Wall clock time and date at job start Tue Mar 31 2020 07:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46885 * 2 1 4 4 C 1.50702 * 109.47062 * 120.00276 * 2 1 3 5 5 O 1.20821 * 120.00058 * 240.00366 * 4 2 1 6 6 O 1.34230 * 119.99797 * 59.99769 * 4 2 1 7 7 C 1.45200 * 116.99913 * 185.08035 * 6 4 2 8 8 C 1.50697 * 109.47519 * 184.91852 * 7 6 4 9 9 O 1.21286 * 119.99884 * 354.99917 * 8 7 6 10 10 N 1.34769 * 120.00179 * 175.00612 * 8 7 6 11 11 C 1.37143 * 120.00411 * 3.37430 * 10 8 7 12 12 H 1.07996 * 119.99732 * 305.55251 * 11 10 8 13 13 C 1.38887 * 120.00127 * 125.54702 * 11 10 8 14 14 N 1.31418 * 120.00130 * 181.40596 * 13 11 10 15 15 Si 1.86800 * 120.00009 * 1.41007 * 13 11 10 16 16 H 1.48502 * 109.46938 * 95.25243 * 15 13 11 17 17 H 1.48494 * 109.47085 * 215.25198 * 15 13 11 18 18 H 1.48496 * 109.47294 * 335.25395 * 15 13 11 19 19 C 1.39793 * 120.00019 * 183.37194 * 10 8 7 20 20 C 1.38958 * 120.08041 * 171.67669 * 19 10 8 21 21 C 1.38078 * 119.92493 * 179.97438 * 20 19 10 22 22 C 1.38305 * 120.07881 * 359.97438 * 21 20 19 23 23 C 1.38314 * 120.15246 * 0.02562 * 22 21 20 24 24 C 1.38079 * 120.08015 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47607 * 299.99797 * 1 2 3 27 27 H 1.09006 * 109.46868 * 60.00017 * 1 2 3 28 28 H 1.08996 * 109.46907 * 239.99954 * 2 1 3 29 29 H 1.09002 * 109.47251 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47756 * 299.99727 * 3 2 1 31 31 H 1.09006 * 109.46862 * 60.00371 * 3 2 1 32 32 H 1.09000 * 109.47100 * 64.91688 * 7 6 4 33 33 H 1.08995 * 109.47464 * 304.92083 * 7 6 4 34 34 H 0.96997 * 120.00433 * 179.97438 * 14 13 11 35 35 H 1.08003 * 120.03997 * 359.70158 * 20 19 10 36 36 H 1.08001 * 119.96362 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.92358 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.95749 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.04161 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7269 -0.1233 2.0258 6 8 1.7080 -1.9956 1.4428 7 6 2.1309 -2.5828 2.7016 8 6 1.7881 -4.0503 2.7117 9 8 1.1609 -4.5328 1.7926 10 7 2.1782 -4.8263 3.7421 11 6 2.8265 -4.2682 4.8140 12 1 3.7174 -3.6778 4.6585 13 6 2.3374 -4.4620 6.0994 14 7 2.9428 -3.9044 7.1239 15 14 0.8191 -5.5155 6.3719 16 1 1.2323 -6.9019 6.7074 17 1 0.0204 -4.9528 7.4902 18 1 -0.0023 -5.5295 5.1349 19 6 1.9219 -6.2004 3.7185 20 6 2.4708 -7.0281 4.6903 21 6 2.2151 -8.3847 4.6642 22 6 1.4133 -8.9200 3.6725 23 6 0.8652 -8.0991 2.7036 24 6 1.1175 -6.7417 2.7230 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6194 -2.0845 3.5250 33 1 3.2080 -2.4606 2.8159 34 1 2.6011 -4.0395 8.0215 35 1 3.1003 -6.6114 5.4627 36 1 2.6418 -9.0287 5.4190 37 1 1.2153 -9.9815 3.6542 38 1 0.2392 -8.5204 1.9309 39 1 0.6896 -6.1014 1.9658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797581788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:28 Heat of formation + Delta-G solvation = -75.418571 kcal Electronic energy + Delta-G solvation = -23414.148218 eV Core-core repulsion = 19901.888768 eV Total energy + Delta-G solvation = -3512.259450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53155 -39.94868 -37.68989 -36.23792 -35.22117 -34.65248 -32.31767 -30.21696 -29.98353 -27.75655 -27.17278 -25.35721 -23.94825 -22.07673 -21.44939 -19.98258 -19.58806 -18.29244 -17.56937 -16.55614 -16.30927 -16.04694 -15.82496 -15.44549 -14.82277 -14.29582 -14.10618 -13.84881 -13.40054 -13.22796 -13.02306 -12.86312 -12.71899 -12.55545 -12.35906 -12.15116 -12.05029 -11.82961 -11.42464 -11.28347 -11.18732 -11.06862 -10.72469 -10.39111 -10.34530 -10.17057 -10.14682 -9.49027 -9.08611 -8.52332 -8.10051 -7.17399 -6.64038 -4.63114 1.94911 2.09418 2.38660 2.70132 3.09227 3.19118 3.28411 3.36855 3.99605 4.07335 4.51563 4.66849 4.75547 4.80303 4.90967 5.27595 5.31250 5.46234 5.55801 5.63226 5.66021 5.66628 5.72844 5.76659 5.82515 5.88432 6.06008 6.11863 6.22126 6.32008 6.46433 6.69426 6.73533 7.09522 7.16527 7.22663 7.28245 7.63422 7.86333 7.94893 8.08045 8.64430 8.93332 9.20070 10.37701 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.004972 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.178663 B = 5630.463778 C = 6558.031867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.137 4.137 4 C 0.460 3.540 5 O -0.507 6.507 6 O -0.338 6.338 7 C 0.071 3.929 8 C 0.502 3.498 9 O -0.541 6.541 10 N -0.403 5.403 11 C -0.380 4.380 12 H 0.112 0.888 13 C 0.085 3.915 14 N -0.851 5.851 15 Si 0.873 3.127 16 H -0.252 1.252 17 H -0.289 1.289 18 H -0.257 1.257 19 C 0.159 3.841 20 C -0.159 4.159 21 C -0.105 4.105 22 C -0.169 4.169 23 C -0.108 4.108 24 C -0.183 4.183 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.281 0.719 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 2.455 -9.514 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.195 4.195 4 C 0.302 3.698 5 O -0.395 6.395 6 O -0.254 6.254 7 C -0.005 4.005 8 C 0.293 3.707 9 O -0.423 6.423 10 N -0.113 5.113 11 C -0.506 4.506 12 H 0.129 0.871 13 C -0.126 4.126 14 N -0.484 5.484 15 Si 0.699 3.301 16 H -0.177 1.177 17 H -0.216 1.216 18 H -0.181 1.181 19 C 0.064 3.936 20 C -0.179 4.179 21 C -0.123 4.123 22 C -0.189 4.189 23 C -0.127 4.127 24 C -0.203 4.203 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.751 2.510 -9.480 10.500 hybrid contribution -0.379 -0.594 0.814 1.076 sum -4.130 1.916 -8.667 9.790 Atomic orbital electron populations 1.21799 0.92033 1.03800 1.02724 1.21016 0.98316 0.96560 0.94522 1.21718 1.02022 0.93157 1.02572 1.23784 0.77645 0.80396 0.87943 1.90676 1.35312 1.66730 1.46753 1.86462 1.72581 1.26430 1.39879 1.22564 1.02576 0.91853 0.83557 1.20239 0.79965 0.87491 0.83011 1.90255 1.40743 1.73359 1.37908 1.41252 1.49162 1.02781 1.18141 1.19088 1.12053 1.35668 0.83837 0.87083 1.25489 0.96819 0.94971 0.95335 1.69645 1.39284 1.39753 0.99681 0.86955 0.82689 0.81267 0.79191 1.17697 1.21594 1.18085 1.18444 0.95734 0.84362 0.95109 1.21030 1.02878 0.93236 1.00765 1.20827 0.98750 0.94453 0.98311 1.20938 1.01772 0.99008 0.97158 1.21027 0.99629 0.93765 0.98283 1.22766 1.00133 0.96229 1.01146 0.90772 0.92082 0.91194 0.87423 0.91721 0.91383 0.91666 0.87609 0.88105 0.90839 0.84277 0.86751 0.87248 0.86833 0.80475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.12 37.16 0.34 -1.11 16 2 C -0.08 -0.96 3.36 -91.77 -0.31 -1.27 16 3 C -0.14 -1.36 8.48 37.15 0.32 -1.04 16 4 C 0.46 7.42 7.25 36.01 0.26 7.68 16 5 O -0.51 -9.47 15.64 -18.75 -0.29 -9.76 16 6 O -0.34 -6.21 9.66 -45.89 -0.44 -6.65 16 7 C 0.07 1.42 4.87 36.00 0.18 1.60 16 8 C 0.50 11.42 7.65 -10.99 -0.08 11.34 16 9 O -0.54 -12.70 12.92 -14.05 -0.18 -12.88 16 10 N -0.40 -9.66 2.30 -58.98 -0.14 -9.80 16 11 C -0.38 -9.58 8.01 -14.94 -0.12 -9.70 16 12 H 0.11 2.91 7.70 -52.49 -0.40 2.51 16 13 C 0.08 2.18 4.61 -17.49 -0.08 2.09 16 14 N -0.85 -22.64 13.96 55.49 0.77 -21.86 16 15 Si 0.87 20.64 23.85 -169.99 -4.05 16.59 16 16 H -0.25 -5.71 6.14 56.52 0.35 -5.37 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.26 -6.39 6.48 56.52 0.37 -6.02 16 19 C 0.16 3.72 4.12 -83.69 -0.35 3.37 16 20 C -0.16 -3.51 5.57 -39.37 -0.22 -3.73 16 21 C -0.10 -2.00 9.76 -39.62 -0.39 -2.39 16 22 C -0.17 -3.00 10.04 -39.53 -0.40 -3.40 16 23 C -0.11 -2.02 10.04 -39.61 -0.40 -2.42 16 24 C -0.18 -4.00 9.03 -39.37 -0.36 -4.35 16 25 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 33 H 0.10 2.01 7.57 -51.93 -0.39 1.61 16 34 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.14 3.23 5.70 -52.48 -0.30 2.93 16 36 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.18 4.01 4.58 -56.00 -0.26 3.76 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -29.31 323.04 -6.29 -35.60 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.22 Total: 7.23 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.60 Total: -3.34 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.64 Total: -31.66 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.92 Total: -29.29 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.05 Total: 16.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.31 -6.29 -35.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797581788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.814 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds