Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38396 * 119.43361 * 2 1 4 4 C 1.38278 * 119.33758 * 179.74456 * 3 2 1 5 5 C 1.40284 * 118.26579 * 0.47533 * 4 3 2 6 6 C 1.47180 * 120.58764 * 179.80278 * 5 4 3 7 7 C 1.34909 * 119.99862 * 316.29236 * 6 5 4 8 8 C 1.46223 * 120.00201 * 349.09377 * 7 6 5 9 9 O 1.21625 * 120.00215 * 353.22420 * 8 7 6 10 10 O 1.34908 * 120.00082 * 172.95003 * 8 7 6 11 11 C 1.42896 * 117.00103 * 180.27395 * 10 8 7 12 12 C 1.53002 * 109.47340 * 179.97438 * 11 10 8 13 13 O 1.42902 * 109.46915 * 65.00020 * 12 11 10 14 14 C 1.42903 * 113.99831 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47235 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99986 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00126 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00099 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47046 * 89.99951 * 19 17 15 21 21 H 1.48504 * 109.47066 * 209.99902 * 19 17 15 22 22 H 1.48499 * 109.46749 * 329.99424 * 19 17 15 23 23 C 1.39816 * 118.82634 * 359.52538 * 5 4 3 24 24 N 1.31661 * 120.52160 * 0.23608 * 23 5 4 25 25 H 1.08994 * 109.47194 * 270.02393 * 1 2 3 26 26 H 1.09004 * 109.46933 * 30.02169 * 1 2 3 27 27 H 1.08999 * 109.47349 * 150.01673 * 1 2 3 28 28 H 1.08002 * 120.32734 * 0.02562 * 3 2 1 29 29 H 1.08007 * 120.86845 * 180.27943 * 4 3 2 30 30 H 1.08003 * 119.99812 * 136.28794 * 6 5 4 31 31 H 1.08001 * 119.99316 * 169.09582 * 7 6 5 32 32 H 1.09002 * 109.47362 * 300.00139 * 11 10 8 33 33 H 1.09004 * 109.47217 * 59.99704 * 11 10 8 34 34 H 1.08994 * 109.47420 * 185.00034 * 12 11 10 35 35 H 1.09000 * 109.47131 * 305.00207 * 12 11 10 36 36 H 1.09006 * 109.46980 * 299.99901 * 14 13 12 37 37 H 1.08995 * 109.47409 * 59.99661 * 14 13 12 38 38 H 0.97000 * 120.00175 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.73847 * 180.25224 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2053 0.0000 4 6 3.5699 1.2030 0.0054 5 6 4.2322 -0.0336 0.0004 6 6 5.7027 -0.0957 0.0014 7 6 6.4129 0.7233 -0.8016 8 6 5.7344 1.4989 -1.8391 9 8 4.5526 1.3153 -2.0606 10 8 6.4178 2.4219 -2.5468 11 6 5.6905 3.1469 -3.5404 12 6 6.6250 4.1409 -4.2328 13 8 7.6341 3.4264 -4.9492 14 6 8.5648 4.2662 -5.6353 15 6 9.5786 3.4120 -6.3519 16 1 9.5185 2.3354 -6.2893 17 6 10.5828 4.0047 -7.0875 18 7 11.4672 3.2593 -7.7134 19 14 10.6871 5.8667 -7.1953 20 1 11.5344 6.3799 -6.0890 21 1 11.2856 6.2544 -8.4979 22 1 9.3242 6.4460 -7.0848 23 6 3.4706 -1.2062 0.0004 24 7 2.1553 -1.1492 0.0004 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6432 2.1384 0.0004 29 1 4.1256 2.1292 0.0100 30 1 6.2131 -0.7968 0.6451 31 1 7.4826 0.8060 -0.6782 32 1 5.2895 2.4509 -4.2772 33 1 4.8706 3.6880 -3.0680 34 1 6.0521 4.7549 -4.9276 35 1 7.0941 4.7801 -3.4848 36 1 8.0322 4.8831 -6.3592 37 1 9.0740 4.9077 -4.9162 38 1 12.1740 3.6763 -8.2306 39 1 3.9653 -2.1663 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815235287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -72.081643 kcal Electronic energy + Delta-G solvation = -21896.616158 eV Core-core repulsion = 18384.501408 eV Total energy + Delta-G solvation = -3512.114750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86177 -39.97299 -37.44418 -36.40882 -34.73403 -32.72203 -32.50372 -31.78984 -30.31831 -27.99155 -27.50358 -24.53425 -23.67344 -22.54193 -21.93236 -21.69942 -19.76369 -18.11666 -17.12114 -16.77864 -16.70077 -16.55890 -15.95152 -15.31928 -14.99787 -14.87958 -14.65909 -14.33382 -14.15971 -13.56616 -13.46855 -13.08824 -12.94414 -12.67916 -12.54316 -12.44950 -12.34932 -11.93162 -11.75784 -11.19766 -10.95494 -10.81862 -10.64592 -10.47321 -10.31280 -9.89660 -9.60979 -9.48475 -9.23188 -8.93755 -8.58496 -8.53243 -6.14182 -4.13682 0.25157 1.11814 1.48420 2.76911 2.89337 3.22226 3.29194 3.29953 3.62435 4.07883 4.32364 4.41736 4.43890 4.51799 4.64393 4.72382 4.89689 5.07116 5.11156 5.16733 5.28149 5.29988 5.33216 5.35568 5.47131 5.63437 5.67259 5.71677 5.76623 5.83620 5.93350 5.97550 6.13482 6.51247 6.52596 6.52876 6.93821 7.54779 7.79537 7.82055 7.93274 8.60920 8.97071 9.44356 10.98784 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.002570 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.271817 B =10892.164671 C =11265.785116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.135 3.865 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.136 4.136 6 C -0.014 4.014 7 C -0.178 4.178 8 C 0.486 3.514 9 O -0.506 6.506 10 O -0.331 6.331 11 C 0.074 3.926 12 C 0.058 3.942 13 O -0.375 6.375 14 C 0.168 3.832 15 C -0.520 4.520 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.124 3.876 24 N -0.494 5.494 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.267 0.733 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.915 -3.201 19.466 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.002 4.002 3 C -0.201 4.201 4 C -0.024 4.024 5 C -0.138 4.138 6 C -0.033 4.033 7 C -0.197 4.197 8 C 0.333 3.667 9 O -0.397 6.397 10 O -0.247 6.247 11 C 0.000 4.000 12 C -0.020 4.020 13 O -0.295 6.295 14 C 0.093 3.907 15 C -0.558 4.558 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.033 4.033 24 N -0.204 5.204 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.077 0.923 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.560 -4.178 19.218 27.042 hybrid contribution 0.760 2.174 -0.404 2.338 sum -17.801 -2.004 18.814 25.978 Atomic orbital electron populations 1.20726 0.89026 1.03522 1.02899 1.21334 0.96921 0.88374 0.93589 1.21741 0.94621 0.99140 1.04575 1.21491 0.94171 0.96882 0.89881 1.19906 0.93942 0.94852 1.05098 1.22395 0.91757 0.94229 0.94950 1.22431 1.01757 0.99137 0.96409 1.21470 0.85258 0.78344 0.81624 1.90920 1.16358 1.65626 1.66839 1.86300 1.43480 1.47818 1.47079 1.22774 0.93840 0.94415 0.89010 1.22399 0.91347 0.93258 0.94947 1.87982 1.40881 1.33837 1.66757 1.20636 0.87902 0.91437 0.90694 1.20874 1.09465 0.95883 1.29559 0.89928 1.24774 0.95073 0.98245 0.94901 1.69875 1.15646 1.35394 1.32338 0.86839 0.78834 0.85964 0.78031 1.19879 1.20737 1.19133 1.22840 0.89098 0.97259 0.94069 1.67427 1.09831 1.29069 1.14048 0.90465 0.90731 0.90473 0.85012 0.85821 0.83223 0.83042 0.90598 0.90701 0.91891 0.93076 0.97847 0.98168 0.92317 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.16 36.01 0.37 -0.42 16 2 C 0.14 1.47 6.78 -82.49 -0.56 0.91 16 3 C -0.18 -1.88 9.72 -39.51 -0.38 -2.26 16 4 C 0.00 0.02 6.73 -38.80 -0.26 -0.25 16 5 C -0.14 -1.45 4.55 -104.91 -0.48 -1.92 16 6 C -0.01 -0.12 9.84 -37.13 -0.37 -0.49 16 7 C -0.18 -1.85 10.06 -37.56 -0.38 -2.23 16 8 C 0.49 6.84 6.95 33.94 0.24 7.08 16 9 O -0.51 -7.79 11.90 -19.36 -0.23 -8.02 16 10 O -0.33 -5.32 10.09 -44.18 -0.45 -5.76 16 11 C 0.07 1.12 5.76 37.16 0.21 1.34 16 12 C 0.06 1.00 6.32 37.16 0.23 1.23 16 13 O -0.38 -8.79 10.29 -40.08 -0.41 -9.20 16 14 C 0.17 4.26 4.76 36.00 0.17 4.43 16 15 C -0.52 -15.51 9.99 -34.44 -0.34 -15.85 16 16 H 0.08 2.71 8.06 -52.48 -0.42 2.28 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -27.56 13.96 55.43 0.77 -26.78 16 19 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.78 16 23 C 0.12 1.34 10.97 -17.04 -0.19 1.15 16 24 N -0.49 -5.98 10.25 -9.06 -0.09 -6.08 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.29 7.10 -52.48 -0.37 0.92 16 30 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 37 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -35.46 340.13 -7.16 -42.61 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.38 Total: -3.17 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.83 Total: -5.27 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.68 Total: -32.86 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.09 Total: -22.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.46 -7.16 -42.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.467 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds