Wall clock time and date at job start Tue Mar 31 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21252 * 119.99768 * 2 1 4 4 C 1.47175 * 120.00001 * 179.97438 * 2 1 3 5 5 C 1.40037 * 120.51519 * 5.95557 * 4 2 1 6 6 C 1.39718 * 118.12737 * 179.74962 * 5 4 2 7 7 C 1.47740 * 120.48263 * 180.23443 * 6 5 4 8 8 O 1.21465 * 119.99988 * 173.88627 * 7 6 5 9 9 O 1.34705 * 119.99735 * 353.88514 * 7 6 5 10 10 C 1.45201 * 116.99974 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.50709 * 109.47324 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99740 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00059 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99771 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00245 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46891 * 89.99656 * 16 14 12 18 18 H 1.48500 * 109.47366 * 210.00229 * 16 14 12 19 19 H 1.48507 * 109.46891 * 330.00206 * 16 14 12 20 20 C 1.39759 * 119.03755 * 0.25524 * 6 5 4 21 21 C 1.50701 * 119.53354 * 180.02562 * 20 6 5 22 22 N 1.31744 * 120.93110 * 359.97438 * 20 6 5 23 23 C 1.31715 * 122.08316 * 0.02562 * 22 20 6 24 24 C 1.50706 * 119.57745 * 180.02562 * 23 22 20 25 25 H 1.09007 * 109.47109 * 270.00740 * 1 2 3 26 26 H 1.09003 * 109.47207 * 29.99845 * 1 2 3 27 27 H 1.08998 * 109.47089 * 150.00323 * 1 2 3 28 28 H 1.07995 * 120.93360 * 0.02882 * 5 4 2 29 29 H 1.09003 * 109.47349 * 300.00445 * 10 9 7 30 30 H 1.09010 * 109.46924 * 60.00163 * 10 9 7 31 31 H 1.08993 * 109.47741 * 300.00139 * 11 10 9 32 32 H 1.09003 * 109.47079 * 60.00658 * 11 10 9 33 33 H 0.97007 * 119.99840 * 180.02562 * 15 14 12 34 34 H 1.08992 * 109.47422 * 83.11611 * 21 20 6 35 35 H 1.09005 * 109.46488 * 203.12071 * 21 20 6 36 36 H 1.08999 * 109.46644 * 323.10999 * 21 20 6 37 37 H 1.08999 * 109.47091 * 96.74675 * 24 23 22 38 38 H 1.08994 * 109.47295 * 216.75299 * 24 23 22 39 39 H 1.09004 * 109.46861 * 336.75622 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5593 -2.4904 -0.1241 6 6 2.3079 -3.6701 -0.1228 7 6 1.6405 -4.9813 -0.2565 8 8 2.3045 -5.9925 -0.3661 9 8 0.2954 -5.0555 -0.2567 10 6 -0.2919 -6.3765 -0.3924 11 6 -1.8173 -6.2611 -0.3710 12 6 -2.4269 -7.6323 -0.5112 13 1 -1.7899 -8.4993 -0.6056 14 6 -3.7977 -7.7797 -0.5189 15 7 -4.3296 -8.9764 -0.6407 16 14 -4.8995 -6.2800 -0.3563 17 1 -5.1991 -5.7374 -1.7057 18 1 -6.1666 -6.6670 0.3144 19 1 -4.2083 -5.2433 0.4518 20 6 3.6972 -3.5918 0.0070 21 6 4.5156 -4.8572 0.0091 22 7 4.3016 -2.4272 0.1266 23 6 3.6359 -1.2907 0.1305 24 6 4.3849 0.0096 0.2701 25 1 -0.3634 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.4841 -2.5151 -0.2229 29 1 0.0262 -6.8205 -1.3357 30 1 0.0361 -7.0066 0.4345 31 1 -2.1350 -5.8174 0.5725 32 1 -2.1456 -5.6310 -1.1976 33 1 -5.2941 -9.0801 -0.6465 34 1 4.7017 -5.1713 -1.0178 35 1 5.4658 -4.6744 0.5111 36 1 3.9713 -5.6409 0.5359 37 1 4.5521 0.4404 -0.7171 38 1 3.8000 0.7027 0.8747 39 1 5.3444 -0.1740 0.7536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777097217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:01 Heat of formation + Delta-G solvation = -94.499219 kcal Electronic energy + Delta-G solvation = -22515.026259 eV Core-core repulsion = 19001.939410 eV Total energy + Delta-G solvation = -3513.086849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34948 -40.01788 -38.97215 -36.47116 -33.92534 -33.72738 -33.32860 -31.00113 -30.43278 -29.28652 -27.80290 -25.36786 -23.65383 -22.99446 -21.80249 -20.74188 -20.03325 -17.99093 -17.27504 -17.00056 -16.36175 -16.19078 -15.81323 -15.64099 -15.51485 -14.70928 -14.64983 -14.28666 -13.77416 -13.68368 -13.29533 -13.18497 -12.81988 -12.68676 -12.57036 -12.40006 -12.34336 -12.20410 -12.16767 -11.62668 -11.39809 -10.81098 -10.71584 -10.50395 -10.23760 -10.04638 -9.89896 -9.82407 -9.63073 -9.42964 -9.28606 -8.69363 -6.19530 -4.21420 0.02320 0.43771 1.91772 2.53809 2.79415 3.21602 3.29592 3.31815 3.38752 3.54729 3.83581 4.22044 4.26993 4.31609 4.37707 4.73555 4.85637 5.06115 5.09526 5.13795 5.20687 5.28395 5.35276 5.40274 5.46616 5.55490 5.64491 5.71031 5.81740 5.86103 5.86311 5.97844 6.21470 6.34011 6.63007 7.05784 7.11455 7.11757 7.47159 7.54052 7.90214 8.32165 8.81919 9.39492 10.92986 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.003822 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.634337 B = 7324.274173 C = 8838.089321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.405 3.595 3 O -0.453 6.453 4 C -0.253 4.253 5 C 0.035 3.965 6 C -0.195 4.195 7 C 0.509 3.491 8 O -0.499 6.499 9 O -0.357 6.357 10 C 0.084 3.916 11 C -0.009 4.009 12 C -0.529 4.529 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.263 1.263 20 C 0.229 3.771 21 C -0.118 4.118 22 N -0.500 5.500 23 C 0.219 3.781 24 C -0.114 4.114 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.163 0.837 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.742 17.752 1.959 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.284 3.716 3 O -0.329 6.329 4 C -0.256 4.256 5 C 0.010 3.990 6 C -0.198 4.198 7 C 0.352 3.648 8 O -0.389 6.389 9 O -0.274 6.274 10 C 0.011 3.989 11 C -0.046 4.046 12 C -0.567 4.567 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.188 1.188 20 C 0.091 3.909 21 C -0.175 4.175 22 N -0.210 5.210 23 C 0.081 3.919 24 C -0.170 4.170 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.180 0.820 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.926 17.878 1.998 23.375 hybrid contribution -1.723 0.262 -0.112 1.747 sum 13.202 18.140 1.887 22.515 Atomic orbital electron populations 1.22275 0.92996 1.05467 1.05308 1.22240 0.91758 0.86795 0.70806 1.90500 1.71522 1.34174 1.36742 1.21296 0.95448 0.95994 1.12857 1.22358 1.01497 0.89875 0.85274 1.20041 0.94549 0.92502 1.12756 1.20625 0.82036 0.88300 0.73792 1.90783 1.65464 1.37171 1.45486 1.86503 1.19999 1.38419 1.82435 1.23474 0.95524 0.78003 1.01855 1.19635 0.88077 0.98983 0.97947 1.20820 0.92369 0.91571 1.51960 0.90594 1.24938 0.97933 0.96004 0.94105 1.69893 1.11877 1.21994 1.49568 0.86755 0.80144 0.83433 0.78877 1.20026 1.21126 1.18790 1.21842 0.89689 0.94431 0.84922 1.21218 0.99388 0.92270 1.04583 1.67656 1.39483 0.97215 1.16680 1.21983 0.89810 0.94656 0.85483 1.21140 1.00274 0.91460 1.04177 0.87991 0.88958 0.89155 0.81981 0.91393 0.91370 0.95342 0.95784 0.92357 0.89012 0.90564 0.87451 0.89293 0.88085 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 9.89 36.01 0.36 -1.02 16 2 C 0.41 3.85 7.16 -30.68 -0.22 3.63 16 3 O -0.45 -5.14 14.11 5.58 0.08 -5.06 16 4 C -0.25 -2.69 5.88 -104.97 -0.62 -3.30 16 5 C 0.04 0.39 9.06 -38.35 -0.35 0.04 16 6 C -0.20 -2.56 5.88 -104.89 -0.62 -3.18 16 7 C 0.51 8.00 7.83 34.61 0.27 8.27 16 8 O -0.50 -8.59 13.14 -19.24 -0.25 -8.84 16 9 O -0.36 -6.12 9.56 -40.51 -0.39 -6.51 16 10 C 0.08 1.66 5.41 37.15 0.20 1.86 16 11 C -0.01 -0.20 4.42 -27.88 -0.12 -0.33 16 12 C -0.53 -14.46 9.66 -34.44 -0.33 -14.79 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 16 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 20 C 0.23 2.91 6.83 -82.06 -0.56 2.35 16 21 C -0.12 -1.34 8.85 36.01 0.32 -1.02 16 22 N -0.50 -6.23 10.15 -5.02 -0.05 -6.28 16 23 C 0.22 2.49 6.83 -82.01 -0.56 1.93 16 24 C -0.11 -1.06 8.84 36.01 0.32 -0.74 16 25 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.54 6.33 -51.93 -0.33 0.22 16 28 H 0.16 1.50 6.02 -52.49 -0.32 1.19 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 31 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 32 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.11 1.35 5.85 -51.93 -0.30 1.05 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.95 5.87 -51.93 -0.31 0.65 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -31.11 331.41 -6.51 -37.62 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.99 Total: -1.56 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.01 Total: -4.37 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.72 Total: -32.15 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.56 Total: -20.40 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.11 -6.51 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777097217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.883 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds