Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38396 * 119.43361 * 2 1 4 4 C 1.38278 * 119.33758 * 179.74456 * 3 2 1 5 5 C 1.40284 * 118.26579 * 0.47533 * 4 3 2 6 6 C 1.47180 * 120.58764 * 179.80278 * 5 4 3 7 7 C 1.34909 * 119.99862 * 316.29236 * 6 5 4 8 8 C 1.46223 * 120.00201 * 349.09377 * 7 6 5 9 9 O 1.21625 * 120.00215 * 353.22420 * 8 7 6 10 10 O 1.34908 * 120.00082 * 172.95003 * 8 7 6 11 11 C 1.42896 * 117.00103 * 180.27395 * 10 8 7 12 12 C 1.53002 * 109.47340 * 179.97438 * 11 10 8 13 13 O 1.42902 * 109.46915 * 65.00020 * 12 11 10 14 14 C 1.42903 * 113.99831 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47235 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99986 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00126 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00099 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47046 * 89.99951 * 19 17 15 21 21 H 1.48504 * 109.47066 * 209.99902 * 19 17 15 22 22 H 1.48499 * 109.46749 * 329.99424 * 19 17 15 23 23 C 1.39816 * 118.82634 * 359.52538 * 5 4 3 24 24 N 1.31661 * 120.52160 * 0.23608 * 23 5 4 25 25 H 1.08994 * 109.47194 * 270.02393 * 1 2 3 26 26 H 1.09004 * 109.46933 * 30.02169 * 1 2 3 27 27 H 1.08999 * 109.47349 * 150.01673 * 1 2 3 28 28 H 1.08002 * 120.32734 * 0.02562 * 3 2 1 29 29 H 1.08007 * 120.86845 * 180.27943 * 4 3 2 30 30 H 1.08003 * 119.99812 * 136.28794 * 6 5 4 31 31 H 1.08001 * 119.99316 * 169.09582 * 7 6 5 32 32 H 1.09002 * 109.47362 * 300.00139 * 11 10 8 33 33 H 1.09004 * 109.47217 * 59.99704 * 11 10 8 34 34 H 1.08994 * 109.47420 * 185.00034 * 12 11 10 35 35 H 1.09000 * 109.47131 * 305.00207 * 12 11 10 36 36 H 1.09006 * 109.46980 * 299.99901 * 14 13 12 37 37 H 1.08995 * 109.47409 * 59.99661 * 14 13 12 38 38 H 0.97000 * 120.00175 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.73847 * 180.25224 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2053 0.0000 4 6 3.5699 1.2030 0.0054 5 6 4.2322 -0.0336 0.0004 6 6 5.7027 -0.0957 0.0014 7 6 6.4129 0.7233 -0.8016 8 6 5.7344 1.4989 -1.8391 9 8 4.5526 1.3153 -2.0606 10 8 6.4178 2.4219 -2.5468 11 6 5.6905 3.1469 -3.5404 12 6 6.6250 4.1409 -4.2328 13 8 7.6341 3.4264 -4.9492 14 6 8.5648 4.2662 -5.6353 15 6 9.5786 3.4120 -6.3519 16 1 9.5185 2.3354 -6.2893 17 6 10.5828 4.0047 -7.0875 18 7 11.4672 3.2593 -7.7134 19 14 10.6871 5.8667 -7.1953 20 1 11.5344 6.3799 -6.0890 21 1 11.2856 6.2544 -8.4979 22 1 9.3242 6.4460 -7.0848 23 6 3.4706 -1.2062 0.0004 24 7 2.1553 -1.1492 0.0004 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6432 2.1384 0.0004 29 1 4.1256 2.1292 0.0100 30 1 6.2131 -0.7968 0.6451 31 1 7.4826 0.8060 -0.6782 32 1 5.2895 2.4509 -4.2772 33 1 4.8706 3.6880 -3.0680 34 1 6.0521 4.7549 -4.9276 35 1 7.0941 4.7801 -3.4848 36 1 8.0322 4.8831 -6.3592 37 1 9.0740 4.9077 -4.9162 38 1 12.1740 3.6763 -8.2306 39 1 3.9653 -2.1663 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815235287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -95.389371 kcal Electronic energy + Delta-G solvation = -21897.626857 eV Core-core repulsion = 18384.501408 eV Total energy + Delta-G solvation = -3513.125449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.83335 -40.88224 -38.90334 -37.74044 -35.57828 -34.90223 -33.27403 -32.62413 -31.72568 -29.66188 -28.54524 -25.49417 -24.46055 -24.04267 -23.54687 -22.75460 -20.68165 -19.15524 -19.05848 -18.03602 -17.76469 -17.50947 -17.12133 -16.73699 -16.44033 -16.26579 -15.66018 -15.50770 -14.94321 -14.79276 -14.59820 -14.44122 -14.06434 -14.01348 -13.57669 -13.39450 -13.24832 -13.06640 -12.99448 -12.74868 -12.61959 -12.27512 -11.86645 -11.78253 -11.65101 -11.37699 -11.16951 -10.94351 -10.45348 -10.42113 -10.29403 -9.37752 -8.37952 -6.46741 -0.55550 0.31593 0.66571 1.33811 1.37508 1.48139 1.76578 1.93319 2.29334 2.83761 2.93355 2.94805 3.37896 3.66880 3.75532 3.82718 3.92173 3.93313 4.09385 4.13141 4.34462 4.37871 4.46796 4.54751 4.61654 4.66620 4.67803 4.76667 4.77880 4.97738 4.98805 5.01809 5.16633 5.21853 5.33890 5.41316 5.47188 5.77511 5.89847 6.56926 6.67796 6.74817 7.02831 7.17477 8.79285 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.002570 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.271817 B =10892.164671 C =11265.785116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.121 3.879 3 C -0.189 4.189 4 C -0.012 4.012 5 C -0.152 4.152 6 C 0.016 3.984 7 C -0.202 4.202 8 C 0.481 3.519 9 O -0.527 6.527 10 O -0.353 6.353 11 C 0.076 3.924 12 C 0.051 3.949 13 O -0.408 6.408 14 C 0.178 3.822 15 C -0.549 4.549 16 H 0.026 0.974 17 C 0.011 3.989 18 N -0.943 5.943 19 Si 0.959 3.041 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.242 1.242 23 C 0.114 3.886 24 N -0.520 5.520 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.193 0.807 31 H 0.168 0.832 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.018 0.982 37 H 0.016 0.984 38 H 0.273 0.727 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.726 -1.278 20.805 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.017 4.017 3 C -0.209 4.209 4 C -0.038 4.038 5 C -0.154 4.154 6 C -0.002 4.002 7 C -0.221 4.221 8 C 0.330 3.670 9 O -0.419 6.419 10 O -0.269 6.269 11 C 0.002 3.998 12 C -0.026 4.026 13 O -0.328 6.328 14 C 0.103 3.897 15 C -0.587 4.587 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.582 5.582 19 Si 0.780 3.220 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.165 1.165 23 C -0.043 4.043 24 N -0.230 5.230 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.210 0.790 31 H 0.186 0.814 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.395 -2.268 20.578 28.369 hybrid contribution 0.918 1.421 -0.762 1.856 sum -18.477 -0.847 19.816 27.107 Atomic orbital electron populations 1.20797 0.87059 1.04032 1.04029 1.21862 0.98451 0.88269 0.93072 1.22021 0.94686 0.99960 1.04242 1.21682 0.94739 0.97237 0.90111 1.20187 0.95162 0.94793 1.05281 1.22819 0.90697 0.93019 0.93693 1.22536 1.02581 1.00134 0.96835 1.22142 0.85228 0.77877 0.81780 1.90906 1.17165 1.66246 1.67608 1.86295 1.44453 1.48676 1.47465 1.22767 0.94025 0.94108 0.88929 1.22760 0.90487 0.93910 0.95437 1.87925 1.42080 1.35340 1.67448 1.20367 0.87581 0.90678 0.91073 1.21166 1.11974 0.94074 1.31455 0.95519 1.25902 0.93982 1.05101 0.93734 1.70040 1.16530 1.38481 1.33126 0.85559 0.80309 0.77460 0.78694 1.18259 1.19930 1.16526 1.23267 0.89030 0.98338 0.93620 1.67475 1.10604 1.29897 1.15015 0.88933 0.89204 0.90935 0.83089 0.85754 0.78995 0.81414 0.92237 0.87530 0.89359 0.91470 0.96435 0.96649 0.91756 0.80430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.16 71.24 0.72 -0.70 16 2 C 0.12 2.52 6.78 42.58 0.29 2.81 16 3 C -0.19 -3.77 9.72 22.32 0.22 -3.56 16 4 C -0.01 -0.26 6.73 22.78 0.15 -0.10 16 5 C -0.15 -3.06 4.55 -20.05 -0.09 -3.15 16 6 C 0.02 0.24 9.84 23.86 0.23 0.48 16 7 C -0.20 -3.97 10.06 23.58 0.24 -3.74 16 8 C 0.48 13.42 6.95 69.90 0.49 13.90 16 9 O -0.53 -16.14 11.90 19.43 0.23 -15.90 16 10 O -0.35 -11.27 10.09 -55.25 -0.56 -11.83 16 11 C 0.08 2.25 5.76 71.98 0.41 2.66 16 12 C 0.05 1.65 6.32 71.98 0.45 2.11 16 13 O -0.41 -19.14 10.29 -144.34 -1.49 -20.62 16 14 C 0.18 8.89 4.76 71.23 0.34 9.23 16 15 C -0.55 -33.70 9.99 25.60 0.26 -33.44 16 16 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 17 C 0.01 0.63 5.47 84.65 0.46 1.10 16 18 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16 19 Si 0.96 42.80 27.47 68.60 1.88 44.68 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 23 C 0.11 2.34 10.97 85.10 0.93 3.27 16 24 N -0.52 -12.28 10.25 -182.56 -1.87 -14.15 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 0.95 8.07 -2.39 -0.02 0.93 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.12 2.54 7.10 -2.91 -0.02 2.52 16 30 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 31 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 33 H 0.11 2.45 8.13 -2.38 -0.02 2.43 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.02 0.83 7.20 -2.38 -0.02 0.82 16 37 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 38 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -80.06 340.13 4.60 -75.46 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.99 Total: 10.70 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 5.11 Total: -9.13 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.57 Total: -73.35 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.81 Total: -48.36 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -80.06 4.60 -75.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.929 kcal (2) G-P(sol) polarization free energy of solvation -80.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds