Wall clock time and date at job start Tue Mar 31 2020 07:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47392 * 2 1 4 4 C 1.50697 * 109.47232 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00071 * 0.02562 * 4 3 2 6 6 O 1.34229 * 119.99889 * 180.02562 * 4 3 2 7 7 C 1.45201 * 117.00061 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47413 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99954 * 354.94036 * 8 7 6 10 10 N 1.34770 * 120.00462 * 174.93858 * 8 7 6 11 11 C 1.37139 * 119.99880 * 5.67600 * 10 8 7 12 12 H 1.07997 * 120.00129 * 55.66600 * 11 10 8 13 13 C 1.38890 * 120.00207 * 235.67023 * 11 10 8 14 14 N 1.31424 * 119.99908 * 9.24641 * 13 11 10 15 15 Si 1.86802 * 120.00182 * 189.23950 * 13 11 10 16 16 H 1.48504 * 109.46729 * 90.00506 * 15 13 11 17 17 H 1.48497 * 109.47326 * 210.00074 * 15 13 11 18 18 H 1.48495 * 109.47054 * 330.00261 * 15 13 11 19 19 C 1.39787 * 120.00306 * 185.67775 * 10 8 7 20 20 C 1.38961 * 120.07792 * 175.18913 * 19 10 8 21 21 C 1.38082 * 119.92435 * 179.97438 * 20 19 10 22 22 C 1.38311 * 120.07409 * 359.97438 * 21 20 19 23 23 C 1.38312 * 120.15706 * 0.02562 * 22 21 20 24 24 C 1.38079 * 120.07859 * 0.02562 * 23 22 21 25 25 H 1.09006 * 109.46873 * 59.99800 * 1 2 3 26 26 H 1.08995 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46804 * 299.99870 * 1 2 3 28 28 H 1.09007 * 109.47200 * 239.99962 * 2 1 3 29 29 H 1.08998 * 109.47058 * 120.00495 * 2 1 3 30 30 H 1.09007 * 109.46979 * 59.99826 * 3 2 1 31 31 H 1.08998 * 109.47423 * 300.00271 * 3 2 1 32 32 H 1.09000 * 109.47152 * 60.00218 * 7 6 4 33 33 H 1.08999 * 109.46854 * 300.00309 * 7 6 4 34 34 H 0.97001 * 119.99727 * 184.98449 * 14 13 11 35 35 H 1.07998 * 120.04135 * 359.70126 * 20 19 10 36 36 H 1.08001 * 119.96344 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.92332 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.95882 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.04261 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1511 0.3961 0.0006 6 8 4.2182 2.6048 0.0013 7 6 5.6682 2.5289 0.0013 8 6 6.2443 3.9214 0.0027 9 8 5.5093 4.8818 -0.0891 10 7 7.5762 4.0997 0.1059 11 6 8.4161 3.0157 0.0924 12 1 8.3843 2.3181 -0.7314 13 6 9.3077 2.8149 1.1382 14 7 9.2255 3.5528 2.2226 15 14 10.6237 1.4960 1.0036 16 1 11.8488 2.0791 0.3998 17 1 10.9399 0.9722 2.3566 18 1 10.1287 0.3885 0.1472 19 6 8.1015 5.3894 0.2267 20 6 9.4637 5.5700 0.4335 21 6 9.9793 6.8455 0.5518 22 6 9.1416 7.9426 0.4643 23 6 7.7853 7.7665 0.2586 24 6 7.2627 6.4939 0.1403 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 6.0042 1.9972 -0.8890 33 1 6.0041 1.9962 0.8910 34 1 9.8914 3.4628 2.9222 35 1 10.1178 4.7137 0.5059 36 1 11.0379 6.9866 0.7130 37 1 9.5475 8.9391 0.5577 38 1 7.1342 8.6255 0.1903 39 1 6.2034 6.3571 -0.0199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797648415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:29 Heat of formation + Delta-G solvation = -96.389403 kcal Electronic energy + Delta-G solvation = -22998.872707 eV Core-core repulsion = 19485.703894 eV Total energy + Delta-G solvation = -3513.168813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88248 -41.24283 -39.03359 -37.62856 -36.91155 -35.42670 -33.91952 -31.58680 -31.31428 -29.79637 -28.33674 -27.08957 -23.88125 -23.22275 -22.81565 -21.46222 -21.39362 -19.73788 -18.85603 -18.00691 -17.76340 -17.47749 -17.34669 -16.80829 -16.37459 -16.05567 -15.55617 -15.27559 -14.80898 -14.63323 -14.30300 -14.26982 -14.04862 -13.67943 -13.51585 -13.26784 -13.05395 -12.95199 -12.85659 -12.74699 -12.50477 -12.13611 -12.07554 -11.88793 -11.76260 -11.63224 -11.59957 -11.11763 -10.61661 -10.04891 -9.55435 -8.78629 -8.21595 -6.55797 0.61212 0.79548 1.13364 1.32817 1.40420 1.45120 1.54761 1.84685 2.21658 2.76863 2.84603 3.31317 3.65281 3.79971 3.94417 4.05508 4.11906 4.21719 4.31772 4.36529 4.49628 4.59038 4.65678 4.69058 4.90826 4.91822 4.97506 5.10065 5.17902 5.24989 5.29258 5.39297 5.41584 5.45866 5.76643 5.84709 5.86327 5.97813 6.17461 6.55938 6.65312 6.89192 7.26802 7.63636 8.56503 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.004636 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.287356 B = 6037.597692 C = 7580.821549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.105 4.105 4 C 0.452 3.548 5 O -0.540 6.540 6 O -0.350 6.350 7 C 0.085 3.915 8 C 0.481 3.519 9 O -0.568 6.568 10 N -0.388 5.388 11 C -0.394 4.394 12 H 0.101 0.899 13 C 0.026 3.974 14 N -0.871 5.871 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.257 1.257 19 C 0.149 3.851 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.161 4.161 23 C -0.118 4.118 24 C -0.215 4.215 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.278 0.722 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 -2.128 -3.024 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.142 4.142 4 C 0.298 3.702 5 O -0.430 6.430 6 O -0.266 6.266 7 C 0.008 3.992 8 C 0.273 3.727 9 O -0.452 6.452 10 N -0.097 5.097 11 C -0.521 4.521 12 H 0.118 0.882 13 C -0.181 4.181 14 N -0.504 5.504 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.181 1.181 19 C 0.053 3.947 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.179 4.179 23 C -0.137 4.137 24 C -0.234 4.234 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.201 -2.059 -2.845 8.921 hybrid contribution 1.183 -0.791 0.328 1.460 sum -7.018 -2.850 -2.517 7.982 Atomic orbital electron populations 1.21743 0.92699 1.02864 1.03025 1.21385 0.97516 0.93278 1.02816 1.21663 0.83157 1.01505 1.07913 1.24920 0.93614 0.80562 0.71150 1.90643 1.71574 1.33805 1.46939 1.86513 1.20643 1.35800 1.83641 1.22258 0.76958 0.95100 1.04878 1.20770 0.82740 0.90431 0.78766 1.90194 1.60265 1.41501 1.53262 1.41012 1.03909 1.04981 1.59827 1.19713 1.20555 1.04448 1.07353 0.88152 1.26367 1.00333 0.98683 0.92725 1.70135 1.33978 1.39898 1.06346 0.85123 0.78188 0.78407 0.78080 1.18790 1.20526 1.18090 1.18618 0.93498 0.84783 0.97766 1.21071 0.93964 0.97908 1.01483 1.21173 1.00300 0.91847 1.00908 1.21267 0.93527 0.99127 1.04023 1.21258 0.95968 0.96304 1.00160 1.22809 1.03236 0.92206 1.05161 0.91399 0.91583 0.91595 0.91955 0.92253 0.85737 0.85366 0.87921 0.88899 0.91238 0.86409 0.84716 0.83777 0.84419 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.11 -2.11 5.22 30.59 0.16 -1.95 16 3 C -0.11 -2.18 5.81 29.85 0.17 -2.01 16 4 C 0.45 14.69 7.96 71.23 0.57 15.26 16 5 O -0.54 -20.32 15.73 21.98 0.35 -19.98 16 6 O -0.35 -13.60 9.76 -45.07 -0.44 -14.04 16 7 C 0.08 3.63 4.77 71.24 0.34 3.97 16 8 C 0.48 23.98 7.65 87.66 0.67 24.65 16 9 O -0.57 -29.55 12.90 15.71 0.20 -29.34 16 10 N -0.39 -20.09 2.62 -458.91 -1.20 -21.29 16 11 C -0.39 -19.66 7.61 84.02 0.64 -19.02 16 12 H 0.10 4.74 7.85 -2.91 -0.02 4.72 16 13 C 0.03 1.28 3.49 84.91 0.30 1.58 16 14 N -0.87 -45.40 11.39 21.65 0.25 -45.16 16 15 Si 0.98 38.02 29.57 68.60 2.03 40.05 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 19 C 0.15 7.63 6.05 38.22 0.23 7.86 16 20 C -0.12 -5.90 7.87 22.41 0.18 -5.72 16 21 C -0.12 -4.92 10.04 22.25 0.22 -4.69 16 22 C -0.16 -5.81 10.04 22.30 0.22 -5.59 16 23 C -0.12 -4.68 10.04 22.25 0.22 -4.45 16 24 C -0.21 -10.28 9.06 22.41 0.20 -10.08 16 25 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.28 8.10 -2.38 -0.02 1.26 16 29 H 0.06 1.25 8.10 -2.39 -0.02 1.24 16 30 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.10 4.13 8.13 -2.39 -0.02 4.11 16 33 H 0.09 4.14 8.04 -2.39 -0.02 4.12 16 34 H 0.28 13.61 8.32 -92.71 -0.77 12.84 16 35 H 0.12 5.86 5.15 -2.91 -0.02 5.85 16 36 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.16 8.09 4.50 -64.49 -0.29 7.80 16 Total: -1.00 -64.88 331.89 6.80 -58.08 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.78 Total: 33.00 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.84 Total: -1.32 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -0.96 Total: -66.45 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: 0.11 Total: -63.36 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -64.88 6.80 -58.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797648415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.310 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds