.10474 -14.99440 -14.34224 -14.18519 -13.94040 -13.60481 -13.57396 -13.37820 -13.07689 -12.98379 -12.88611 -12.78693 -12.47961 -12.41646 -12.14312 -11.86755 -11.77107 -11.49768 -11.16131 -10.82257 -10.74450 -10.50614 -10.13332 -9.04910 -8.14176 -6.26704 -0.18251 0.87078 1.03572 1.21805 1.44336 1.46352 1.53767 1.87633 2.42827 2.64237 3.14352 3.33178 3.55923 3.64066 3.71848 3.83875 4.01213 4.07153 4.13850 4.29371 4.32414 4.35931 4.40682 4.60756 4.73294 4.79029 4.84591 4.87862 4.92196 5.07249 5.13384 5.22940 5.37045 5.45937 5.51605 5.58193 5.62714 5.73777 5.99543 6.33059 6.61580 6.78751 6.90118 7.42594 8.94634 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.003688 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.405888 B = 7590.652823 C = 8233.948917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 C -0.223 4.223 4 C 0.131 3.869 5 N -0.488 5.488 6 C 0.106 3.894 7 C 0.439 3.561 8 O -0.545 6.545 9 O -0.339 6.339 10 C 0.131 3.869 11 C 0.007 3.993 12 C -0.507 4.507 13 H 0.060 0.940 14 C 0.024 3.976 15 N -0.911 5.911 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.181 4.181 21 C -0.147 4.147 22 C 0.502 3.498 23 O -0.610 6.610 24 C -0.287 4.287 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.186 0.814 29 H 0.199 0.801 30 H 0.141 0.859 31 H 0.184 0.816 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.102 1.372 11.920 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 C -0.245 4.245 4 C 0.007 3.993 5 N -0.198 5.198 6 C -0.017 4.017 7 C 0.282 3.718 8 O -0.436 6.436 9 O -0.254 6.254 10 C 0.057 3.943 11 C 0.007 3.993 12 C -0.544 4.544 13 H 0.078 0.922 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.218 4.218 21 C -0.185 4.185 22 C 0.307 3.693 23 O -0.497 6.497 24 C -0.308 4.308 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.203 0.797 29 H 0.216 0.784 30 H 0.159 0.841 31 H 0.202 0.798 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.884 0.833 11.446 19.596 hybrid contribution 0.667 0.441 -0.601 1.000 sum -15.217 1.274 10.845 18.730 Atomic orbital electron populations 1.21045 0.87560 1.04659 1.04530 1.20684 0.98741 0.91897 0.85614 1.21098 0.92039 1.00122 1.11239 1.22736 0.94701 0.89542 0.92370 1.45182 1.07276 1.08016 1.59357 1.21567 0.79016 1.11083 0.90069 1.24590 0.81485 0.71959 0.93774 1.90643 1.57709 1.47134 1.48073 1.86497 1.24053 1.82251 1.32564 1.22548 0.96340 0.98658 0.76753 1.18883 0.87713 0.92417 1.00292 1.20604 1.38324 0.97033 0.98461 0.92216 1.25756 0.95977 1.00933 0.94999 1.70109 1.43965 1.30688 1.10022 0.85643 0.79465 0.78665 0.78081 1.19625 1.21203 1.19148 1.23024 1.02401 0.96453 0.99885 1.22491 1.02012 1.03369 0.90621 1.17652 0.90556 0.82432 0.78621 1.90912 1.70264 1.32167 1.56393 1.21908 0.91023 1.01073 1.16815 0.88090 0.88731 0.90731 0.79695 0.78432 0.84112 0.79847 0.93535 0.94303 0.92932 0.89235 0.89665 0.90766 0.90839 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.03 71.24 0.71 -0.44 16 2 C 0.03 0.60 5.89 -19.82 -0.12 0.49 16 3 C -0.22 -3.24 9.71 22.08 0.21 -3.03 16 4 C 0.13 2.34 10.28 83.42 0.86 3.20 16 5 N -0.49 -12.86 2.07 -655.06 -1.36 -14.22 16 6 C 0.11 2.77 5.93 85.63 0.51 3.27 16 7 C 0.44 16.77 8.02 71.24 0.57 17.34 16 8 O -0.54 -24.38 16.18 21.94 0.35 -24.03 16 9 O -0.34 -14.73 10.16 -51.40 -0.52 -15.25 16 10 C 0.13 6.37 5.29 71.98 0.38 6.75 16 11 C 0.01 0.37 1.61 -52.93 -0.08 0.29 16 12 C -0.51 -27.14 8.77 25.60 0.22 -26.92 16 13 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 14 C 0.02 1.27 5.39 84.65 0.46 1.73 16 15 N -0.91 -51.17 12.93 21.45 0.28 -50.90 16 16 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 C -0.18 -7.80 9.96 30.62 0.30 -7.49 16 21 C -0.15 -6.91 9.43 30.62 0.29 -6.62 16 22 C 0.50 16.37 7.40 84.82 0.63 17.00 16 23 O -0.61 -25.27 16.64 -5.52 -0.09 -25.37 16 24 C -0.29 -7.33 9.65 22.40 0.22 -7.12 16 25 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.09 0.57 8.10 -2.39 -0.02 0.55 16 27 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 28 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 29 H 0.20 2.03 8.03 -2.91 -0.02 2.01 16 30 H 0.14 3.73 7.39 -2.39 -0.02 3.71 16 31 H 0.18 2.89 8.01 -2.39 -0.02 2.88 16 32 H 0.05 2.51 8.13 -2.39 -0.02 2.49 16 33 H 0.04 1.85 8.09 -2.39 -0.02 1.83 16 34 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 36 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 37 H 0.07 3.29 8.14 -2.38 -0.02 3.27 16 38 H 0.07 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -77.55 344.99 6.90 -70.65 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.05 Total: 16.86 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.16 Total: -1.55 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -1.08 Total: -65.11 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -0.26 Total: -64.65 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -77.55 6.90 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774117974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.244 kcal (2) G-P(sol) polarization free energy of solvation -77.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds