Wall clock time and date at job start Tue Mar 31 2020 07:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47392 * 2 1 4 4 C 1.50697 * 109.47232 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00071 * 0.02562 * 4 3 2 6 6 O 1.34229 * 119.99889 * 180.02562 * 4 3 2 7 7 C 1.45201 * 117.00061 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47413 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99954 * 354.94036 * 8 7 6 10 10 N 1.34770 * 120.00462 * 174.93858 * 8 7 6 11 11 C 1.37139 * 119.99880 * 5.67600 * 10 8 7 12 12 H 1.07997 * 120.00129 * 55.66600 * 11 10 8 13 13 C 1.38890 * 120.00207 * 235.67023 * 11 10 8 14 14 N 1.31424 * 119.99908 * 9.24641 * 13 11 10 15 15 Si 1.86802 * 120.00182 * 189.23950 * 13 11 10 16 16 H 1.48504 * 109.46729 * 90.00506 * 15 13 11 17 17 H 1.48497 * 109.47326 * 210.00074 * 15 13 11 18 18 H 1.48495 * 109.47054 * 330.00261 * 15 13 11 19 19 C 1.39787 * 120.00306 * 185.67775 * 10 8 7 20 20 C 1.38961 * 120.07792 * 175.18913 * 19 10 8 21 21 C 1.38082 * 119.92435 * 179.97438 * 20 19 10 22 22 C 1.38311 * 120.07409 * 359.97438 * 21 20 19 23 23 C 1.38312 * 120.15706 * 0.02562 * 22 21 20 24 24 C 1.38079 * 120.07859 * 0.02562 * 23 22 21 25 25 H 1.09006 * 109.46873 * 59.99800 * 1 2 3 26 26 H 1.08995 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46804 * 299.99870 * 1 2 3 28 28 H 1.09007 * 109.47200 * 239.99962 * 2 1 3 29 29 H 1.08998 * 109.47058 * 120.00495 * 2 1 3 30 30 H 1.09007 * 109.46979 * 59.99826 * 3 2 1 31 31 H 1.08998 * 109.47423 * 300.00271 * 3 2 1 32 32 H 1.09000 * 109.47152 * 60.00218 * 7 6 4 33 33 H 1.08999 * 109.46854 * 300.00309 * 7 6 4 34 34 H 0.97001 * 119.99727 * 184.98449 * 14 13 11 35 35 H 1.07998 * 120.04135 * 359.70126 * 20 19 10 36 36 H 1.08001 * 119.96344 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.92332 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.95882 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.04261 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1511 0.3961 0.0006 6 8 4.2182 2.6048 0.0013 7 6 5.6682 2.5289 0.0013 8 6 6.2443 3.9214 0.0027 9 8 5.5093 4.8818 -0.0891 10 7 7.5762 4.0997 0.1059 11 6 8.4161 3.0157 0.0924 12 1 8.3843 2.3181 -0.7314 13 6 9.3077 2.8149 1.1382 14 7 9.2255 3.5528 2.2226 15 14 10.6237 1.4960 1.0036 16 1 11.8488 2.0791 0.3998 17 1 10.9399 0.9722 2.3566 18 1 10.1287 0.3885 0.1472 19 6 8.1015 5.3894 0.2267 20 6 9.4637 5.5700 0.4335 21 6 9.9793 6.8455 0.5518 22 6 9.1416 7.9426 0.4643 23 6 7.7853 7.7665 0.2586 24 6 7.2627 6.4939 0.1403 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 6.0042 1.9972 -0.8890 33 1 6.0041 1.9962 0.8910 34 1 9.8914 3.4628 2.9222 35 1 10.1178 4.7137 0.5059 36 1 11.0379 6.9866 0.7130 37 1 9.5475 8.9391 0.5577 38 1 7.1342 8.6255 0.1903 39 1 6.2034 6.3571 -0.0199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797648415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:30 Heat of formation + Delta-G solvation = -82.240479 kcal Electronic energy + Delta-G solvation = -22998.259163 eV Core-core repulsion = 19485.703894 eV Total energy + Delta-G solvation = -3512.555270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33361 -39.60269 -37.34439 -36.16664 -35.10068 -34.51685 -32.06485 -29.94117 -29.62691 -28.58616 -26.93721 -25.24819 -22.61784 -21.73416 -21.19998 -20.26887 -19.61312 -17.97492 -17.44478 -16.58694 -16.14430 -15.90719 -15.64068 -15.21769 -15.02732 -14.45056 -14.12542 -13.74979 -13.36937 -13.07462 -12.93590 -12.85438 -12.41129 -12.18344 -12.11885 -11.89992 -11.72742 -11.54291 -11.34912 -11.29930 -11.16476 -10.90381 -10.87976 -10.51868 -10.28179 -10.26378 -10.08139 -9.32716 -8.82488 -8.23333 -7.84249 -6.97065 -6.40520 -4.66502 2.34190 2.44083 2.51908 2.77640 3.00584 3.09849 3.12100 3.61035 3.90024 4.37008 4.65895 4.70314 4.85005 4.97988 5.06174 5.29982 5.34752 5.49943 5.53537 5.60341 5.75419 5.83744 5.85074 5.93067 5.97795 6.00842 6.12659 6.14359 6.65322 6.67797 6.76425 6.83875 7.08228 7.16527 7.45569 7.55866 7.62310 7.69521 7.98152 8.00303 8.35541 8.74245 9.10027 9.47439 10.38110 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.004636 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.287356 B = 6037.597692 C = 7580.821549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.113 4.113 4 C 0.457 3.543 5 O -0.513 6.513 6 O -0.339 6.339 7 C 0.072 3.928 8 C 0.495 3.505 9 O -0.548 6.548 10 N -0.377 5.377 11 C -0.381 4.381 12 H 0.096 0.904 13 C 0.059 3.941 14 N -0.838 5.838 15 Si 0.916 3.084 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.263 1.263 19 C 0.184 3.816 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.171 4.171 23 C -0.120 4.120 24 C -0.191 4.191 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.277 0.723 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 -2.752 -2.813 8.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.150 4.150 4 C 0.300 3.700 5 O -0.401 6.401 6 O -0.254 6.254 7 C -0.004 4.004 8 C 0.286 3.714 9 O -0.431 6.431 10 N -0.086 5.086 11 C -0.507 4.507 12 H 0.114 0.886 13 C -0.152 4.152 14 N -0.469 5.469 15 Si 0.741 3.259 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.187 1.187 19 C 0.087 3.913 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.190 4.190 23 C -0.139 4.139 24 C -0.210 4.210 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.146 -2.685 -2.621 8.969 hybrid contribution 1.197 -0.677 0.267 1.401 sum -6.949 -3.362 -2.354 8.071 Atomic orbital electron populations 1.21774 0.95060 1.02018 1.02049 1.21378 0.95628 0.94364 1.03825 1.21428 0.87492 1.00175 1.05934 1.23782 0.91882 0.81799 0.72570 1.90661 1.70683 1.33156 1.45641 1.86481 1.21788 1.33976 1.83159 1.22558 0.75542 0.97176 1.05103 1.20262 0.82804 0.89358 0.78971 1.90217 1.59913 1.40688 1.52267 1.40788 1.03468 1.04530 1.59847 1.19422 1.20214 1.04238 1.06868 0.88632 1.25641 0.98903 0.97181 0.93488 1.70033 1.33107 1.38186 1.05556 0.86084 0.80656 0.80895 0.78274 1.19582 1.20406 1.18725 1.18239 0.92508 0.84383 0.96144 1.21027 0.94518 0.96869 1.00007 1.20777 0.98487 0.92668 1.02305 1.20817 0.94237 0.97522 1.06471 1.20874 0.94712 0.96626 1.01670 1.22792 1.03768 0.90938 1.03550 0.92494 0.92297 0.92466 0.91036 0.90999 0.87707 0.87727 0.88814 0.87797 0.91275 0.85013 0.87671 0.88075 0.87592 0.80841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.11 -1.14 5.22 -26.73 -0.14 -1.28 16 3 C -0.11 -1.25 5.81 -27.89 -0.16 -1.41 16 4 C 0.46 7.40 7.96 36.00 0.29 7.69 16 5 O -0.51 -9.51 15.73 -18.75 -0.29 -9.80 16 6 O -0.34 -6.45 9.76 -45.88 -0.45 -6.90 16 7 C 0.07 1.50 4.77 36.01 0.17 1.67 16 8 C 0.50 11.85 7.65 -10.99 -0.08 11.77 16 9 O -0.55 -13.72 12.90 -14.05 -0.18 -13.90 16 10 N -0.38 -9.43 2.62 -58.98 -0.15 -9.58 16 11 C -0.38 -9.24 7.61 -14.94 -0.11 -9.35 16 12 H 0.10 2.20 7.85 -52.49 -0.41 1.79 16 13 C 0.06 1.40 3.49 -17.48 -0.06 1.34 16 14 N -0.84 -21.38 11.39 55.49 0.63 -20.75 16 15 Si 0.92 18.47 29.57 -169.99 -5.03 13.44 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 19 C 0.18 4.59 6.05 -83.69 -0.51 4.08 16 20 C -0.10 -2.46 7.87 -39.37 -0.31 -2.77 16 21 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 22 C -0.17 -3.36 10.04 -39.53 -0.40 -3.76 16 23 C -0.12 -2.48 10.04 -39.61 -0.40 -2.87 16 24 C -0.19 -4.52 9.06 -39.37 -0.36 -4.87 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.76 8.10 -51.92 -0.42 0.34 16 29 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.81 8.13 -51.93 -0.42 1.39 16 33 H 0.10 2.21 8.04 -51.93 -0.42 1.79 16 34 H 0.28 6.67 8.32 -40.82 -0.34 6.33 16 35 H 0.13 3.22 5.15 -52.49 -0.27 2.95 16 36 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.18 4.26 4.50 -56.37 -0.25 4.01 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -29.18 331.89 -7.70 -36.88 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.13 Total: 9.12 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.10 Total: -3.51 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.48 Total: -30.33 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.92 Total: -30.60 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.18 -7.70 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797648415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.361 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds