Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33574 * 125.83809 * 2 1 4 4 C 1.34845 * 109.91477 * 180.15104 * 3 2 1 5 5 C 1.43205 * 125.64118 * 179.88218 * 4 3 2 6 6 N 4.69715 * 150.55222 * 359.76343 * 2 1 3 7 7 C 1.36050 * 108.71292 * 359.61677 * 4 3 2 8 8 C 1.37816 * 125.82886 * 179.73120 * 2 1 3 9 9 C 1.47336 * 126.78755 * 359.96338 * 8 2 1 10 10 O 1.21521 * 120.00140 * 0.02562 * 9 8 2 11 11 O 1.34764 * 119.99806 * 180.02562 * 9 8 2 12 12 C 1.45196 * 116.99853 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47205 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46809 * 300.00244 * 13 12 11 15 15 C 1.52997 * 109.46795 * 59.99738 * 13 12 11 16 16 C 1.53000 * 109.47238 * 180.02562 * 13 12 11 17 17 C 1.50693 * 109.46925 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00308 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99660 * 179.97438 * 17 16 13 20 20 N 1.31523 * 119.99852 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00427 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46910 * 89.99588 * 21 19 17 23 23 H 1.48492 * 109.47401 * 210.00051 * 21 19 17 24 24 H 1.48500 * 109.46935 * 330.00048 * 21 19 17 25 25 H 1.08997 * 109.47207 * 270.26878 * 1 2 3 26 26 H 1.09001 * 109.46885 * 30.27094 * 1 2 3 27 27 H 1.09000 * 109.47425 * 150.26816 * 1 2 3 28 28 H 1.07999 * 126.69516 * 180.20875 * 7 4 3 29 29 H 1.09006 * 109.47549 * 299.99964 * 12 11 9 30 30 H 1.09001 * 109.47195 * 60.00004 * 12 11 9 31 31 H 1.08998 * 109.47689 * 59.99814 * 14 13 12 32 32 H 1.09003 * 109.47202 * 180.02562 * 14 13 12 33 33 H 1.09001 * 109.47047 * 299.99661 * 14 13 12 34 34 H 1.09006 * 109.46886 * 60.00691 * 15 13 12 35 35 H 1.09001 * 109.46738 * 179.97438 * 15 13 12 36 36 H 1.08998 * 109.47721 * 300.00191 * 15 13 12 37 37 H 1.09003 * 109.46578 * 299.99996 * 16 13 12 38 38 H 1.09004 * 109.47099 * 59.99427 * 16 13 12 39 39 H 0.96998 * 120.00115 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2891 1.0829 0.0000 4 6 3.5858 0.7129 -0.0033 5 6 4.7075 1.6031 -0.0068 6 7 5.5973 2.3092 -0.0095 7 6 3.6520 -0.6460 0.0030 8 6 2.3138 -1.1174 0.0052 9 6 1.8736 -2.5234 0.0126 10 8 0.6877 -2.7889 0.0141 11 8 2.7861 -3.5151 0.0177 12 6 2.2804 -4.8761 0.0254 13 6 3.4549 -5.8566 0.0296 14 6 4.3076 -5.6364 -1.2215 15 6 4.3096 -5.6230 1.2769 16 6 2.9220 -7.2908 0.0371 17 6 4.0789 -8.2564 0.0419 18 1 5.0928 -7.8845 0.0394 19 6 3.8429 -9.6149 0.0495 20 7 4.8526 -10.4577 0.0532 21 14 2.0892 -10.2583 0.0545 22 1 1.6233 -10.4363 -1.3443 23 1 2.0427 -11.5632 0.7616 24 1 1.2075 -9.2867 0.7500 25 1 -0.3633 0.0048 1.0276 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5097 28 1 4.5484 -1.2484 0.0056 29 1 1.6725 -5.0329 0.9165 30 1 1.6718 -5.0426 -0.8635 31 1 4.6872 -4.6147 -1.2273 32 1 5.1441 -6.3352 -1.2188 33 1 3.6986 -5.8028 -2.1101 34 1 3.7021 -5.7799 2.1683 35 1 5.1462 -6.3218 1.2801 36 1 4.6893 -4.6013 1.2711 37 1 2.3143 -7.4479 0.9283 38 1 2.3132 -7.4568 -0.8517 39 1 4.6866 -11.4134 0.0581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798876506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -69.765796 kcal Electronic energy + Delta-G solvation = -22484.526429 eV Core-core repulsion = 18972.512101 eV Total energy + Delta-G solvation = -3512.014327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -44.09867 -41.27481 -38.73208 -37.88906 -36.85014 -34.72301 -34.34497 -33.21020 -29.97184 -29.04168 -27.94020 -27.85302 -25.41465 -24.21916 -23.14155 -22.07182 -20.35868 -19.63703 -18.87593 -18.36231 -17.96358 -17.19616 -16.83857 -16.62199 -16.19212 -15.48210 -15.27034 -15.01506 -14.76681 -14.75834 -14.52844 -14.23506 -14.13753 -14.05442 -13.80426 -13.72858 -13.66074 -13.01803 -12.92568 -12.82986 -12.65675 -12.24739 -12.10719 -11.83395 -11.74685 -11.61557 -11.35438 -11.26511 -11.18190 -10.90556 -10.68913 -9.76654 -8.20427 -6.21496 -0.27452 0.21260 0.68539 1.38852 1.41087 1.50987 1.58720 1.73026 1.83852 2.14052 2.41134 2.79561 3.14797 3.43766 3.51922 3.87850 3.95094 3.99357 4.19686 4.25502 4.42044 4.57171 4.63396 4.63835 4.66187 4.71414 4.93530 5.02421 5.03580 5.15030 5.15227 5.31179 5.41900 5.43173 5.46829 5.57342 5.60647 5.68278 5.78387 6.10407 6.39486 6.72011 6.86018 7.41040 8.95372 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.003260 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.703471 B = 8587.818725 C = 9476.855854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.145 3.855 3 O -0.141 6.141 4 C 0.019 3.981 5 C 0.315 3.685 6 N -0.412 5.412 7 C -0.051 4.051 8 C -0.249 4.249 9 C 0.538 3.462 10 O -0.527 6.527 11 O -0.341 6.341 12 C 0.088 3.912 13 C -0.049 4.049 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.003 4.003 17 C -0.504 4.504 18 H 0.049 0.951 19 C 0.004 3.996 20 N -0.953 5.953 21 Si 0.937 3.063 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.247 1.247 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.191 0.809 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.955 23.372 -0.074 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 O -0.034 6.034 4 C -0.031 4.031 5 C 0.000 4.000 6 N -0.090 5.090 7 C -0.074 4.074 8 C -0.252 4.252 9 C 0.384 3.616 10 O -0.419 6.419 11 O -0.257 6.257 12 C 0.015 3.985 13 C -0.049 4.049 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.041 4.041 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.192 4.192 20 N -0.595 5.595 21 Si 0.761 3.239 22 H -0.196 1.196 23 H -0.216 1.216 24 H -0.170 1.170 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.208 0.792 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.977 24.482 -0.074 26.076 hybrid contribution -0.575 -1.511 -0.009 1.616 sum -9.553 22.972 -0.083 24.879 Atomic orbital electron populations 1.21004 0.80454 1.06767 1.06533 1.23944 0.95083 0.81415 0.90686 1.83982 1.15012 1.34196 1.70246 1.15935 0.79384 0.89457 1.18338 1.23382 0.91644 0.92038 0.92971 1.81391 1.10619 1.06635 1.10362 1.22212 0.98513 0.91703 0.94936 1.19336 0.94332 0.90656 1.20864 1.20075 0.83692 0.85607 0.72201 1.90817 1.18381 1.85005 1.47695 1.86518 1.39276 1.16478 1.83418 1.23205 0.96546 0.76337 1.02431 1.20454 0.94263 0.92899 0.97284 1.21667 0.99470 1.00922 0.95933 1.21663 0.99452 1.00899 0.95959 1.19575 0.95873 0.92014 0.96594 1.21332 0.93720 0.90600 1.48507 0.93272 1.25873 1.00793 0.97580 0.94951 1.70053 1.33020 1.02805 1.53575 0.85857 0.81139 0.77936 0.78929 1.19568 1.21629 1.17011 0.86585 0.86770 0.87604 0.79155 0.91107 0.91049 0.91452 0.93934 0.93431 0.93463 0.93925 0.91443 0.96156 0.96298 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.89 71.24 0.70 -0.06 16 2 C 0.15 1.97 7.41 25.59 0.19 2.16 16 3 O -0.14 -1.94 10.61 -1.07 -0.01 -1.96 16 4 C 0.02 0.29 7.03 23.01 0.16 0.45 16 5 C 0.31 5.47 15.87 88.33 1.40 6.87 16 6 N -0.41 -8.94 18.54 19.00 0.35 -8.58 16 7 C -0.05 -0.77 10.67 22.66 0.24 -0.53 16 8 C -0.25 -4.41 6.16 -20.08 -0.12 -4.54 16 9 C 0.54 12.72 7.96 70.22 0.56 13.28 16 10 O -0.53 -14.10 14.62 19.77 0.29 -13.81 16 11 O -0.34 -8.93 8.75 -56.75 -0.50 -9.43 16 12 C 0.09 2.64 4.33 71.98 0.31 2.96 16 13 C -0.05 -1.74 0.61 -52.18 -0.03 -1.77 16 14 C -0.12 -4.24 8.08 71.98 0.58 -3.66 16 15 C -0.12 -4.24 8.08 71.98 0.58 -3.66 16 16 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 17 C -0.50 -27.11 8.20 25.60 0.21 -26.90 16 18 H 0.05 2.89 5.92 -2.91 -0.02 2.87 16 19 C 0.00 0.23 5.47 84.65 0.46 0.70 16 20 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 21 Si 0.94 43.19 27.47 68.60 1.88 45.07 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 25 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.11 1.23 6.48 -2.39 -0.02 1.22 16 28 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 29 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.96 7.68 -2.39 -0.02 1.94 16 32 H 0.04 1.70 6.62 -2.39 -0.02 1.69 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.04 1.71 6.62 -2.39 -0.02 1.69 16 36 H 0.07 1.97 7.68 -2.39 -0.02 1.95 16 37 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 38 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 39 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -66.17 338.55 8.68 -57.49 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.02 Total: 4.17 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 5.34 Total: -14.74 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: 0.65 Total: -66.79 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.22 Total: -25.20 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Total: -66.17 8.68 -57.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.275 kcal (2) G-P(sol) polarization free energy of solvation -66.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds