Wall clock time and date at job start Tue Mar 31 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.40203 * 120.36673 * 2 1 4 4 C 1.35349 * 119.94650 * 179.77245 * 3 2 1 5 5 N 1.35763 * 120.70286 * 0.50677 * 4 3 2 6 6 C 1.46505 * 119.62619 * 179.76545 * 5 4 3 7 7 C 1.50709 * 109.46771 * 269.72794 * 6 5 4 8 8 O 1.20819 * 119.99894 * 359.72396 * 7 6 5 9 9 O 1.34223 * 119.99635 * 179.97438 * 7 6 5 10 10 C 1.45205 * 117.00068 * 175.19278 * 9 7 6 11 11 C 1.50703 * 112.84649 * 54.50033 * 10 9 7 12 12 H 1.07999 * 119.99993 * 244.95154 * 11 10 9 13 13 C 1.37879 * 119.99773 * 64.96110 * 11 10 9 14 14 N 1.31518 * 120.00009 * 354.95089 * 13 11 10 15 15 Si 1.86804 * 119.99804 * 174.95485 * 13 11 10 16 16 H 1.48500 * 109.47092 * 89.99651 * 15 13 11 17 17 H 1.48491 * 109.46974 * 209.99621 * 15 13 11 18 18 H 1.48494 * 109.47200 * 330.00050 * 15 13 11 19 19 C 1.53780 * 113.60993 * 283.19713 * 10 9 7 20 20 C 1.53786 * 87.08016 * 220.01603 * 19 10 9 21 21 C 1.53783 * 87.08083 * 25.43309 * 20 19 10 22 22 C 1.34663 * 120.75135 * 359.49090 * 5 4 3 23 23 O 1.22060 * 119.98551 * 180.27568 * 22 5 4 24 24 C 1.36396 * 120.36936 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47448 * 269.97690 * 1 2 3 26 26 H 1.09003 * 109.47412 * 29.97905 * 1 2 3 27 27 H 1.08998 * 109.47078 * 149.97769 * 1 2 3 28 28 H 1.07996 * 120.02513 * 0.04052 * 3 2 1 29 29 H 1.07999 * 119.64827 * 180.27116 * 4 3 2 30 30 H 1.08992 * 109.47226 * 149.72934 * 6 5 4 31 31 H 1.08998 * 109.47138 * 29.72406 * 6 5 4 32 32 H 0.97002 * 119.99290 * 185.00320 * 14 13 11 33 33 H 1.08992 * 113.61821 * 334.56578 * 19 10 9 34 34 H 1.09001 * 113.61169 * 105.47244 * 19 10 9 35 35 H 1.09002 * 113.61319 * 270.88885 * 20 19 10 36 36 H 1.08996 * 113.69104 * 139.99351 * 20 19 10 37 37 H 1.08994 * 113.61928 * 220.01828 * 21 20 19 38 38 H 1.09002 * 113.68883 * 89.12110 * 21 20 19 39 39 H 1.08006 * 120.34992 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1998 0.0047 5 7 4.2537 0.0274 -0.0010 6 6 5.7187 0.0442 -0.0010 7 6 6.2210 0.0500 -1.4219 8 8 5.4359 0.0360 -2.3401 9 8 7.5405 0.0657 -1.6671 10 6 7.9543 -0.0380 -3.0551 11 6 7.3177 1.0067 -3.9351 12 1 6.6349 0.7104 -4.7177 13 6 7.6070 2.3408 -3.7412 14 7 8.3593 2.7100 -2.7276 15 14 6.9305 3.6238 -4.9184 16 1 5.6094 4.0952 -4.4308 17 1 7.8693 4.7719 -4.9920 18 1 6.7748 3.0243 -6.2679 19 6 7.8589 -1.4645 -3.6213 20 6 9.1889 -1.1836 -4.3405 21 6 9.4771 -0.1520 -3.2371 22 6 3.6016 -1.1508 -0.0010 23 8 4.2312 -2.1965 -0.0010 24 6 2.1965 -1.1768 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6821 2.1486 0.0007 29 1 4.1102 2.1344 0.0091 30 1 6.0922 -0.8415 0.5128 31 1 6.0718 0.9383 0.5128 32 1 8.5033 3.6524 -2.5485 33 1 7.9296 -2.2419 -2.8606 34 1 7.0180 -1.6097 -4.2995 35 1 9.0657 -0.7422 -5.3295 36 1 9.8758 -2.0299 -4.3372 37 1 9.9425 0.7624 -3.6049 38 1 9.9903 -0.5692 -2.3706 39 1 1.6682 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:07 Heat of formation + Delta-G solvation = -60.847882 kcal Electronic energy + Delta-G solvation = -23845.228222 eV Core-core repulsion = 20333.600605 eV Total energy + Delta-G solvation = -3511.627617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22952 -39.19346 -37.17066 -36.82150 -35.09392 -34.16295 -32.33202 -30.41290 -29.32014 -27.11954 -26.02745 -24.56521 -23.55274 -23.13957 -21.60061 -20.12599 -18.59888 -17.37816 -17.29808 -17.02745 -16.05887 -15.87044 -15.15605 -14.94182 -14.64684 -14.46409 -14.14172 -14.01368 -13.83617 -13.44264 -12.92888 -12.76103 -12.41103 -12.21014 -11.90134 -11.61755 -11.57063 -11.53220 -11.13685 -11.07418 -10.89315 -10.45175 -10.31654 -10.01758 -9.87812 -9.81469 -9.73226 -9.26817 -8.85157 -8.57503 -8.56040 -7.79752 -6.16388 -4.24819 0.96751 2.04637 2.70373 3.21954 3.28397 3.33905 3.38838 3.70364 4.09079 4.31380 4.64986 4.71694 4.94889 5.07782 5.14061 5.29841 5.40068 5.44221 5.57137 5.59139 5.65453 5.74748 5.75436 5.89677 6.04128 6.10470 6.21946 6.38593 6.45099 6.50736 6.64563 6.66447 6.88698 7.09178 7.26981 7.28860 7.51878 7.72846 7.84933 8.25479 8.33111 8.77219 9.11924 9.42216 10.88279 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.005552 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.567933 B = 5041.564472 C = 5980.033807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.015 3.985 3 C -0.239 4.239 4 C 0.156 3.844 5 N -0.478 5.478 6 C 0.089 3.911 7 C 0.451 3.549 8 O -0.490 6.490 9 O -0.346 6.346 10 C 0.238 3.762 11 C -0.500 4.500 12 H 0.067 0.933 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.162 4.162 20 C -0.130 4.130 21 C -0.105 4.105 22 C 0.522 3.478 23 O -0.554 6.554 24 C -0.252 4.252 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.162 0.838 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -0.805 7.595 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.011 3.989 3 C -0.262 4.262 4 C 0.028 3.972 5 N -0.188 5.188 6 C -0.034 4.034 7 C 0.291 3.709 8 O -0.376 6.376 9 O -0.262 6.262 10 C 0.205 3.795 11 C -0.537 4.537 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.506 5.506 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.199 4.199 20 C -0.168 4.168 21 C -0.143 4.143 22 C 0.325 3.675 23 O -0.437 6.437 24 C -0.274 4.274 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.179 0.821 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.715 -1.345 7.311 11.454 hybrid contribution -0.438 0.978 -0.688 1.274 sum -9.152 -0.367 6.623 11.303 Atomic orbital electron populations 1.20897 0.90626 1.03416 1.02764 1.20154 0.96523 0.92745 0.89437 1.20453 0.92316 0.98761 1.14647 1.21973 0.93589 0.89783 0.91829 1.45123 1.07732 1.07196 1.58780 1.21496 0.78193 1.07439 0.96285 1.22704 0.83368 0.74602 0.90246 1.90615 1.57210 1.44075 1.45748 1.86421 1.22284 1.81355 1.36155 1.21285 0.91836 0.90986 0.75402 1.20934 1.26685 0.90218 1.15912 0.91475 1.25043 0.94091 0.98617 0.95438 1.70035 1.36528 1.16440 1.27548 0.86553 0.78703 0.80871 0.81797 1.20567 1.21031 1.19557 1.23559 0.97689 0.98987 0.99705 1.22512 0.96967 0.98496 0.98808 1.22885 0.96612 0.98498 0.96314 1.17065 0.89293 0.82501 0.78686 1.90938 1.69233 1.30323 1.53224 1.21853 0.92320 0.99336 1.13895 0.90347 0.90881 0.90981 0.83929 0.82066 0.85347 0.85830 0.92797 0.91920 0.92101 0.90234 0.92870 0.90498 0.92188 0.83822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.03 36.00 0.36 -0.65 16 2 C 0.02 0.19 5.89 -104.55 -0.62 -0.43 16 3 C -0.24 -2.85 9.71 -39.87 -0.39 -3.23 16 4 C 0.16 2.14 10.28 -16.84 -0.17 1.97 16 5 N -0.48 -8.08 2.07 -121.06 -0.25 -8.33 16 6 C 0.09 1.56 5.93 -5.19 -0.03 1.53 16 7 C 0.45 10.48 7.67 36.01 0.28 10.76 16 8 O -0.49 -12.85 14.75 -18.74 -0.28 -13.13 16 9 O -0.35 -8.64 9.93 -39.24 -0.39 -9.03 16 10 C 0.24 6.03 0.50 -90.96 -0.05 5.99 16 11 C -0.50 -13.71 6.30 -34.44 -0.22 -13.93 16 12 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 13 C 0.07 1.96 5.24 -17.82 -0.09 1.87 16 14 N -0.87 -23.62 12.54 55.43 0.70 -22.93 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.16 -3.68 7.28 -25.92 -0.19 -3.87 16 20 C -0.13 -2.66 7.81 -25.92 -0.20 -2.86 16 21 C -0.11 -2.41 7.19 -25.92 -0.19 -2.60 16 22 C 0.52 9.71 7.40 -15.44 -0.11 9.59 16 23 O -0.55 -12.22 16.64 4.86 0.08 -12.14 16 24 C -0.25 -3.81 9.65 -39.38 -0.38 -4.19 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.16 1.83 8.03 -52.49 -0.42 1.41 16 30 H 0.13 2.15 7.39 -51.93 -0.38 1.76 16 31 H 0.12 1.72 8.01 -51.93 -0.42 1.31 16 32 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.44 8.09 -51.93 -0.42 1.01 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.88 7.63 -51.93 -0.40 1.48 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.14 1.96 8.06 -52.48 -0.42 1.53 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -34.17 335.95 -7.48 -41.65 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.38 Total: 2.89 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.00 Total: -0.07 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.44 Total: -31.26 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.59 Total: -34.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.17 -7.48 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.195 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds