Wall clock time and date at job start Tue Mar 31 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35414 * 117.00685 * 2 1 4 4 N 1.32239 * 119.80097 * 0.02562 * 3 2 1 5 5 C 1.31876 * 121.80911 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.40492 * 179.97438 * 5 4 3 7 7 C 1.38379 * 121.19599 * 0.27604 * 5 4 3 8 8 C 1.38317 * 119.46142 * 359.42890 * 7 5 4 9 9 C 1.40047 * 118.34687 * 0.55326 * 8 7 5 10 10 C 1.47392 * 120.60552 * 179.71178 * 9 8 7 11 11 O 1.21505 * 120.00030 * 175.49838 * 10 9 8 12 12 O 1.34749 * 119.99749 * 355.50105 * 10 9 8 13 13 C 1.45200 * 116.99880 * 184.62415 * 12 10 9 14 14 C 1.52999 * 109.46843 * 184.03547 * 13 12 10 15 15 C 1.50698 * 115.55599 * 306.57848 * 14 13 12 16 16 H 1.07995 * 120.00691 * 144.82959 * 15 14 13 17 17 C 1.37888 * 119.99643 * 324.83384 * 15 14 13 18 18 N 1.31508 * 120.00038 * 348.21193 * 17 15 14 19 19 Si 1.86801 * 119.99896 * 168.20883 * 17 15 14 20 20 H 1.48503 * 109.47128 * 60.00057 * 19 17 15 21 21 H 1.48492 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47123 * 300.00230 * 19 17 15 23 23 C 1.53004 * 117.49631 * 160.91021 * 14 13 12 24 24 C 1.53009 * 117.50018 * 92.25362 * 14 13 12 25 25 H 1.08995 * 109.47587 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47171 * 300.00477 * 1 2 3 27 27 H 1.08999 * 109.46855 * 59.99991 * 1 2 3 28 28 H 1.08998 * 109.47156 * 89.99806 * 6 5 4 29 29 H 1.09003 * 109.47068 * 330.00243 * 6 5 4 30 30 H 1.09002 * 109.47547 * 210.00237 * 6 5 4 31 31 H 1.07992 * 120.26795 * 179.72331 * 7 5 4 32 32 H 1.07999 * 120.82772 * 180.26760 * 8 7 5 33 33 H 1.08997 * 109.47424 * 304.03389 * 13 12 10 34 34 H 1.08999 * 109.46752 * 64.04067 * 13 12 10 35 35 H 0.97001 * 120.00544 * 185.03460 * 18 17 15 36 36 H 1.08998 * 117.50138 * 359.97438 * 23 14 13 37 37 H 1.09005 * 117.49742 * 145.02175 * 23 14 13 38 38 H 1.08997 * 117.49603 * 214.97870 * 24 14 13 39 39 H 1.08998 * 117.49228 * 359.97010 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2065 0.0000 4 7 1.3200 2.3131 0.0005 5 6 1.8773 3.5083 0.0010 6 6 1.0001 4.7337 0.0010 7 6 3.2529 3.6577 -0.0046 8 6 4.0593 2.5339 0.0010 9 6 3.4456 1.2751 0.0005 10 6 4.2570 0.0446 0.0000 11 8 3.7157 -1.0401 0.0822 12 8 5.5991 0.1227 -0.0915 13 6 6.3270 -1.1297 -0.1902 14 6 7.8307 -0.8474 -0.1835 15 6 8.3102 0.1465 -1.2097 16 1 9.1218 0.8184 -0.9729 17 6 7.7125 0.1980 -2.4513 18 7 6.8917 -0.7586 -2.8261 19 14 8.0688 1.6268 -3.6007 20 1 9.5226 1.6705 -3.9003 21 1 7.3088 1.4473 -4.8637 22 1 7.6587 2.8981 -2.9520 23 6 8.7655 -2.0066 0.1679 24 6 8.5476 -0.8686 1.1682 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7882 5.0288 1.0287 29 1 0.0651 4.5112 -0.5132 30 1 1.5124 5.5473 -0.5124 31 1 3.6934 4.6437 -0.0086 32 1 5.1355 2.6249 0.0011 33 1 6.0730 -1.7655 0.6579 34 1 6.0564 -1.6351 -1.1172 35 1 6.5283 -0.7613 -3.7255 36 1 8.3093 -2.9702 0.3946 37 1 9.7274 -2.0501 -0.3431 38 1 9.3660 -0.1639 1.3148 39 1 7.9477 -1.0832 2.0526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777324774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:19 Heat of formation + Delta-G solvation = -76.473658 kcal Electronic energy + Delta-G solvation = -23421.725971 eV Core-core repulsion = 19909.420769 eV Total energy + Delta-G solvation = -3512.305202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06949 -40.75434 -39.17052 -38.50330 -36.72605 -34.30428 -34.17410 -32.83398 -29.64430 -28.72891 -27.78959 -27.20433 -24.46598 -23.88464 -23.01719 -22.10920 -21.10625 -19.38594 -18.65577 -18.60154 -17.83787 -17.45809 -17.03070 -16.94599 -16.43073 -15.73268 -15.45405 -15.27634 -15.09357 -14.93600 -14.56364 -13.95775 -13.76722 -13.58201 -13.38219 -13.28534 -13.02627 -12.81359 -12.77872 -12.71360 -12.33349 -12.13461 -12.08080 -11.71736 -11.38521 -11.34688 -11.06430 -11.02815 -10.84954 -10.64612 -10.06412 -9.60016 -8.06384 -6.16470 -0.52276 0.14968 1.43005 1.45366 1.52695 1.53443 1.83656 1.98573 2.43129 2.63405 3.00914 3.08219 3.56582 3.69812 3.73591 3.85599 4.17119 4.22640 4.28248 4.35592 4.36459 4.39174 4.58654 4.66200 4.71202 4.77272 4.82518 4.89392 4.91649 4.97044 5.01937 5.15245 5.18426 5.39006 5.44539 5.51548 5.73552 5.82172 6.11718 6.34085 6.61440 6.78657 6.94891 7.45461 8.93852 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.005389 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.066412 B = 5194.131005 C = 6002.163990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.367 3.633 4 N -0.551 5.551 5 C 0.195 3.805 6 C -0.103 4.103 7 C -0.212 4.212 8 C 0.014 3.986 9 C -0.233 4.233 10 C 0.499 3.501 11 O -0.538 6.538 12 O -0.331 6.331 13 C 0.128 3.872 14 C 0.010 3.990 15 C -0.497 4.497 16 H 0.060 0.940 17 C 0.031 3.969 18 N -0.909 5.909 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.262 1.262 23 C -0.187 4.187 24 C -0.185 4.185 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.186 0.814 32 H 0.157 0.843 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 11.688 5.767 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.209 6.209 3 C 0.187 3.813 4 N -0.278 5.278 5 C 0.058 3.942 6 C -0.159 4.159 7 C -0.232 4.232 8 C -0.011 4.011 9 C -0.237 4.237 10 C 0.344 3.656 11 O -0.431 6.431 12 O -0.246 6.246 13 C 0.054 3.946 14 C 0.009 3.991 15 C -0.534 4.534 16 H 0.079 0.921 17 C -0.169 4.169 18 N -0.547 5.547 19 Si 0.774 3.226 20 H -0.194 1.194 21 H -0.217 1.217 22 H -0.186 1.186 23 C -0.225 4.225 24 C -0.222 4.222 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.204 0.796 32 H 0.175 0.825 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.812 10.952 5.665 17.782 hybrid contribution 0.989 -0.239 -0.763 1.272 sum -11.823 10.712 4.903 16.691 Atomic orbital electron populations 1.23184 0.75445 1.04691 1.02939 1.86501 1.24742 1.23916 1.85746 1.19856 0.87590 0.85753 0.88063 1.67424 1.39524 0.98247 1.22573 1.22108 0.93229 0.92446 0.86460 1.20985 0.98754 0.91078 1.05131 1.22225 0.93418 1.00711 1.06800 1.22058 1.02276 0.89775 0.86969 1.19312 0.90744 0.93502 1.20173 1.21203 0.82202 0.89235 0.72914 1.90751 1.73642 1.30921 1.47780 1.86514 1.17872 1.38158 1.82061 1.22510 0.90732 0.81512 0.99816 1.19019 0.87712 0.97945 0.94403 1.20607 1.17636 1.17671 0.97496 0.92133 1.25631 0.94165 0.97667 0.99433 1.69958 1.33039 1.33177 1.18570 0.85741 0.78328 0.80726 0.77760 1.19424 1.21683 1.18614 1.22974 1.01890 0.93114 1.04489 1.22981 1.03937 1.02044 0.93238 0.86690 0.91225 0.91685 0.87761 0.89967 0.87276 0.79634 0.82547 0.95174 0.90373 0.93184 0.90369 0.89762 0.89254 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.38 113.37 1.18 1.97 16 2 O -0.30 -11.32 8.59 -66.31 -0.57 -11.89 16 3 C 0.37 13.25 7.51 85.14 0.64 13.89 16 4 N -0.55 -15.89 9.11 -296.02 -2.70 -18.59 16 5 C 0.19 4.32 6.78 42.58 0.29 4.61 16 6 C -0.10 -1.19 10.16 71.23 0.72 -0.46 16 7 C -0.21 -4.74 9.71 22.32 0.22 -4.53 16 8 C 0.01 0.45 9.73 22.73 0.22 0.67 16 9 C -0.23 -9.18 5.90 -19.92 -0.12 -9.30 16 10 C 0.50 23.99 7.88 70.23 0.55 24.55 16 11 O -0.54 -28.28 14.92 26.78 0.40 -27.88 16 12 O -0.33 -16.76 9.18 -56.59 -0.52 -17.28 16 13 C 0.13 6.69 4.62 71.98 0.33 7.02 16 14 C 0.01 0.49 2.12 -52.92 -0.11 0.38 16 15 C -0.50 -26.86 8.76 25.60 0.22 -26.64 16 16 H 0.06 3.20 7.84 -2.91 -0.02 3.17 16 17 C 0.03 1.69 5.16 84.66 0.44 2.13 16 18 N -0.91 -52.48 10.82 21.45 0.23 -52.25 16 19 Si 0.95 42.63 29.56 68.60 2.03 44.66 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.19 -8.34 9.96 30.62 0.30 -8.03 16 24 C -0.18 -7.83 9.92 30.62 0.30 -7.53 16 25 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 27 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 0.73 8.07 -2.39 -0.02 0.71 16 31 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.16 4.97 7.71 -2.91 -0.02 4.95 16 33 H 0.03 1.51 7.94 -2.39 -0.02 1.49 16 34 H 0.08 4.60 6.07 -2.39 -0.01 4.58 16 35 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.08 3.71 8.14 -2.38 -0.02 3.69 16 38 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -71.36 339.30 5.12 -66.25 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.05 Total: 18.26 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.19 Total: -1.28 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -2.47 Total: -70.84 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -0.69 Total: -57.05 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.36 5.12 -66.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777324774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.228 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds