Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38326 * 120.86916 * 2 1 4 4 C 1.38353 * 119.33908 * 180.27766 * 3 2 1 5 5 N 1.31970 * 121.14275 * 359.74785 * 4 3 2 6 6 C 1.31628 * 121.90761 * 359.97438 * 5 4 3 7 7 C 1.39851 * 120.52072 * 359.97438 * 6 5 4 8 8 C 1.47183 * 120.58727 * 180.02562 * 7 6 5 9 9 C 1.34914 * 119.99938 * 359.97438 * 8 7 6 10 10 C 1.46229 * 119.99743 * 179.97438 * 9 8 7 11 11 O 1.21619 * 120.00587 * 359.73053 * 10 9 8 12 12 O 1.34914 * 119.99743 * 179.97438 * 10 9 8 13 13 C 1.42891 * 116.99961 * 179.72908 * 12 10 9 14 14 C 1.53001 * 109.47338 * 180.02562 * 13 12 10 15 15 O 1.42901 * 109.47380 * 64.99530 * 14 13 12 16 16 C 1.42890 * 113.99970 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46945 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00065 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00110 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00040 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47404 * 59.99405 * 21 19 17 23 23 H 1.48502 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47114 * 299.99658 * 21 19 17 25 25 H 1.09007 * 109.47175 * 270.24588 * 1 2 3 26 26 H 1.09000 * 109.47258 * 30.24940 * 1 2 3 27 27 H 1.08996 * 109.47391 * 150.24555 * 1 2 3 28 28 H 1.08006 * 120.33312 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.42767 * 179.71831 * 4 3 2 30 30 H 1.07995 * 119.73969 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.99884 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.99722 * 0.02562 * 9 8 7 33 33 H 1.09002 * 109.47220 * 300.00032 * 13 12 10 34 34 H 1.08996 * 109.47672 * 59.99976 * 13 12 10 35 35 H 1.08996 * 109.47490 * 185.00023 * 14 13 12 36 36 H 1.09001 * 109.46967 * 304.99767 * 14 13 12 37 37 H 1.09001 * 109.47636 * 299.99547 * 16 15 14 38 38 H 1.09000 * 109.47498 * 60.00028 * 16 15 14 39 39 H 0.96993 * 120.00350 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1873 0.0000 4 6 3.5997 1.1504 -0.0058 5 7 4.2518 0.0031 -0.0064 6 6 3.6242 -1.1539 -0.0010 7 6 2.2265 -1.2038 0.0061 8 6 1.5232 -2.4967 0.0127 9 6 2.2273 -3.6475 0.0114 10 6 1.5285 -4.9320 0.0185 11 8 0.3127 -4.9630 0.0306 12 8 2.2325 -6.0829 0.0166 13 6 1.4850 -7.3007 0.0300 14 6 2.4474 -8.4900 0.0263 15 8 3.2018 -8.4962 1.2399 16 6 4.1363 -9.5727 1.3379 17 6 4.8717 -9.4816 2.6501 18 1 4.6481 -8.6814 3.3401 19 6 5.8308 -10.4193 2.9695 20 7 6.1036 -11.3935 2.1292 21 14 6.7428 -10.3059 4.5957 22 1 5.7710 -10.3910 5.7153 23 1 7.7140 -11.4247 4.6977 24 1 7.4683 -9.0121 4.6673 25 1 -0.3634 0.0044 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3634 -0.8921 -0.5100 28 1 1.6964 2.1338 0.0004 29 1 4.1552 2.0765 -0.0105 30 1 4.1929 -2.0720 -0.0013 31 1 0.4436 -2.5240 0.0187 32 1 3.3069 -3.6201 0.0059 33 1 0.8661 -7.3373 0.9265 34 1 0.8479 -7.3457 -0.8533 35 1 1.8794 -9.4169 -0.0532 36 1 3.1258 -8.4058 -0.8227 37 1 3.6037 -10.5222 1.2856 38 1 4.8497 -9.5105 0.5161 39 1 6.7780 -12.0533 2.3540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815241043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -89.761807 kcal Electronic energy + Delta-G solvation = -21332.118238 eV Core-core repulsion = 17819.236819 eV Total energy + Delta-G solvation = -3512.881419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73169 -40.25436 -37.22776 -36.17118 -35.17740 -33.87249 -32.76087 -30.74191 -29.88592 -28.22650 -26.96193 -25.48139 -23.31401 -22.44093 -22.20692 -21.54172 -19.85150 -18.17503 -17.10743 -16.86163 -16.54435 -16.44442 -15.82076 -15.55529 -15.28877 -14.75484 -14.62633 -14.32505 -14.30073 -13.76705 -13.32373 -13.19282 -13.14114 -12.99982 -12.71539 -12.25412 -11.89445 -11.88492 -11.43041 -11.10204 -10.93592 -10.85735 -10.76096 -10.50442 -10.33567 -10.04271 -9.82945 -9.82627 -9.13476 -8.86643 -8.82841 -8.20537 -6.11099 -4.12833 -0.03015 0.81357 1.48816 2.78672 2.90112 3.33208 3.35609 3.39752 3.47231 4.00638 4.20598 4.26648 4.33040 4.35679 4.47155 4.72990 4.81119 4.91918 4.99381 5.09072 5.12144 5.23531 5.25390 5.34263 5.36276 5.46999 5.57681 5.66150 5.84366 5.88328 5.99697 6.00859 6.11543 6.26765 6.56943 7.06012 7.40503 7.57175 7.78418 7.82700 8.13289 8.53191 8.99452 9.51845 11.00432 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002634 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.619009 B =10626.687563 C =11836.725214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.018 4.018 3 C -0.179 4.179 4 C 0.111 3.889 5 N -0.487 5.487 6 C 0.127 3.873 7 C -0.130 4.130 8 C -0.019 4.019 9 C -0.173 4.173 10 C 0.495 3.505 11 O -0.519 6.519 12 O -0.329 6.329 13 C 0.073 3.927 14 C 0.062 3.938 15 O -0.391 6.391 16 C 0.194 3.806 17 C -0.516 4.516 18 H 0.066 0.934 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.138 0.862 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 23.912 -7.477 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.026 4.026 3 C -0.198 4.198 4 C -0.045 4.045 5 N -0.196 5.196 6 C -0.031 4.031 7 C -0.132 4.132 8 C -0.038 4.038 9 C -0.192 4.192 10 C 0.342 3.658 11 O -0.411 6.411 12 O -0.245 6.245 13 C -0.001 4.001 14 C -0.016 4.016 15 O -0.311 6.311 16 C 0.120 3.880 17 C -0.554 4.554 18 H 0.084 0.916 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.736 3.264 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.076 23.841 -7.352 26.907 hybrid contribution -0.421 -0.408 0.583 0.827 sum -10.497 23.433 -6.769 26.554 Atomic orbital electron populations 1.20949 0.89831 1.03906 1.03528 1.20545 0.96887 0.92075 0.93050 1.22005 0.95625 0.98603 1.03604 1.22950 0.91728 0.96515 0.93328 1.67707 1.40990 0.98373 1.12511 1.23284 0.90743 0.96668 0.92407 1.19832 0.94755 0.93087 1.05494 1.22264 1.00461 0.89729 0.91330 1.22298 1.01475 0.89170 1.06230 1.21170 0.85898 0.85683 0.73087 1.90847 1.14994 1.88603 1.46622 1.86291 1.40813 1.14446 1.82904 1.22852 0.94139 0.80679 1.02467 1.22326 0.94257 0.94349 0.90640 1.87915 1.54736 1.52931 1.35496 1.20233 0.86317 0.83887 0.97524 1.21013 1.19855 1.11985 1.02527 0.91555 1.24949 0.96759 0.94951 0.97829 1.69947 1.33173 1.14596 1.36103 0.86379 0.79298 0.77686 0.83023 1.20025 1.21148 1.19942 0.89845 0.90557 0.90340 0.84382 0.82457 0.81755 0.84072 0.83733 0.90669 0.90633 0.91953 0.93165 0.97613 0.97472 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.60 36.00 0.35 -0.32 16 2 C -0.02 -0.14 5.96 -103.84 -0.62 -0.75 16 3 C -0.18 -1.18 9.80 -39.51 -0.39 -1.57 16 4 C 0.11 0.86 11.17 -17.45 -0.19 0.67 16 5 N -0.49 -5.08 10.34 -12.83 -0.13 -5.22 16 6 C 0.13 1.25 10.59 -17.04 -0.18 1.07 16 7 C -0.13 -1.18 5.88 -104.91 -0.62 -1.80 16 8 C -0.02 -0.18 8.94 -37.13 -0.33 -0.51 16 9 C -0.17 -1.96 9.55 -37.55 -0.36 -2.32 16 10 C 0.49 7.34 7.87 33.94 0.27 7.61 16 11 O -0.52 -8.46 16.00 -19.36 -0.31 -8.77 16 12 O -0.33 -5.55 10.09 -44.20 -0.45 -6.00 16 13 C 0.07 1.17 5.76 37.16 0.21 1.38 16 14 C 0.06 1.14 6.32 37.16 0.23 1.38 16 15 O -0.39 -9.56 10.29 -40.08 -0.41 -9.97 16 16 C 0.19 5.36 5.69 36.01 0.20 5.56 16 17 C -0.52 -15.32 9.43 -34.44 -0.32 -15.64 16 18 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 21 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 27 H 0.08 0.42 6.47 -51.93 -0.34 0.09 16 28 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 29 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.17 1.41 6.19 -52.49 -0.32 1.08 16 31 H 0.14 1.29 5.95 -52.48 -0.31 0.98 16 32 H 0.15 1.41 6.10 -52.49 -0.32 1.09 16 33 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 34 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -34.79 344.90 -7.30 -42.09 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -5.06 Total: -4.37 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.84 Total: -3.71 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.60 Total: -31.43 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -1.17 Total: -24.74 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.79 -7.30 -42.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.673 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds