Wall clock time and date at job start Tue Mar 31 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35414 * 117.00685 * 2 1 4 4 N 1.32239 * 119.80097 * 0.02562 * 3 2 1 5 5 C 1.31876 * 121.80911 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.40492 * 179.97438 * 5 4 3 7 7 C 1.38379 * 121.19599 * 0.27604 * 5 4 3 8 8 C 1.38317 * 119.46142 * 359.42890 * 7 5 4 9 9 C 1.40047 * 118.34687 * 0.55326 * 8 7 5 10 10 C 1.47392 * 120.60552 * 179.71178 * 9 8 7 11 11 O 1.21505 * 120.00030 * 175.49838 * 10 9 8 12 12 O 1.34749 * 119.99749 * 355.50105 * 10 9 8 13 13 C 1.45200 * 116.99880 * 184.62415 * 12 10 9 14 14 C 1.52999 * 109.46843 * 184.03547 * 13 12 10 15 15 C 1.50698 * 115.55599 * 306.57848 * 14 13 12 16 16 H 1.07995 * 120.00691 * 144.82959 * 15 14 13 17 17 C 1.37888 * 119.99643 * 324.83384 * 15 14 13 18 18 N 1.31508 * 120.00038 * 348.21193 * 17 15 14 19 19 Si 1.86801 * 119.99896 * 168.20883 * 17 15 14 20 20 H 1.48503 * 109.47128 * 60.00057 * 19 17 15 21 21 H 1.48492 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47123 * 300.00230 * 19 17 15 23 23 C 1.53004 * 117.49631 * 160.91021 * 14 13 12 24 24 C 1.53009 * 117.50018 * 92.25362 * 14 13 12 25 25 H 1.08995 * 109.47587 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47171 * 300.00477 * 1 2 3 27 27 H 1.08999 * 109.46855 * 59.99991 * 1 2 3 28 28 H 1.08998 * 109.47156 * 89.99806 * 6 5 4 29 29 H 1.09003 * 109.47068 * 330.00243 * 6 5 4 30 30 H 1.09002 * 109.47547 * 210.00237 * 6 5 4 31 31 H 1.07992 * 120.26795 * 179.72331 * 7 5 4 32 32 H 1.07999 * 120.82772 * 180.26760 * 8 7 5 33 33 H 1.08997 * 109.47424 * 304.03389 * 13 12 10 34 34 H 1.08999 * 109.46752 * 64.04067 * 13 12 10 35 35 H 0.97001 * 120.00544 * 185.03460 * 18 17 15 36 36 H 1.08998 * 117.50138 * 359.97438 * 23 14 13 37 37 H 1.09005 * 117.49742 * 145.02175 * 23 14 13 38 38 H 1.08997 * 117.49603 * 214.97870 * 24 14 13 39 39 H 1.08998 * 117.49228 * 359.97010 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2065 0.0000 4 7 1.3200 2.3131 0.0005 5 6 1.8773 3.5083 0.0010 6 6 1.0001 4.7337 0.0010 7 6 3.2529 3.6577 -0.0046 8 6 4.0593 2.5339 0.0010 9 6 3.4456 1.2751 0.0005 10 6 4.2570 0.0446 0.0000 11 8 3.7157 -1.0401 0.0822 12 8 5.5991 0.1227 -0.0915 13 6 6.3270 -1.1297 -0.1902 14 6 7.8307 -0.8474 -0.1835 15 6 8.3102 0.1465 -1.2097 16 1 9.1218 0.8184 -0.9729 17 6 7.7125 0.1980 -2.4513 18 7 6.8917 -0.7586 -2.8261 19 14 8.0688 1.6268 -3.6007 20 1 9.5226 1.6705 -3.9003 21 1 7.3088 1.4473 -4.8637 22 1 7.6587 2.8981 -2.9520 23 6 8.7655 -2.0066 0.1679 24 6 8.5476 -0.8686 1.1682 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7882 5.0288 1.0287 29 1 0.0651 4.5112 -0.5132 30 1 1.5124 5.5473 -0.5124 31 1 3.6934 4.6437 -0.0086 32 1 5.1355 2.6249 0.0011 33 1 6.0730 -1.7655 0.6579 34 1 6.0564 -1.6351 -1.1172 35 1 6.5283 -0.7613 -3.7255 36 1 8.3093 -2.9702 0.3946 37 1 9.7274 -2.0501 -0.3431 38 1 9.3660 -0.1639 1.3148 39 1 7.9477 -1.0832 2.0526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777324774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:20 Heat of formation + Delta-G solvation = -57.663829 kcal Electronic energy + Delta-G solvation = -23420.910316 eV Core-core repulsion = 19909.420769 eV Total energy + Delta-G solvation = -3511.489546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78987 -39.03930 -37.98094 -36.65307 -34.88243 -33.11202 -32.15338 -31.76137 -28.57787 -27.29611 -26.21377 -25.28871 -23.19139 -22.73790 -21.25131 -20.56082 -19.15786 -18.15118 -17.05862 -16.93697 -16.28445 -16.09297 -15.42999 -15.17468 -14.56425 -14.46533 -14.18816 -14.14873 -13.84454 -13.34710 -13.01780 -12.69959 -12.56281 -12.30465 -11.92391 -11.90754 -11.69123 -11.45141 -11.03122 -10.95333 -10.84531 -10.50373 -10.33182 -10.00537 -9.80208 -9.77065 -9.43259 -9.33275 -9.09317 -8.75005 -8.41436 -8.10864 -6.04456 -4.08189 0.73809 1.32874 3.07853 3.11246 3.27464 3.33981 3.35493 3.50056 3.95404 4.11902 4.36108 4.70790 4.93545 4.96219 5.14926 5.23893 5.29936 5.32496 5.38200 5.46554 5.48244 5.62644 5.63001 5.84706 5.98819 6.07345 6.13947 6.23992 6.44979 6.49827 6.65104 6.66307 6.83068 6.99182 7.26388 7.27964 7.42383 7.56694 7.77364 7.89981 8.35016 8.70072 8.87435 9.51271 10.97518 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.005389 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.066412 B = 5194.131005 C = 6002.163990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.271 6.271 3 C 0.375 3.625 4 N -0.550 5.550 5 C 0.188 3.812 6 C -0.106 4.106 7 C -0.226 4.226 8 C 0.020 3.980 9 C -0.192 4.192 10 C 0.504 3.496 11 O -0.505 6.505 12 O -0.323 6.323 13 C 0.118 3.882 14 C 0.049 3.951 15 C -0.484 4.484 16 H 0.062 0.938 17 C 0.076 3.924 18 N -0.881 5.881 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.193 4.193 24 C -0.210 4.210 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.028 0.972 34 H 0.111 0.889 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 8.607 5.247 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.175 6.175 3 C 0.196 3.804 4 N -0.276 5.276 5 C 0.051 3.949 6 C -0.163 4.163 7 C -0.246 4.246 8 C -0.005 4.005 9 C -0.196 4.196 10 C 0.347 3.653 11 O -0.396 6.396 12 O -0.237 6.237 13 C 0.045 3.955 14 C 0.048 3.952 15 C -0.521 4.521 16 H 0.080 0.920 17 C -0.127 4.127 18 N -0.518 5.518 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.231 4.231 24 C -0.247 4.247 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.046 0.954 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.183 7.859 5.128 15.378 hybrid contribution 0.887 0.646 -0.651 1.276 sum -11.296 8.505 4.478 14.832 Atomic orbital electron populations 1.22918 0.77814 1.03117 1.02087 1.86553 1.22143 1.23033 1.85763 1.19765 0.87868 0.84960 0.87845 1.67254 1.40011 0.98105 1.22257 1.21156 0.92245 0.91878 0.89663 1.20791 0.99274 0.92868 1.03360 1.21786 0.93644 1.00146 1.09057 1.21973 1.02043 0.89755 0.86688 1.19348 0.90295 0.94088 1.15848 1.20458 0.82691 0.87991 0.74136 1.90798 1.73446 1.29375 1.45968 1.86515 1.16801 1.38718 1.81699 1.22795 0.90110 0.81057 1.01510 1.18882 0.87675 0.96315 0.92307 1.20360 1.17615 1.17295 0.96873 0.92002 1.24926 0.94212 0.95653 0.97910 1.69786 1.31867 1.31511 1.18607 0.86637 0.78289 0.83200 0.79808 1.20245 1.21293 1.19896 1.22966 1.02679 0.92822 1.04590 1.22966 1.04644 1.02918 0.94170 0.88487 0.92398 0.92378 0.89936 0.90344 0.90128 0.83887 0.82053 0.95359 0.87104 0.92624 0.91474 0.89791 0.90331 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.50 16 2 O -0.27 -4.90 8.59 -39.66 -0.34 -5.24 16 3 C 0.38 6.72 7.51 -16.59 -0.12 6.59 16 4 N -0.55 -8.37 9.11 -9.19 -0.08 -8.45 16 5 C 0.19 2.38 6.78 -82.52 -0.56 1.82 16 6 C -0.11 -0.87 10.16 36.00 0.37 -0.50 16 7 C -0.23 -2.89 9.71 -39.50 -0.38 -3.27 16 8 C 0.02 0.33 9.73 -38.87 -0.38 -0.05 16 9 C -0.19 -3.68 5.90 -104.71 -0.62 -4.30 16 10 C 0.50 11.53 7.88 34.46 0.27 11.80 16 11 O -0.51 -12.52 14.92 -26.55 -0.40 -12.91 16 12 O -0.32 -7.84 9.18 -40.62 -0.37 -8.21 16 13 C 0.12 2.98 4.62 37.16 0.17 3.15 16 14 C 0.05 1.22 2.12 -155.66 -0.33 0.89 16 15 C -0.48 -12.99 8.76 -34.44 -0.30 -13.29 16 16 H 0.06 1.64 7.84 -52.49 -0.41 1.23 16 17 C 0.08 2.05 5.16 -17.82 -0.09 1.96 16 18 N -0.88 -24.59 10.82 55.43 0.60 -23.99 16 19 Si 0.89 20.76 29.56 -169.99 -5.02 15.73 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.19 -4.33 9.96 -26.69 -0.27 -4.60 16 24 C -0.21 -4.56 9.92 -26.69 -0.26 -4.82 16 25 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.16 2.57 7.71 -52.49 -0.40 2.16 16 33 H 0.03 0.68 7.94 -51.93 -0.41 0.27 16 34 H 0.11 3.08 6.07 -51.93 -0.32 2.76 16 35 H 0.26 7.12 8.32 -40.82 -0.34 6.79 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -31.53 339.30 -7.29 -38.82 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.32 Total: 2.25 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.46 Total: -3.11 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.52 Total: -32.45 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.11 Total: -26.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.53 -7.29 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777324774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.847 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds