Wall clock time and date at job start Tue Mar 31 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46885 * 2 1 4 4 C 1.50702 * 109.47062 * 120.00276 * 2 1 3 5 5 O 1.20821 * 120.00058 * 240.00366 * 4 2 1 6 6 O 1.34230 * 119.99797 * 59.99769 * 4 2 1 7 7 C 1.45200 * 116.99913 * 185.08035 * 6 4 2 8 8 C 1.50697 * 109.47519 * 184.91852 * 7 6 4 9 9 O 1.21286 * 119.99884 * 354.99917 * 8 7 6 10 10 N 1.34769 * 120.00179 * 175.00612 * 8 7 6 11 11 C 1.37143 * 120.00411 * 3.37430 * 10 8 7 12 12 H 1.07996 * 119.99732 * 305.55251 * 11 10 8 13 13 C 1.38887 * 120.00127 * 125.54702 * 11 10 8 14 14 N 1.31418 * 120.00130 * 181.40596 * 13 11 10 15 15 Si 1.86800 * 120.00009 * 1.41007 * 13 11 10 16 16 H 1.48502 * 109.46938 * 95.25243 * 15 13 11 17 17 H 1.48494 * 109.47085 * 215.25198 * 15 13 11 18 18 H 1.48496 * 109.47294 * 335.25395 * 15 13 11 19 19 C 1.39793 * 120.00019 * 183.37194 * 10 8 7 20 20 C 1.38958 * 120.08041 * 171.67669 * 19 10 8 21 21 C 1.38078 * 119.92493 * 179.97438 * 20 19 10 22 22 C 1.38305 * 120.07881 * 359.97438 * 21 20 19 23 23 C 1.38314 * 120.15246 * 0.02562 * 22 21 20 24 24 C 1.38079 * 120.08015 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47607 * 299.99797 * 1 2 3 27 27 H 1.09006 * 109.46868 * 60.00017 * 1 2 3 28 28 H 1.08996 * 109.46907 * 239.99954 * 2 1 3 29 29 H 1.09002 * 109.47251 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47756 * 299.99727 * 3 2 1 31 31 H 1.09006 * 109.46862 * 60.00371 * 3 2 1 32 32 H 1.09000 * 109.47100 * 64.91688 * 7 6 4 33 33 H 1.08995 * 109.47464 * 304.92083 * 7 6 4 34 34 H 0.96997 * 120.00433 * 179.97438 * 14 13 11 35 35 H 1.08003 * 120.03997 * 359.70158 * 20 19 10 36 36 H 1.08001 * 119.96362 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.92358 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.95749 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.04161 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7269 -0.1233 2.0258 6 8 1.7080 -1.9956 1.4428 7 6 2.1309 -2.5828 2.7016 8 6 1.7881 -4.0503 2.7117 9 8 1.1609 -4.5328 1.7926 10 7 2.1782 -4.8263 3.7421 11 6 2.8265 -4.2682 4.8140 12 1 3.7174 -3.6778 4.6585 13 6 2.3374 -4.4620 6.0994 14 7 2.9428 -3.9044 7.1239 15 14 0.8191 -5.5155 6.3719 16 1 1.2323 -6.9019 6.7074 17 1 0.0204 -4.9528 7.4902 18 1 -0.0023 -5.5295 5.1349 19 6 1.9219 -6.2004 3.7185 20 6 2.4708 -7.0281 4.6903 21 6 2.2151 -8.3847 4.6642 22 6 1.4133 -8.9200 3.6725 23 6 0.8652 -8.0991 2.7036 24 6 1.1175 -6.7417 2.7230 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6194 -2.0845 3.5250 33 1 3.2080 -2.4606 2.8159 34 1 2.6011 -4.0395 8.0215 35 1 3.1003 -6.6114 5.4627 36 1 2.6418 -9.0287 5.4190 37 1 1.2153 -9.9815 3.6542 38 1 0.2392 -8.5204 1.9309 39 1 0.6896 -6.1014 1.9658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797581788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:27 Heat of formation + Delta-G solvation = -91.351536 kcal Electronic energy + Delta-G solvation = -23414.839123 eV Core-core repulsion = 19901.888768 eV Total energy + Delta-G solvation = -3512.950355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11361 -41.47807 -39.29732 -37.68457 -37.01872 -35.65306 -34.27150 -31.79401 -31.59206 -29.30539 -28.02356 -27.24764 -25.14897 -23.63963 -23.03837 -21.43447 -21.16833 -20.06081 -18.90634 -18.10116 -17.94324 -17.56603 -17.48100 -17.01720 -16.34940 -15.95836 -15.44540 -15.34335 -15.02502 -14.75663 -14.49223 -14.46323 -14.20958 -13.88252 -13.71885 -13.60838 -13.23139 -13.13488 -12.91345 -12.67786 -12.50650 -12.13631 -12.10877 -12.07403 -11.91901 -11.89721 -11.44229 -11.33293 -10.95015 -10.26156 -9.68619 -8.93310 -8.59492 -6.63048 0.34562 0.50785 1.07530 1.21495 1.26981 1.29122 1.37729 1.61489 2.08948 2.48720 2.66473 3.03915 3.53896 3.57386 3.91819 3.96270 4.04988 4.11407 4.16452 4.19241 4.37747 4.44978 4.64354 4.73724 4.74520 4.80381 4.86639 4.90017 5.00343 5.19215 5.23329 5.32647 5.35928 5.45049 5.53089 5.62534 5.69488 5.87829 5.93593 6.32212 6.59847 6.72323 7.05064 7.34758 8.42141 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.004972 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.178663 B = 5630.463778 C = 6558.031867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.134 4.134 4 C 0.454 3.546 5 O -0.538 6.538 6 O -0.344 6.344 7 C 0.079 3.921 8 C 0.496 3.504 9 O -0.551 6.551 10 N -0.414 5.414 11 C -0.374 4.374 12 H 0.089 0.911 13 C 0.058 3.942 14 N -0.884 5.884 15 Si 0.920 3.080 16 H -0.234 1.234 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.128 3.872 20 C -0.180 4.180 21 C -0.105 4.105 22 C -0.154 4.154 23 C -0.103 4.103 24 C -0.203 4.203 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.286 0.714 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 0.763 -10.906 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.191 4.191 4 C 0.298 3.702 5 O -0.427 6.427 6 O -0.260 6.260 7 C 0.002 3.998 8 C 0.287 3.713 9 O -0.434 6.434 10 N -0.126 5.126 11 C -0.501 4.501 12 H 0.107 0.893 13 C -0.150 4.150 14 N -0.518 5.518 15 Si 0.745 3.255 16 H -0.157 1.157 17 H -0.216 1.216 18 H -0.201 1.201 19 C 0.033 3.967 20 C -0.200 4.200 21 C -0.123 4.123 22 C -0.172 4.172 23 C -0.121 4.121 24 C -0.222 4.222 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.149 0.851 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.062 0.804 -10.879 12.026 hybrid contribution 0.051 -0.127 1.134 1.142 sum -5.011 0.677 -9.746 10.979 Atomic orbital electron populations 1.21820 0.90666 1.03381 1.04163 1.21284 0.99285 0.96871 0.92412 1.21751 1.01477 0.92161 1.03738 1.25011 0.76736 0.79359 0.89045 1.90660 1.36811 1.66970 1.48247 1.86499 1.72797 1.27926 1.38737 1.22298 1.02137 0.90705 0.84616 1.20554 0.79746 0.88299 0.82656 1.90244 1.41224 1.73835 1.38060 1.41299 1.49551 1.03696 1.18010 1.18879 1.11310 1.35347 0.84521 0.89311 1.25900 0.98449 0.95603 0.95060 1.69696 1.40703 1.41228 1.00210 0.86242 0.80053 0.81274 0.77891 1.15736 1.21622 1.20100 1.18719 0.97389 0.83978 0.96617 1.21046 1.03641 0.94785 1.00546 1.21261 0.98361 0.93352 0.99332 1.21444 0.99386 1.01141 0.95262 1.21456 0.99137 0.92359 0.99154 1.22776 1.00675 0.97929 1.00844 0.92116 0.92682 0.87725 0.85119 0.92638 0.87792 0.92857 0.88115 0.88583 0.90343 0.86218 0.83706 0.82621 0.83256 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.12 71.98 0.66 -1.93 16 2 C -0.08 -1.69 3.36 -11.54 -0.04 -1.73 16 3 C -0.13 -2.42 8.48 71.98 0.61 -1.81 16 4 C 0.45 14.86 7.25 71.24 0.52 15.38 16 5 O -0.54 -20.76 15.64 21.98 0.34 -20.42 16 6 O -0.34 -12.99 9.66 -45.07 -0.44 -13.43 16 7 C 0.08 3.35 4.87 71.24 0.35 3.70 16 8 C 0.50 23.45 7.65 87.66 0.67 24.12 16 9 O -0.55 -26.52 12.92 15.70 0.20 -26.32 16 10 N -0.41 -20.53 2.30 -458.90 -1.06 -21.59 16 11 C -0.37 -19.68 8.01 84.02 0.67 -19.01 16 12 H 0.09 4.96 7.70 -2.91 -0.02 4.94 16 13 C 0.06 3.05 4.61 84.91 0.39 3.44 16 14 N -0.88 -48.29 13.96 21.65 0.30 -47.98 16 15 Si 0.92 43.07 23.85 68.60 1.64 44.70 16 16 H -0.23 -10.10 6.14 99.48 0.61 -9.49 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.28 -13.73 6.48 99.48 0.64 -13.08 16 19 C 0.13 5.98 4.12 38.22 0.16 6.14 16 20 C -0.18 -7.83 5.57 22.40 0.12 -7.70 16 21 C -0.10 -3.67 9.76 22.25 0.22 -3.45 16 22 C -0.15 -4.72 10.04 22.30 0.22 -4.50 16 23 C -0.10 -3.48 10.04 22.25 0.22 -3.26 16 24 C -0.20 -8.68 9.03 22.41 0.20 -8.47 16 25 H 0.06 1.27 8.11 -2.38 -0.02 1.26 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 32 H 0.10 4.31 8.14 -2.39 -0.02 4.29 16 33 H 0.10 4.10 7.57 -2.39 -0.02 4.08 16 34 H 0.29 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.12 5.63 5.70 -2.91 -0.02 5.61 16 36 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 38 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.17 7.47 4.58 -58.54 -0.27 7.20 16 Total: -1.00 -65.65 323.04 6.61 -59.04 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.64 Total: 25.07 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.98 Total: 0.93 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -0.76 Total: -69.57 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: 0.11 Total: -60.16 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.64 Total: 44.70 kcal Total: -65.65 6.61 -59.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797581788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.310 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds