Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.40203 * 120.36673 * 2 1 4 4 C 1.35349 * 119.94650 * 179.77245 * 3 2 1 5 5 N 1.35763 * 120.70286 * 0.50677 * 4 3 2 6 6 C 1.46505 * 119.62619 * 179.76545 * 5 4 3 7 7 C 1.50709 * 109.46771 * 269.72794 * 6 5 4 8 8 O 1.20819 * 119.99894 * 359.72396 * 7 6 5 9 9 O 1.34223 * 119.99635 * 179.97438 * 7 6 5 10 10 C 1.45205 * 117.00068 * 175.19278 * 9 7 6 11 11 C 1.50703 * 112.84649 * 54.50033 * 10 9 7 12 12 H 1.07999 * 119.99993 * 244.95154 * 11 10 9 13 13 C 1.37879 * 119.99773 * 64.96110 * 11 10 9 14 14 N 1.31518 * 120.00009 * 354.95089 * 13 11 10 15 15 Si 1.86804 * 119.99804 * 174.95485 * 13 11 10 16 16 H 1.48500 * 109.47092 * 89.99651 * 15 13 11 17 17 H 1.48491 * 109.46974 * 209.99621 * 15 13 11 18 18 H 1.48494 * 109.47200 * 330.00050 * 15 13 11 19 19 C 1.53780 * 113.60993 * 283.19713 * 10 9 7 20 20 C 1.53786 * 87.08016 * 220.01603 * 19 10 9 21 21 C 1.53783 * 87.08083 * 25.43309 * 20 19 10 22 22 C 1.34663 * 120.75135 * 359.49090 * 5 4 3 23 23 O 1.22060 * 119.98551 * 180.27568 * 22 5 4 24 24 C 1.36396 * 120.36936 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47448 * 269.97690 * 1 2 3 26 26 H 1.09003 * 109.47412 * 29.97905 * 1 2 3 27 27 H 1.08998 * 109.47078 * 149.97769 * 1 2 3 28 28 H 1.07996 * 120.02513 * 0.04052 * 3 2 1 29 29 H 1.07999 * 119.64827 * 180.27116 * 4 3 2 30 30 H 1.08992 * 109.47226 * 149.72934 * 6 5 4 31 31 H 1.08998 * 109.47138 * 29.72406 * 6 5 4 32 32 H 0.97002 * 119.99290 * 185.00320 * 14 13 11 33 33 H 1.08992 * 113.61821 * 334.56578 * 19 10 9 34 34 H 1.09001 * 113.61169 * 105.47244 * 19 10 9 35 35 H 1.09002 * 113.61319 * 270.88885 * 20 19 10 36 36 H 1.08996 * 113.69104 * 139.99351 * 20 19 10 37 37 H 1.08994 * 113.61928 * 220.01828 * 21 20 19 38 38 H 1.09002 * 113.68883 * 89.12110 * 21 20 19 39 39 H 1.08006 * 120.34992 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1998 0.0047 5 7 4.2537 0.0274 -0.0010 6 6 5.7187 0.0442 -0.0010 7 6 6.2210 0.0500 -1.4219 8 8 5.4359 0.0360 -2.3401 9 8 7.5405 0.0657 -1.6671 10 6 7.9543 -0.0380 -3.0551 11 6 7.3177 1.0067 -3.9351 12 1 6.6349 0.7104 -4.7177 13 6 7.6070 2.3408 -3.7412 14 7 8.3593 2.7100 -2.7276 15 14 6.9305 3.6238 -4.9184 16 1 5.6094 4.0952 -4.4308 17 1 7.8693 4.7719 -4.9920 18 1 6.7748 3.0243 -6.2679 19 6 7.8589 -1.4645 -3.6213 20 6 9.1889 -1.1836 -4.3405 21 6 9.4771 -0.1520 -3.2371 22 6 3.6016 -1.1508 -0.0010 23 8 4.2312 -2.1965 -0.0010 24 6 2.1965 -1.1768 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6821 2.1486 0.0007 29 1 4.1102 2.1344 0.0091 30 1 6.0922 -0.8415 0.5128 31 1 6.0718 0.9383 0.5128 32 1 8.5033 3.6524 -2.5485 33 1 7.9296 -2.2419 -2.8606 34 1 7.0180 -1.6097 -4.2995 35 1 9.0657 -0.7422 -5.3295 36 1 9.8758 -2.0299 -4.3372 37 1 9.9425 0.7624 -3.6049 38 1 9.9903 -0.5692 -2.3706 39 1 1.6682 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = -80.729384 kcal Electronic energy + Delta-G solvation = -23846.090349 eV Core-core repulsion = 20333.600605 eV Total energy + Delta-G solvation = -3512.489744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.51722 -41.00860 -38.96398 -38.11968 -36.38798 -35.97969 -34.37726 -31.53334 -30.52362 -28.50269 -27.81057 -26.40651 -24.93025 -24.67747 -22.85409 -21.72181 -20.50589 -19.07081 -18.57499 -18.41418 -17.75850 -17.06700 -16.99278 -16.88311 -16.31817 -16.09656 -15.73250 -15.20236 -15.14813 -14.69280 -14.24896 -14.12209 -13.72026 -13.52656 -13.39893 -13.16842 -12.97900 -12.94669 -12.87385 -12.74287 -12.46728 -12.26426 -12.12980 -11.91193 -11.67984 -11.33681 -11.12224 -10.85389 -10.75030 -10.48203 -10.46039 -9.01746 -8.20044 -6.34721 -0.14167 0.89334 1.32907 1.36574 1.43169 1.46488 1.59817 2.23254 2.36115 2.72306 3.10873 3.62004 3.69968 3.85525 3.87125 3.96540 4.03214 4.10488 4.17015 4.29921 4.33108 4.38498 4.53222 4.77661 4.80728 4.85462 4.88267 4.89974 5.07746 5.09270 5.23222 5.32399 5.41318 5.46193 5.61745 5.64892 5.72176 5.92460 6.05215 6.41356 6.65698 6.93472 7.23098 7.36535 8.84286 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.005552 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.567933 B = 5041.564472 C = 5980.033807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.034 3.966 3 C -0.224 4.224 4 C 0.132 3.868 5 N -0.482 5.482 6 C 0.100 3.900 7 C 0.442 3.558 8 O -0.528 6.528 9 O -0.357 6.357 10 C 0.214 3.786 11 C -0.516 4.516 12 H 0.041 0.959 13 C 0.038 3.962 14 N -0.886 5.886 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.161 4.161 20 C -0.110 4.110 21 C -0.101 4.101 22 C 0.502 3.498 23 O -0.611 6.611 24 C -0.285 4.285 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.184 0.816 29 H 0.186 0.814 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.266 0.734 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.400 0.814 8.184 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 C -0.246 4.246 4 C 0.006 3.994 5 N -0.192 5.192 6 C -0.024 4.024 7 C 0.284 3.716 8 O -0.418 6.418 9 O -0.273 6.273 10 C 0.180 3.820 11 C -0.554 4.554 12 H 0.059 0.941 13 C -0.165 4.165 14 N -0.523 5.523 15 Si 0.772 3.228 16 H -0.204 1.204 17 H -0.197 1.197 18 H -0.199 1.199 19 C -0.199 4.199 20 C -0.147 4.147 21 C -0.139 4.139 22 C 0.308 3.692 23 O -0.499 6.499 24 C -0.306 4.306 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.201 0.799 29 H 0.203 0.797 30 H 0.150 0.850 31 H 0.180 0.820 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.005 0.313 7.915 12.761 hybrid contribution -0.162 0.529 -0.842 1.008 sum -10.167 0.843 7.073 12.414 Atomic orbital electron populations 1.21029 0.87308 1.04641 1.04578 1.20659 0.98808 0.91707 0.85820 1.21051 0.91762 1.00254 1.11580 1.22601 0.94771 0.89501 0.92490 1.45136 1.07385 1.07893 1.58803 1.21518 0.79016 1.09402 0.92442 1.23743 0.82495 0.73061 0.92288 1.90580 1.57713 1.45813 1.47651 1.86397 1.23543 1.81535 1.35825 1.21516 0.93239 0.91682 0.75515 1.20900 1.26866 0.91484 1.16100 0.94121 1.25595 0.94373 0.99884 0.96687 1.70092 1.36945 1.16959 1.28326 0.85741 0.78324 0.78989 0.79782 1.20390 1.19677 1.19939 1.23525 0.98478 0.98068 0.99780 1.22435 0.95858 0.98816 0.97594 1.22841 0.95000 0.98463 0.97628 1.17663 0.90592 0.82337 0.78657 1.90883 1.70342 1.32087 1.56592 1.21904 0.90905 1.01064 1.16754 0.87944 0.88866 0.90586 0.79885 0.79692 0.85005 0.81998 0.92429 0.91150 0.93999 0.90558 0.89022 0.92456 0.90849 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 10.03 71.23 0.71 -0.83 16 2 C 0.03 0.75 5.89 -19.82 -0.12 0.64 16 3 C -0.22 -4.61 9.71 22.08 0.21 -4.39 16 4 C 0.13 3.37 10.28 83.42 0.86 4.23 16 5 N -0.48 -16.22 2.07 -655.04 -1.36 -17.58 16 6 C 0.10 3.47 5.93 85.64 0.51 3.98 16 7 C 0.44 20.95 7.67 71.24 0.55 21.50 16 8 O -0.53 -28.62 14.75 21.99 0.32 -28.29 16 9 O -0.36 -18.11 9.93 -51.35 -0.51 -18.62 16 10 C 0.21 11.02 0.50 -11.01 -0.01 11.01 16 11 C -0.52 -28.92 6.30 25.60 0.16 -28.76 16 12 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 13 C 0.04 2.03 5.24 84.65 0.44 2.48 16 14 N -0.89 -48.09 12.54 21.45 0.27 -47.82 16 15 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.16 -7.43 7.28 31.12 0.23 -7.20 16 20 C -0.11 -4.38 7.81 31.12 0.24 -4.14 16 21 C -0.10 -4.63 7.19 31.12 0.22 -4.40 16 22 C 0.50 19.18 7.40 84.82 0.63 19.81 16 23 O -0.61 -28.43 16.64 -5.51 -0.09 -28.52 16 24 C -0.28 -8.58 9.65 22.40 0.22 -8.37 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 27 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 28 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 29 H 0.19 3.70 8.03 -2.91 -0.02 3.68 16 30 H 0.13 4.51 7.39 -2.39 -0.02 4.49 16 31 H 0.16 4.28 8.01 -2.39 -0.02 4.26 16 32 H 0.27 13.62 8.32 -92.71 -0.77 12.85 16 33 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.04 2.04 8.09 -2.39 -0.02 2.02 16 35 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.06 2.81 7.63 -2.39 -0.02 2.79 16 38 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -77.62 335.95 6.57 -71.05 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.05 Total: 19.10 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 4.86 Total: 5.54 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.09 Total: -65.40 kcal Atomic # 8 Polarization: -75.15 SS G_CDS: -0.28 Total: -75.43 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -77.62 6.57 -71.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.674 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds