Wall clock time and date at job start Tue Mar 31 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21252 * 119.99768 * 2 1 4 4 C 1.47175 * 120.00001 * 179.97438 * 2 1 3 5 5 C 1.40037 * 120.51519 * 5.95557 * 4 2 1 6 6 C 1.39718 * 118.12737 * 179.74962 * 5 4 2 7 7 C 1.47740 * 120.48263 * 180.23443 * 6 5 4 8 8 O 1.21465 * 119.99988 * 173.88627 * 7 6 5 9 9 O 1.34705 * 119.99735 * 353.88514 * 7 6 5 10 10 C 1.45201 * 116.99974 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.50709 * 109.47324 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99740 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00059 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99771 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00245 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46891 * 89.99656 * 16 14 12 18 18 H 1.48500 * 109.47366 * 210.00229 * 16 14 12 19 19 H 1.48507 * 109.46891 * 330.00206 * 16 14 12 20 20 C 1.39759 * 119.03755 * 0.25524 * 6 5 4 21 21 C 1.50701 * 119.53354 * 180.02562 * 20 6 5 22 22 N 1.31744 * 120.93110 * 359.97438 * 20 6 5 23 23 C 1.31715 * 122.08316 * 0.02562 * 22 20 6 24 24 C 1.50706 * 119.57745 * 180.02562 * 23 22 20 25 25 H 1.09007 * 109.47109 * 270.00740 * 1 2 3 26 26 H 1.09003 * 109.47207 * 29.99845 * 1 2 3 27 27 H 1.08998 * 109.47089 * 150.00323 * 1 2 3 28 28 H 1.07995 * 120.93360 * 0.02882 * 5 4 2 29 29 H 1.09003 * 109.47349 * 300.00445 * 10 9 7 30 30 H 1.09010 * 109.46924 * 60.00163 * 10 9 7 31 31 H 1.08993 * 109.47741 * 300.00139 * 11 10 9 32 32 H 1.09003 * 109.47079 * 60.00658 * 11 10 9 33 33 H 0.97007 * 119.99840 * 180.02562 * 15 14 12 34 34 H 1.08992 * 109.47422 * 83.11611 * 21 20 6 35 35 H 1.09005 * 109.46488 * 203.12071 * 21 20 6 36 36 H 1.08999 * 109.46644 * 323.10999 * 21 20 6 37 37 H 1.08999 * 109.47091 * 96.74675 * 24 23 22 38 38 H 1.08994 * 109.47295 * 216.75299 * 24 23 22 39 39 H 1.09004 * 109.46861 * 336.75622 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5593 -2.4904 -0.1241 6 6 2.3079 -3.6701 -0.1228 7 6 1.6405 -4.9813 -0.2565 8 8 2.3045 -5.9925 -0.3661 9 8 0.2954 -5.0555 -0.2567 10 6 -0.2919 -6.3765 -0.3924 11 6 -1.8173 -6.2611 -0.3710 12 6 -2.4269 -7.6323 -0.5112 13 1 -1.7899 -8.4993 -0.6056 14 6 -3.7977 -7.7797 -0.5189 15 7 -4.3296 -8.9764 -0.6407 16 14 -4.8995 -6.2800 -0.3563 17 1 -5.1991 -5.7374 -1.7057 18 1 -6.1666 -6.6670 0.3144 19 1 -4.2083 -5.2433 0.4518 20 6 3.6972 -3.5918 0.0070 21 6 4.5156 -4.8572 0.0091 22 7 4.3016 -2.4272 0.1266 23 6 3.6359 -1.2907 0.1305 24 6 4.3849 0.0096 0.2701 25 1 -0.3634 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.4841 -2.5151 -0.2229 29 1 0.0262 -6.8205 -1.3357 30 1 0.0361 -7.0066 0.4345 31 1 -2.1350 -5.8174 0.5725 32 1 -2.1456 -5.6310 -1.1976 33 1 -5.2941 -9.0801 -0.6465 34 1 4.7017 -5.1713 -1.0178 35 1 5.4658 -4.6744 0.5111 36 1 3.9713 -5.6409 0.5359 37 1 4.5521 0.4404 -0.7171 38 1 3.8000 0.7027 0.8747 39 1 5.3444 -0.1740 0.7536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777097217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:00 Heat of formation + Delta-G solvation = -112.522027 kcal Electronic energy + Delta-G solvation = -22515.807787 eV Core-core repulsion = 19001.939410 eV Total energy + Delta-G solvation = -3513.868376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.32176 -41.16699 -39.86858 -37.83430 -35.42118 -34.73730 -34.61783 -32.76651 -31.25584 -30.14249 -28.71679 -27.09839 -24.61965 -24.01072 -22.95877 -22.41213 -20.96844 -19.33022 -18.67961 -18.26367 -17.69766 -17.44252 -16.70584 -16.58362 -16.44179 -16.24305 -15.62149 -15.49607 -15.01162 -14.91388 -14.56168 -14.33458 -14.10768 -13.63845 -13.47090 -13.28252 -13.23665 -13.08682 -13.05537 -12.94345 -12.87493 -12.48447 -12.34388 -11.79119 -11.72276 -11.51447 -11.42592 -11.15856 -11.03178 -10.78850 -10.45821 -10.21399 -8.31961 -6.40457 -0.88944 -0.47214 1.06708 1.41055 1.42970 1.44232 1.50402 1.55337 2.36908 2.44750 2.74914 3.01004 3.03492 3.29217 3.39840 3.44605 3.86481 4.02500 4.18121 4.20720 4.21357 4.43793 4.46426 4.62152 4.63955 4.65133 4.65935 4.66084 4.69390 4.89425 4.96093 5.01836 5.14647 5.19823 5.32438 5.35053 5.51731 5.54810 6.17593 6.40196 6.55277 6.58925 6.66638 7.24805 8.84135 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.003822 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.634337 B = 7324.274173 C = 8838.089321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.409 3.591 3 O -0.473 6.473 4 C -0.253 4.253 5 C 0.046 3.954 6 C -0.210 4.210 7 C 0.510 3.490 8 O -0.518 6.518 9 O -0.351 6.351 10 C 0.095 3.905 11 C -0.003 4.003 12 C -0.542 4.542 13 H 0.034 0.966 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.954 3.046 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.237 1.237 20 C 0.223 3.777 21 C -0.114 4.114 22 N -0.510 5.510 23 C 0.211 3.789 24 C -0.109 4.109 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.183 0.817 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.270 0.730 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.305 20.808 2.230 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.289 3.711 3 O -0.351 6.351 4 C -0.256 4.256 5 C 0.022 3.978 6 C -0.214 4.214 7 C 0.356 3.644 8 O -0.409 6.409 9 O -0.268 6.268 10 C 0.022 3.978 11 C -0.041 4.041 12 C -0.580 4.580 13 H 0.053 0.947 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.776 3.224 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.160 1.160 20 C 0.085 3.915 21 C -0.171 4.171 22 N -0.221 5.221 23 C 0.073 3.927 24 C -0.166 4.166 25 H 0.136 0.864 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.201 0.799 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.519 20.949 2.270 25.590 hybrid contribution -1.461 -0.703 -0.198 1.633 sum 13.058 20.246 2.073 24.181 Atomic orbital electron populations 1.22327 0.90446 1.06442 1.06555 1.22549 0.92948 0.85770 0.69837 1.90503 1.72204 1.34591 1.37797 1.21492 0.95276 0.96585 1.12219 1.22560 1.02374 0.89096 0.83820 1.19898 0.94762 0.91691 1.15001 1.21037 0.81256 0.89178 0.72971 1.90787 1.65554 1.38178 1.46419 1.86464 1.21010 1.36404 1.82874 1.23028 0.94256 0.79225 1.01281 1.19472 0.89588 0.96255 0.98775 1.21133 0.92495 0.92779 1.51605 0.94737 1.25988 0.99746 0.99560 0.93539 1.70054 1.12472 1.24891 1.51239 0.85605 0.77632 0.79419 0.79719 1.18781 1.21089 1.16026 1.21985 0.89739 0.94921 0.84807 1.21167 0.99751 0.91509 1.04653 1.67702 1.39699 0.97379 1.17329 1.22424 0.90606 0.94986 0.84649 1.21157 1.00433 0.90417 1.04579 0.86437 0.88129 0.88049 0.79946 0.92095 0.92116 0.94302 0.94359 0.92148 0.88832 0.89106 0.88834 0.88664 0.88044 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 9.89 71.24 0.70 -1.30 16 2 C 0.41 6.67 7.16 28.04 0.20 6.87 16 3 O -0.47 -9.69 14.11 -2.94 -0.04 -9.73 16 4 C -0.25 -4.78 5.88 -20.09 -0.12 -4.90 16 5 C 0.05 0.90 9.06 23.06 0.21 1.11 16 6 C -0.21 -5.22 5.88 -20.04 -0.12 -5.34 16 7 C 0.51 15.59 7.83 70.33 0.55 16.14 16 8 O -0.52 -17.85 13.14 19.95 0.26 -17.59 16 9 O -0.35 -11.45 9.56 -56.15 -0.54 -11.98 16 10 C 0.10 3.72 5.41 71.98 0.39 4.11 16 11 C 0.00 -0.15 4.42 29.85 0.13 -0.02 16 12 C -0.54 -30.02 9.66 25.60 0.25 -29.77 16 13 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 14 C 0.01 0.53 5.47 84.65 0.46 0.99 16 15 N -0.95 -57.57 13.96 21.45 0.30 -57.27 16 16 Si 0.95 41.15 27.47 68.60 1.88 43.03 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 18 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 20 C 0.22 5.45 6.83 42.94 0.29 5.74 16 21 C -0.11 -2.55 8.85 71.24 0.63 -1.92 16 22 N -0.51 -12.03 10.15 -169.80 -1.72 -13.75 16 23 C 0.21 4.43 6.83 42.98 0.29 4.72 16 24 C -0.11 -1.84 8.84 71.24 0.63 -1.21 16 25 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.80 6.33 -2.39 -0.02 0.79 16 28 H 0.18 2.74 6.02 -2.91 -0.02 2.72 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.04 1.63 7.20 -2.39 -0.02 1.61 16 32 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 33 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.09 2.37 5.85 -2.39 -0.01 2.35 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.74 5.87 -2.39 -0.01 1.72 16 39 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -67.60 331.41 5.67 -61.93 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.02 Total: 10.12 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 4.51 Total: -4.76 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -1.42 Total: -71.02 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.32 Total: -39.30 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.03 kcal Total: -67.60 5.67 -61.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777097217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.597 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds