Wall clock time and date at job start Tue Mar 31 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38392 * 119.42899 * 2 1 4 4 C 1.38289 * 119.33886 * 179.72119 * 3 2 1 5 5 C 1.40289 * 118.25527 * 0.51795 * 4 3 2 6 6 C 1.47175 * 120.58029 * 179.75744 * 5 4 3 7 7 C 1.34919 * 119.99917 * 179.72705 * 6 5 4 8 8 C 1.46233 * 119.99793 * 179.97438 * 7 6 5 9 9 O 1.21621 * 120.00229 * 359.97438 * 8 7 6 10 10 O 1.34907 * 119.99579 * 179.97438 * 8 7 6 11 11 C 1.42905 * 117.00058 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47264 * 180.02562 * 11 10 8 13 13 O 1.42899 * 109.47457 * 64.99865 * 12 11 10 14 14 C 1.42897 * 114.00314 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47146 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00057 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00216 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00376 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46831 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47315 * 119.99780 * 19 17 15 22 22 H 1.48502 * 109.47059 * 239.99984 * 19 17 15 23 23 C 1.39812 * 118.83075 * 359.48849 * 5 4 3 24 24 N 1.31652 * 120.52428 * 0.24426 * 23 5 4 25 25 H 1.08998 * 109.47287 * 270.02013 * 1 2 3 26 26 H 1.09004 * 109.46856 * 30.01918 * 1 2 3 27 27 H 1.08997 * 109.47219 * 150.02137 * 1 2 3 28 28 H 1.08007 * 120.33635 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.87451 * 180.30026 * 4 3 2 30 30 H 1.08004 * 120.00496 * 359.72012 * 6 5 4 31 31 H 1.07995 * 119.99880 * 359.97438 * 7 6 5 32 32 H 1.09001 * 109.47103 * 300.00387 * 11 10 8 33 33 H 1.09004 * 109.47054 * 59.99891 * 11 10 8 34 34 H 1.09004 * 109.46881 * 185.00370 * 12 11 10 35 35 H 1.09002 * 109.47196 * 304.99885 * 12 11 10 36 36 H 1.08999 * 109.46966 * 300.00604 * 14 13 12 37 37 H 1.09004 * 109.46572 * 60.00010 * 14 13 12 38 38 H 0.96998 * 120.00659 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.73474 * 180.27469 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2053 0.0000 4 6 3.5699 1.2032 0.0059 5 6 4.2321 -0.0336 0.0005 6 6 5.7025 -0.0955 0.0009 7 6 6.3273 -1.2914 0.0013 8 6 7.7883 -1.3529 0.0012 9 8 8.4403 -0.3262 0.0003 10 8 8.4130 -2.5486 0.0020 11 6 9.8420 -2.5341 0.0013 12 6 10.3667 -3.9713 0.0018 13 8 9.9946 -4.6147 -1.2187 14 6 10.4387 -5.9691 -1.3207 15 6 9.9938 -6.5456 -2.6400 16 1 9.4287 -5.9384 -3.3316 17 6 10.3081 -7.8483 -2.9641 18 7 10.9966 -8.5877 -2.1221 19 14 9.7571 -8.5629 -4.5998 20 1 9.0037 -7.5341 -5.3607 21 1 10.9471 -8.9848 -5.3816 22 1 8.8822 -9.7380 -4.3571 23 6 3.4706 -1.2061 0.0004 24 7 2.1553 -1.1492 0.0004 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6431 2.1385 -0.0004 29 1 4.1255 2.1292 0.0109 30 1 6.2815 0.8162 0.0009 31 1 5.7484 -2.2030 0.0016 32 1 10.1996 -2.0174 -0.8893 33 1 10.2005 -2.0157 0.8906 34 1 11.4530 -3.9614 0.0909 35 1 9.9380 -4.5143 0.8441 36 1 11.5265 -6.0003 -1.2592 37 1 10.0119 -6.5537 -0.5057 38 1 11.2181 -9.5041 -2.3503 39 1 3.9653 -2.1661 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815235286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:42 Heat of formation + Delta-G solvation = -112.029816 kcal Electronic energy + Delta-G solvation = -21110.276882 eV Core-core repulsion = 17596.429849 eV Total energy + Delta-G solvation = -3513.847033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61486 -41.17518 -38.82414 -37.64469 -35.97801 -34.95355 -33.41154 -32.66905 -31.60303 -29.15394 -28.45044 -25.66513 -24.72737 -24.47626 -23.41971 -22.53967 -20.77924 -19.24069 -18.70779 -17.99919 -17.94956 -17.26556 -17.04972 -16.83170 -16.40314 -16.19847 -16.13249 -15.49095 -15.26818 -14.69799 -14.49343 -14.28676 -14.00498 -13.77049 -13.50420 -13.32994 -13.13008 -13.03888 -12.91708 -12.76026 -12.70672 -12.44151 -12.03310 -11.77185 -11.70259 -11.66820 -11.27287 -10.91028 -10.67060 -10.48006 -10.28229 -9.45631 -8.33312 -6.45393 -0.79286 0.25133 0.66115 1.39890 1.41234 1.56024 1.69677 1.89610 2.34037 2.80151 3.00506 3.05501 3.25617 3.51068 3.70751 3.80723 3.91127 3.93008 4.04204 4.10275 4.16094 4.37356 4.41164 4.49250 4.64356 4.69976 4.74972 4.79688 4.84612 4.88417 5.05404 5.15474 5.16245 5.18585 5.30901 5.39229 5.53670 5.68676 5.94167 6.48740 6.67204 6.78936 6.94143 7.26210 8.79117 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.002557 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.285491 B =10948.910195 C =12404.204400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.123 3.877 3 C -0.172 4.172 4 C -0.042 4.042 5 C -0.150 4.150 6 C 0.020 3.980 7 C -0.204 4.204 8 C 0.495 3.505 9 O -0.541 6.541 10 O -0.351 6.351 11 C 0.077 3.923 12 C 0.053 3.947 13 O -0.410 6.410 14 C 0.207 3.793 15 C -0.549 4.549 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.270 1.270 23 C 0.115 3.885 24 N -0.518 5.518 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.056 0.944 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.271 0.729 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.408 22.118 7.048 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.014 4.014 3 C -0.192 4.192 4 C -0.067 4.067 5 C -0.153 4.153 6 C 0.001 3.999 7 C -0.223 4.223 8 C 0.344 3.656 9 O -0.434 6.434 10 O -0.267 6.267 11 C 0.003 3.997 12 C -0.023 4.023 13 O -0.330 6.330 14 C 0.132 3.868 15 C -0.587 4.587 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.043 4.043 24 N -0.228 5.228 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.190 0.810 29 H 0.188 0.812 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.080 0.920 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.705 21.531 6.935 29.352 hybrid contribution 1.103 -0.198 -0.319 1.165 sum -17.602 21.333 6.616 28.437 Atomic orbital electron populations 1.20872 0.86823 1.04521 1.04146 1.22126 0.98766 0.88476 0.91982 1.22301 0.94646 1.00180 1.02042 1.22232 0.94946 0.97819 0.91744 1.19950 0.93043 0.95517 1.06746 1.22364 0.92030 0.98006 0.87507 1.22219 0.88893 1.01096 1.10055 1.21678 0.90824 0.80884 0.72194 1.90824 1.68739 1.35737 1.48140 1.86280 1.23645 1.33343 1.83428 1.22816 0.76675 0.96584 1.03655 1.22661 0.99447 0.91834 0.88388 1.87861 1.79029 1.28066 1.38033 1.19886 0.92893 0.77654 0.96349 1.21403 1.36245 0.98017 1.03007 0.92273 1.25952 0.94660 0.96585 1.02005 1.70064 1.39386 1.09445 1.37929 0.85137 0.78404 0.78171 0.77697 1.19016 1.19514 1.19554 1.23388 0.89324 0.98866 0.92709 1.67558 1.10219 1.30725 1.14273 0.89116 0.88040 0.91148 0.80955 0.81232 0.83289 0.82931 0.91286 0.87515 0.89974 0.92537 0.98919 0.99232 0.91970 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.16 71.24 0.72 -0.23 16 2 C 0.12 1.85 6.78 42.58 0.29 2.14 16 3 C -0.17 -1.81 9.72 22.32 0.22 -1.59 16 4 C -0.04 -0.49 9.95 22.78 0.23 -0.27 16 5 C -0.15 -2.49 5.88 -20.05 -0.12 -2.61 16 6 C 0.02 0.36 9.48 23.86 0.23 0.59 16 7 C -0.20 -4.64 9.55 23.59 0.23 -4.41 16 8 C 0.50 14.89 7.87 69.90 0.55 15.44 16 9 O -0.54 -17.71 16.00 19.44 0.31 -17.40 16 10 O -0.35 -12.07 10.09 -55.24 -0.56 -12.63 16 11 C 0.08 2.47 5.76 71.98 0.41 2.88 16 12 C 0.05 1.99 6.32 71.98 0.45 2.45 16 13 O -0.41 -20.61 10.29 -144.35 -1.49 -22.10 16 14 C 0.21 11.78 5.69 71.23 0.41 12.19 16 15 C -0.55 -33.32 9.43 25.60 0.24 -33.08 16 16 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 17 C 0.01 0.38 5.46 84.65 0.46 0.84 16 18 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 19 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.11 2.24 10.59 85.10 0.90 3.15 16 24 N -0.52 -10.80 10.25 -182.57 -1.87 -12.67 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.39 8.07 -2.38 -0.02 0.37 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 29 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.15 2.42 7.52 -2.91 -0.02 2.40 16 31 H 0.15 3.10 6.10 -2.91 -0.02 3.08 16 32 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.11 2.76 8.13 -2.38 -0.02 2.74 16 34 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.17 2.96 6.19 -2.91 -0.02 2.95 16 Total: -1.00 -76.20 348.65 4.98 -71.22 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.05 Total: 4.92 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.22 Total: -2.52 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -1.59 Total: -68.45 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.73 Total: -52.13 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.20 4.98 -71.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.810 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds