Wall clock time and date at job start Tue Mar 31 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38392 * 119.42899 * 2 1 4 4 C 1.38289 * 119.33886 * 179.72119 * 3 2 1 5 5 C 1.40289 * 118.25527 * 0.51795 * 4 3 2 6 6 C 1.47175 * 120.58029 * 179.75744 * 5 4 3 7 7 C 1.34919 * 119.99917 * 179.72705 * 6 5 4 8 8 C 1.46233 * 119.99793 * 179.97438 * 7 6 5 9 9 O 1.21621 * 120.00229 * 359.97438 * 8 7 6 10 10 O 1.34907 * 119.99579 * 179.97438 * 8 7 6 11 11 C 1.42905 * 117.00058 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47264 * 180.02562 * 11 10 8 13 13 O 1.42899 * 109.47457 * 64.99865 * 12 11 10 14 14 C 1.42897 * 114.00314 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47146 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00057 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00216 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00376 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46831 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47315 * 119.99780 * 19 17 15 22 22 H 1.48502 * 109.47059 * 239.99984 * 19 17 15 23 23 C 1.39812 * 118.83075 * 359.48849 * 5 4 3 24 24 N 1.31652 * 120.52428 * 0.24426 * 23 5 4 25 25 H 1.08998 * 109.47287 * 270.02013 * 1 2 3 26 26 H 1.09004 * 109.46856 * 30.01918 * 1 2 3 27 27 H 1.08997 * 109.47219 * 150.02137 * 1 2 3 28 28 H 1.08007 * 120.33635 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.87451 * 180.30026 * 4 3 2 30 30 H 1.08004 * 120.00496 * 359.72012 * 6 5 4 31 31 H 1.07995 * 119.99880 * 359.97438 * 7 6 5 32 32 H 1.09001 * 109.47103 * 300.00387 * 11 10 8 33 33 H 1.09004 * 109.47054 * 59.99891 * 11 10 8 34 34 H 1.09004 * 109.46881 * 185.00370 * 12 11 10 35 35 H 1.09002 * 109.47196 * 304.99885 * 12 11 10 36 36 H 1.08999 * 109.46966 * 300.00604 * 14 13 12 37 37 H 1.09004 * 109.46572 * 60.00010 * 14 13 12 38 38 H 0.96998 * 120.00659 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.73474 * 180.27469 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2053 0.0000 4 6 3.5699 1.2032 0.0059 5 6 4.2321 -0.0336 0.0005 6 6 5.7025 -0.0955 0.0009 7 6 6.3273 -1.2914 0.0013 8 6 7.7883 -1.3529 0.0012 9 8 8.4403 -0.3262 0.0003 10 8 8.4130 -2.5486 0.0020 11 6 9.8420 -2.5341 0.0013 12 6 10.3667 -3.9713 0.0018 13 8 9.9946 -4.6147 -1.2187 14 6 10.4387 -5.9691 -1.3207 15 6 9.9938 -6.5456 -2.6400 16 1 9.4287 -5.9384 -3.3316 17 6 10.3081 -7.8483 -2.9641 18 7 10.9966 -8.5877 -2.1221 19 14 9.7571 -8.5629 -4.5998 20 1 9.0037 -7.5341 -5.3607 21 1 10.9471 -8.9848 -5.3816 22 1 8.8822 -9.7380 -4.3571 23 6 3.4706 -1.2061 0.0004 24 7 2.1553 -1.1492 0.0004 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6431 2.1385 -0.0004 29 1 4.1255 2.1292 0.0109 30 1 6.2815 0.8162 0.0009 31 1 5.7484 -2.2030 0.0016 32 1 10.1996 -2.0174 -0.8893 33 1 10.2005 -2.0157 0.8906 34 1 11.4530 -3.9614 0.0909 35 1 9.9380 -4.5143 0.8441 36 1 11.5265 -6.0003 -1.2592 37 1 10.0119 -6.5537 -0.5057 38 1 11.2181 -9.5041 -2.3503 39 1 3.9653 -2.1661 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815235286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:43 Heat of formation + Delta-G solvation = -90.455466 kcal Electronic energy + Delta-G solvation = -21109.341348 eV Core-core repulsion = 17596.429849 eV Total energy + Delta-G solvation = -3512.911499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.69935 -40.25972 -37.23007 -36.17648 -35.18746 -32.80874 -32.76189 -31.93763 -30.12563 -27.92274 -26.90150 -24.83001 -23.85727 -22.50169 -22.23194 -21.53705 -19.85913 -18.22078 -17.06119 -16.63690 -16.53581 -16.42049 -15.85539 -15.56535 -15.28690 -14.89807 -14.61887 -14.32102 -14.09997 -13.72365 -13.44492 -13.11842 -12.93407 -12.83211 -12.62919 -12.30682 -12.16188 -11.89018 -11.43241 -11.03253 -10.92142 -10.87191 -10.75020 -10.49400 -10.33204 -10.06811 -10.03808 -9.83760 -9.10833 -8.87490 -8.73946 -8.20826 -6.11482 -4.13008 -0.03108 0.84175 1.47283 2.79762 2.89944 3.29756 3.36175 3.43005 3.45284 3.85483 4.25711 4.32206 4.33984 4.42665 4.49597 4.73265 4.82144 4.91355 5.00697 5.13138 5.17458 5.24062 5.25200 5.30752 5.47289 5.53908 5.59022 5.63988 5.82109 5.88282 5.99674 6.00536 6.11726 6.26231 6.57803 7.06097 7.40408 7.57327 7.78852 7.83691 8.13118 8.53073 9.00016 9.51833 11.00119 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.002557 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.285491 B =10948.910195 C =12404.204400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.135 3.865 3 C -0.176 4.176 4 C -0.048 4.048 5 C -0.134 4.134 6 C -0.015 4.015 7 C -0.175 4.175 8 C 0.495 3.505 9 O -0.519 6.519 10 O -0.330 6.330 11 C 0.073 3.927 12 C 0.062 3.938 13 O -0.391 6.391 14 C 0.194 3.806 15 C -0.514 4.514 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.129 3.871 24 N -0.484 5.484 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.264 0.736 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 20.488 7.521 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.002 4.002 3 C -0.195 4.195 4 C -0.073 4.073 5 C -0.136 4.136 6 C -0.035 4.035 7 C -0.194 4.194 8 C 0.342 3.658 9 O -0.411 6.411 10 O -0.245 6.245 11 C -0.001 4.001 12 C -0.016 4.016 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.029 4.029 24 N -0.193 5.193 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.199 19.888 7.388 27.311 hybrid contribution 0.754 0.174 -0.553 0.951 sum -16.445 20.062 6.835 26.826 Atomic orbital electron populations 1.20775 0.88608 1.03767 1.03313 1.21532 0.97343 0.88356 0.92942 1.21922 0.94675 0.99446 1.03505 1.21825 0.94405 0.97552 0.93559 1.19945 0.93654 0.94816 1.05146 1.22235 0.91600 0.98466 0.91158 1.22286 0.90850 0.99781 1.06442 1.21173 0.89753 0.81832 0.73079 1.90851 1.68090 1.35508 1.46635 1.86291 1.23395 1.31869 1.82931 1.22854 0.76510 0.98324 1.02452 1.22326 0.97876 0.90849 0.90517 1.87916 1.78707 1.29558 1.34895 1.20247 0.94035 0.76195 0.97568 1.21086 1.35093 0.96990 1.02008 0.91455 1.24957 0.95157 0.96571 0.97879 1.69970 1.39059 1.08847 1.35940 0.86274 0.78393 0.78936 0.82860 1.19449 1.20847 1.20802 1.23264 0.89083 0.98217 0.92365 1.67548 1.09835 1.29096 1.12793 0.90112 0.90533 0.90156 0.84358 0.84101 0.84179 0.83764 0.90670 0.90637 0.91958 0.93169 0.97599 0.97460 0.92688 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 2 C 0.14 1.13 6.78 -82.49 -0.56 0.57 16 3 C -0.18 -1.19 9.72 -39.51 -0.38 -1.57 16 4 C -0.05 -0.35 9.95 -38.79 -0.39 -0.73 16 5 C -0.13 -1.19 5.88 -104.91 -0.62 -1.81 16 6 C -0.02 -0.15 9.48 -37.13 -0.35 -0.50 16 7 C -0.17 -1.98 9.55 -37.55 -0.36 -2.34 16 8 C 0.49 7.38 7.87 33.94 0.27 7.64 16 9 O -0.52 -8.55 16.00 -19.36 -0.31 -8.86 16 10 O -0.33 -5.58 10.09 -44.17 -0.45 -6.02 16 11 C 0.07 1.18 5.76 37.16 0.21 1.39 16 12 C 0.06 1.15 6.32 37.16 0.23 1.38 16 13 O -0.39 -9.58 10.29 -40.08 -0.41 -9.99 16 14 C 0.19 5.34 5.69 36.00 0.20 5.54 16 15 C -0.51 -15.26 9.43 -34.44 -0.32 -15.59 16 16 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 19 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 C 0.13 1.26 10.59 -17.04 -0.18 1.08 16 24 N -0.48 -5.12 10.25 -9.06 -0.09 -5.22 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 29 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 30 H 0.14 1.26 7.52 -52.48 -0.39 0.86 16 31 H 0.14 1.40 6.10 -52.49 -0.32 1.08 16 32 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.17 1.40 6.19 -52.49 -0.32 1.08 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -34.94 348.65 -7.49 -42.44 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -5.23 Total: -4.72 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.97 Total: -3.63 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.64 Total: -31.44 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.17 Total: -24.87 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.94 -7.49 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.017 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds