Wall clock time and date at job start Tue Mar 31 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38326 * 120.86916 * 2 1 4 4 C 1.38353 * 119.33908 * 180.27766 * 3 2 1 5 5 N 1.31970 * 121.14275 * 359.74785 * 4 3 2 6 6 C 1.31628 * 121.90761 * 359.97438 * 5 4 3 7 7 C 1.39851 * 120.52072 * 359.97438 * 6 5 4 8 8 C 1.47183 * 120.58727 * 180.02562 * 7 6 5 9 9 C 1.34914 * 119.99938 * 359.97438 * 8 7 6 10 10 C 1.46229 * 119.99743 * 179.97438 * 9 8 7 11 11 O 1.21619 * 120.00587 * 359.73053 * 10 9 8 12 12 O 1.34914 * 119.99743 * 179.97438 * 10 9 8 13 13 C 1.42891 * 116.99961 * 179.72908 * 12 10 9 14 14 C 1.53001 * 109.47338 * 180.02562 * 13 12 10 15 15 O 1.42901 * 109.47380 * 64.99530 * 14 13 12 16 16 C 1.42890 * 113.99970 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46945 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00065 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00110 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00040 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47404 * 59.99405 * 21 19 17 23 23 H 1.48502 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47114 * 299.99658 * 21 19 17 25 25 H 1.09007 * 109.47175 * 270.24588 * 1 2 3 26 26 H 1.09000 * 109.47258 * 30.24940 * 1 2 3 27 27 H 1.08996 * 109.47391 * 150.24555 * 1 2 3 28 28 H 1.08006 * 120.33312 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.42767 * 179.71831 * 4 3 2 30 30 H 1.07995 * 119.73969 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.99884 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.99722 * 0.02562 * 9 8 7 33 33 H 1.09002 * 109.47220 * 300.00032 * 13 12 10 34 34 H 1.08996 * 109.47672 * 59.99976 * 13 12 10 35 35 H 1.08996 * 109.47490 * 185.00023 * 14 13 12 36 36 H 1.09001 * 109.46967 * 304.99767 * 14 13 12 37 37 H 1.09001 * 109.47636 * 299.99547 * 16 15 14 38 38 H 1.09000 * 109.47498 * 60.00028 * 16 15 14 39 39 H 0.96993 * 120.00350 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1873 0.0000 4 6 3.5997 1.1504 -0.0058 5 7 4.2518 0.0031 -0.0064 6 6 3.6242 -1.1539 -0.0010 7 6 2.2265 -1.2038 0.0061 8 6 1.5232 -2.4967 0.0127 9 6 2.2273 -3.6475 0.0114 10 6 1.5285 -4.9320 0.0185 11 8 0.3127 -4.9630 0.0306 12 8 2.2325 -6.0829 0.0166 13 6 1.4850 -7.3007 0.0300 14 6 2.4474 -8.4900 0.0263 15 8 3.2018 -8.4962 1.2399 16 6 4.1363 -9.5727 1.3379 17 6 4.8717 -9.4816 2.6501 18 1 4.6481 -8.6814 3.3401 19 6 5.8308 -10.4193 2.9695 20 7 6.1036 -11.3935 2.1292 21 14 6.7428 -10.3059 4.5957 22 1 5.7710 -10.3910 5.7153 23 1 7.7140 -11.4247 4.6977 24 1 7.4683 -9.0121 4.6673 25 1 -0.3634 0.0044 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3634 -0.8921 -0.5100 28 1 1.6964 2.1338 0.0004 29 1 4.1552 2.0765 -0.0105 30 1 4.1929 -2.0720 -0.0013 31 1 0.4436 -2.5240 0.0187 32 1 3.3069 -3.6201 0.0059 33 1 0.8661 -7.3373 0.9265 34 1 0.8479 -7.3457 -0.8533 35 1 1.8794 -9.4169 -0.0532 36 1 3.1258 -8.4058 -0.8227 37 1 3.6037 -10.5222 1.2856 38 1 4.8497 -9.5105 0.5161 39 1 6.7780 -12.0533 2.3540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815241043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:26 Heat of formation + Delta-G solvation = -111.202186 kcal Electronic energy + Delta-G solvation = -21333.047963 eV Core-core repulsion = 17819.236819 eV Total energy + Delta-G solvation = -3513.811144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.63902 -41.17984 -38.82183 -37.64112 -35.94367 -34.95127 -34.51564 -31.90275 -30.99221 -29.09009 -28.71735 -26.36654 -24.60523 -24.18725 -23.23774 -22.53745 -20.77073 -19.21027 -18.70347 -18.01737 -17.95863 -17.48307 -17.04877 -16.81594 -16.42582 -16.22016 -16.10319 -15.34250 -15.27565 -14.93031 -14.50710 -14.28143 -13.83933 -13.76949 -13.69695 -13.59836 -13.24130 -13.02958 -12.94321 -12.69704 -12.44252 -12.41343 -12.02730 -11.87159 -11.70924 -11.67351 -11.29796 -10.89812 -10.47602 -10.38716 -10.27948 -9.57413 -8.32743 -6.45059 -0.80036 0.21749 0.67084 1.40023 1.44718 1.53119 1.68515 1.89285 2.34214 2.82253 3.01046 3.05679 3.35340 3.53507 3.66829 3.74044 3.80809 3.92943 4.02754 4.10324 4.14605 4.40912 4.48538 4.49966 4.56505 4.63922 4.71281 4.76735 4.81462 4.84734 4.99040 5.11203 5.16813 5.23752 5.33209 5.39751 5.53514 5.68643 5.94422 6.48940 6.66280 6.78800 6.93827 7.26405 8.79276 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002634 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.619009 B =10626.687563 C =11836.725214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.017 4.017 3 C -0.174 4.174 4 C 0.106 3.894 5 N -0.521 5.521 6 C 0.114 3.886 7 C -0.149 4.149 8 C 0.014 3.986 9 C -0.201 4.201 10 C 0.496 3.504 11 O -0.540 6.540 12 O -0.350 6.350 13 C 0.077 3.923 14 C 0.053 3.947 15 O -0.409 6.409 16 C 0.208 3.792 17 C -0.552 4.552 18 H 0.060 0.940 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.982 3.018 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.266 1.266 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.173 0.827 29 H 0.184 0.816 30 H 0.165 0.835 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.056 0.944 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 26.053 -6.985 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.025 4.025 3 C -0.193 4.193 4 C -0.049 4.049 5 N -0.230 5.230 6 C -0.043 4.043 7 C -0.151 4.151 8 C -0.005 4.005 9 C -0.219 4.219 10 C 0.344 3.656 11 O -0.433 6.433 12 O -0.266 6.266 13 C 0.003 3.997 14 C -0.023 4.023 15 O -0.330 6.330 16 C 0.133 3.867 17 C -0.589 4.589 18 H 0.078 0.922 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.805 3.195 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.191 1.191 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.190 0.810 29 H 0.201 0.799 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.010 0.990 38 H 0.007 0.993 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.623 25.991 -6.879 28.909 hybrid contribution -0.325 -0.898 0.343 1.015 sum -10.948 25.093 -6.536 28.147 Atomic orbital electron populations 1.21040 0.88081 1.04874 1.04295 1.20919 0.98207 0.91754 0.91595 1.22371 0.95208 0.99648 1.02059 1.23507 0.92796 0.96640 0.92002 1.67713 1.42081 0.99225 1.13950 1.23392 0.91304 0.96911 0.92721 1.19846 0.94637 0.93378 1.07270 1.22384 1.00665 0.89541 0.87900 1.22231 1.01957 0.88049 1.09677 1.21653 0.85813 0.85875 0.72234 1.90821 1.15697 1.88743 1.48057 1.86279 1.41741 1.15220 1.83395 1.22817 0.93379 0.79858 1.03672 1.22661 0.94469 0.96668 0.88540 1.87859 1.54722 1.51788 1.38600 1.19871 0.86325 0.84204 0.96302 1.21360 1.21374 1.12645 1.03558 0.92203 1.25946 0.97191 0.94090 1.01896 1.70048 1.33585 1.15098 1.38068 0.85246 0.78053 0.78272 0.77924 1.19062 1.19819 1.19068 0.89034 0.88421 0.90611 0.81001 0.79896 0.81753 0.83414 0.82828 0.91262 0.87494 0.89969 0.92541 0.98953 0.99265 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.60 71.23 0.68 -0.30 16 2 C -0.02 -0.22 5.96 -19.36 -0.12 -0.34 16 3 C -0.17 -1.78 9.80 22.32 0.22 -1.57 16 4 C 0.11 1.44 11.17 84.70 0.95 2.39 16 5 N -0.52 -10.52 10.34 -194.50 -2.01 -12.53 16 6 C 0.11 2.23 10.59 85.11 0.90 3.14 16 7 C -0.15 -2.59 5.88 -20.05 -0.12 -2.71 16 8 C 0.01 0.27 8.94 23.86 0.21 0.48 16 9 C -0.20 -4.61 9.55 23.58 0.23 -4.39 16 10 C 0.50 14.88 7.87 69.90 0.55 15.43 16 11 O -0.54 -17.59 16.00 19.45 0.31 -17.27 16 12 O -0.35 -12.01 10.09 -55.32 -0.56 -12.57 16 13 C 0.08 2.46 5.76 71.98 0.41 2.87 16 14 C 0.05 1.98 6.32 71.98 0.45 2.44 16 15 O -0.41 -20.55 10.29 -144.34 -1.49 -22.03 16 16 C 0.21 11.81 5.69 71.24 0.41 12.22 16 17 C -0.55 -33.44 9.43 25.60 0.24 -33.20 16 18 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 19 C 0.01 0.44 5.46 84.66 0.46 0.90 16 20 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 21 Si 0.98 44.84 29.54 68.60 2.03 46.87 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.10 0.37 8.10 -2.39 -0.02 0.35 16 27 H 0.08 0.65 6.47 -2.39 -0.02 0.64 16 28 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 29 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.17 2.97 6.19 -2.91 -0.02 2.95 16 31 H 0.15 2.56 5.95 -2.91 -0.02 2.54 16 32 H 0.15 3.14 6.10 -2.91 -0.02 3.12 16 33 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 34 H 0.11 2.75 8.13 -2.39 -0.02 2.73 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -75.56 344.90 5.11 -70.45 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.06 Total: 5.52 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.48 Total: -2.64 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.73 Total: -68.32 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -1.73 Total: -51.87 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.56 5.11 -70.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.753 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds