Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33574 * 125.83809 * 2 1 4 4 C 1.34845 * 109.91477 * 180.15104 * 3 2 1 5 5 C 1.43205 * 125.64118 * 179.88218 * 4 3 2 6 6 N 4.69715 * 150.55222 * 359.76343 * 2 1 3 7 7 C 1.36050 * 108.71292 * 359.61677 * 4 3 2 8 8 C 1.37816 * 125.82886 * 179.73120 * 2 1 3 9 9 C 1.47336 * 126.78755 * 359.96338 * 8 2 1 10 10 O 1.21521 * 120.00140 * 0.02562 * 9 8 2 11 11 O 1.34764 * 119.99806 * 180.02562 * 9 8 2 12 12 C 1.45196 * 116.99853 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47205 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46809 * 300.00244 * 13 12 11 15 15 C 1.52997 * 109.46795 * 59.99738 * 13 12 11 16 16 C 1.53000 * 109.47238 * 180.02562 * 13 12 11 17 17 C 1.50693 * 109.46925 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00308 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99660 * 179.97438 * 17 16 13 20 20 N 1.31523 * 119.99852 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00427 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46910 * 89.99588 * 21 19 17 23 23 H 1.48492 * 109.47401 * 210.00051 * 21 19 17 24 24 H 1.48500 * 109.46935 * 330.00048 * 21 19 17 25 25 H 1.08997 * 109.47207 * 270.26878 * 1 2 3 26 26 H 1.09001 * 109.46885 * 30.27094 * 1 2 3 27 27 H 1.09000 * 109.47425 * 150.26816 * 1 2 3 28 28 H 1.07999 * 126.69516 * 180.20875 * 7 4 3 29 29 H 1.09006 * 109.47549 * 299.99964 * 12 11 9 30 30 H 1.09001 * 109.47195 * 60.00004 * 12 11 9 31 31 H 1.08998 * 109.47689 * 59.99814 * 14 13 12 32 32 H 1.09003 * 109.47202 * 180.02562 * 14 13 12 33 33 H 1.09001 * 109.47047 * 299.99661 * 14 13 12 34 34 H 1.09006 * 109.46886 * 60.00691 * 15 13 12 35 35 H 1.09001 * 109.46738 * 179.97438 * 15 13 12 36 36 H 1.08998 * 109.47721 * 300.00191 * 15 13 12 37 37 H 1.09003 * 109.46578 * 299.99996 * 16 13 12 38 38 H 1.09004 * 109.47099 * 59.99427 * 16 13 12 39 39 H 0.96998 * 120.00115 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2891 1.0829 0.0000 4 6 3.5858 0.7129 -0.0033 5 6 4.7075 1.6031 -0.0068 6 7 5.5973 2.3092 -0.0095 7 6 3.6520 -0.6460 0.0030 8 6 2.3138 -1.1174 0.0052 9 6 1.8736 -2.5234 0.0126 10 8 0.6877 -2.7889 0.0141 11 8 2.7861 -3.5151 0.0177 12 6 2.2804 -4.8761 0.0254 13 6 3.4549 -5.8566 0.0296 14 6 4.3076 -5.6364 -1.2215 15 6 4.3096 -5.6230 1.2769 16 6 2.9220 -7.2908 0.0371 17 6 4.0789 -8.2564 0.0419 18 1 5.0928 -7.8845 0.0394 19 6 3.8429 -9.6149 0.0495 20 7 4.8526 -10.4577 0.0532 21 14 2.0892 -10.2583 0.0545 22 1 1.6233 -10.4363 -1.3443 23 1 2.0427 -11.5632 0.7616 24 1 1.2075 -9.2867 0.7500 25 1 -0.3633 0.0048 1.0276 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5097 28 1 4.5484 -1.2484 0.0056 29 1 1.6725 -5.0329 0.9165 30 1 1.6718 -5.0426 -0.8635 31 1 4.6872 -4.6147 -1.2273 32 1 5.1441 -6.3352 -1.2188 33 1 3.6986 -5.8028 -2.1101 34 1 3.7021 -5.7799 2.1683 35 1 5.1462 -6.3218 1.2801 36 1 4.6893 -4.6013 1.2711 37 1 2.3143 -7.4479 0.9283 38 1 2.3132 -7.4568 -0.8517 39 1 4.6866 -11.4134 0.0581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798876506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -53.606500 kcal Electronic energy + Delta-G solvation = -22483.825709 eV Core-core repulsion = 18972.512101 eV Total energy + Delta-G solvation = -3511.313607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.40809 -40.19453 -37.39733 -37.08380 -35.55595 -33.97325 -32.60070 -32.31260 -28.52930 -27.90418 -26.64438 -26.48464 -24.33949 -22.80271 -22.19150 -21.23965 -19.42340 -18.14187 -17.37838 -17.24521 -16.86340 -16.12352 -15.98751 -15.78602 -14.35895 -14.24451 -14.08547 -13.99423 -13.83401 -13.76143 -13.49135 -13.26668 -13.20529 -13.08073 -12.61867 -12.48249 -12.36876 -12.24015 -11.40148 -11.09362 -11.01517 -10.68778 -10.63306 -10.59025 -10.46346 -10.39720 -9.89237 -9.77467 -9.57759 -9.08431 -9.02989 -8.56214 -6.06372 -4.04067 0.40274 1.00819 1.39433 2.42339 2.64164 2.69508 2.92110 3.28733 3.37067 3.39543 3.48995 4.08441 4.33674 4.42718 4.67496 4.86061 5.02524 5.11664 5.17131 5.24741 5.32173 5.36949 5.56494 5.60824 5.66173 5.89437 6.04963 6.21909 6.23717 6.45006 6.47888 6.63548 6.64490 6.83710 6.91464 7.03554 7.05608 7.16896 7.31146 7.70850 7.78553 8.50694 8.98131 9.55498 11.06304 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.003260 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.703471 B = 8587.818725 C = 9476.855854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.121 3.879 3 O -0.144 6.144 4 C 0.022 3.978 5 C 0.293 3.707 6 N -0.376 5.376 7 C -0.061 4.061 8 C -0.224 4.224 9 C 0.536 3.464 10 O -0.510 6.510 11 O -0.339 6.339 12 C 0.078 3.922 13 C -0.049 4.049 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.003 4.003 17 C -0.510 4.510 18 H 0.080 0.920 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.874 3.126 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.180 0.820 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 21.392 -0.096 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 O -0.038 6.038 4 C -0.029 4.029 5 C -0.022 4.022 6 N -0.054 5.054 7 C -0.084 4.084 8 C -0.227 4.227 9 C 0.381 3.619 10 O -0.401 6.401 11 O -0.255 6.255 12 C 0.005 3.995 13 C -0.049 4.049 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.040 4.040 17 C -0.548 4.548 18 H 0.098 0.902 19 C -0.134 4.134 20 N -0.541 5.541 21 Si 0.702 3.298 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.197 0.803 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.768 22.466 -0.095 23.464 hybrid contribution -1.279 -0.984 -0.001 1.614 sum -8.047 21.482 -0.096 22.940 Atomic orbital electron populations 1.20838 0.82318 1.06053 1.05382 1.23505 0.94255 0.82098 0.93607 1.83949 1.15148 1.34311 1.70374 1.16124 0.79474 0.89829 1.17478 1.23409 0.92031 0.92761 0.94045 1.81365 1.09578 1.05533 1.08958 1.22097 0.98520 0.91662 0.96117 1.19462 0.93323 0.91775 1.18101 1.19758 0.84095 0.85125 0.72953 1.90820 1.17820 1.84734 1.46728 1.86549 1.38912 1.17054 1.82965 1.23575 0.98125 0.75677 1.02088 1.20595 0.93250 0.94290 0.96807 1.21740 1.00534 1.00250 0.96015 1.21735 1.00516 1.00226 0.96038 1.19624 0.97477 0.90389 0.96519 1.21034 0.93453 0.89798 1.50535 0.90209 1.24993 0.96622 0.97044 0.94726 1.69899 1.30560 1.02516 1.51164 0.86865 0.85999 0.78438 0.78506 1.20336 1.21438 1.19045 0.88145 0.89414 0.86487 0.80297 0.91359 0.91373 0.93952 0.90990 0.93768 0.93764 0.90990 0.93948 0.96345 0.96789 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 9.89 36.01 0.36 -0.16 16 2 C 0.12 1.00 7.41 -34.46 -0.26 0.75 16 3 O -0.14 -1.20 10.61 6.11 0.06 -1.14 16 4 C 0.02 0.19 7.03 -38.44 -0.27 -0.08 16 5 C 0.29 2.78 15.87 -22.47 -0.36 2.42 16 6 N -0.38 -4.27 18.54 41.83 0.78 -3.49 16 7 C -0.06 -0.54 10.67 -38.97 -0.42 -0.95 16 8 C -0.22 -2.27 6.16 -104.95 -0.65 -2.92 16 9 C 0.54 6.98 7.96 34.43 0.27 7.26 16 10 O -0.51 -7.40 14.62 -19.28 -0.28 -7.68 16 11 O -0.34 -4.87 8.75 -40.67 -0.36 -5.22 16 12 C 0.08 1.26 4.33 37.16 0.16 1.42 16 13 C -0.05 -0.91 0.61 -154.51 -0.09 -1.00 16 14 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 15 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 16 C 0.00 -0.06 3.11 -27.89 -0.09 -0.15 16 17 C -0.51 -13.50 8.20 -34.44 -0.28 -13.79 16 18 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 19 C 0.07 1.88 5.47 -17.81 -0.10 1.78 16 20 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 21 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.12 0.83 6.48 -51.93 -0.34 0.50 16 28 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 32 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 36 H 0.04 0.65 7.68 -51.93 -0.40 0.26 16 37 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 38 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -30.38 338.55 -4.73 -35.12 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.02 Total: -3.56 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.12 Total: -9.36 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 1.55 Total: -29.63 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.57 Total: -14.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.38 -4.73 -35.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.491 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds