Wall clock time and date at job start Tue Mar 31 2020 07:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 114.00342 * 2 1 4 4 C 1.50702 * 109.47223 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99965 * 260.85303 * 4 3 2 6 6 C 1.33020 * 119.99820 * 80.85711 * 4 3 2 7 7 C 1.47061 * 120.00291 * 353.00282 * 6 4 3 8 8 O 1.21625 * 119.99962 * 3.84934 * 7 6 4 9 9 N 1.34771 * 119.99897 * 183.84485 * 7 6 4 10 10 C 1.39837 * 119.99602 * 174.33512 * 9 7 6 11 11 C 1.38984 * 120.04259 * 329.08795 * 10 9 7 12 12 C 1.38150 * 120.06816 * 180.02562 * 11 10 9 13 13 C 1.38173 * 120.13775 * 359.72820 * 12 11 10 14 14 C 1.38916 * 120.07682 * 0.54869 * 13 12 11 15 15 O 1.35747 * 120.03210 * 179.72548 * 14 13 12 16 16 C 1.34829 * 116.99925 * 174.55185 * 15 14 13 17 17 H 1.08002 * 120.00256 * 5.07764 * 16 15 14 18 18 C 1.38649 * 120.00345 * 185.08076 * 16 15 14 19 19 N 1.31561 * 120.00565 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99756 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47056 * 89.99914 * 20 18 16 22 22 H 1.48503 * 109.46893 * 210.00429 * 20 18 16 23 23 H 1.48504 * 109.46738 * 329.99805 * 20 18 16 24 24 C 1.38735 * 120.03476 * 149.11080 * 10 9 7 25 25 H 1.08992 * 109.47480 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47504 * 300.00606 * 1 2 3 27 27 H 1.09010 * 109.47160 * 59.99927 * 1 2 3 28 28 H 1.08997 * 109.46971 * 59.99756 * 3 2 1 29 29 H 1.09002 * 109.46787 * 299.99767 * 3 2 1 30 30 H 1.08995 * 109.47201 * 270.00260 * 5 4 3 31 31 H 1.09008 * 109.47331 * 30.00523 * 5 4 3 32 32 H 1.09003 * 109.47380 * 149.99904 * 5 4 3 33 33 H 1.07999 * 119.99642 * 173.00681 * 6 4 3 34 34 H 0.96993 * 120.00443 * 354.34397 * 9 7 6 35 35 H 1.08004 * 119.96311 * 359.97438 * 11 10 9 36 36 H 1.07993 * 119.93105 * 179.97438 * 12 11 10 37 37 H 1.08004 * 119.96297 * 180.27398 * 13 12 11 38 38 H 0.96996 * 119.99931 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.07259 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2795 1.3339 1.2894 6 6 4.1615 0.9512 -1.1364 7 6 3.4092 0.6547 -2.3648 8 8 2.1936 0.6934 -2.3576 9 7 4.0668 0.3403 -3.4984 10 6 3.3530 -0.0567 -4.6334 11 6 2.1474 -0.7343 -4.4956 12 6 1.4421 -1.1272 -5.6166 13 6 1.9297 -0.8431 -6.8779 14 6 3.1369 -0.1712 -7.0225 15 8 3.6177 0.1026 -8.2621 16 6 4.7347 0.8544 -8.3331 17 1 5.2512 1.1409 -7.4289 18 6 5.2202 1.2600 -9.5669 19 7 6.3098 1.9941 -9.6361 20 14 4.3272 0.7640 -11.1309 21 1 3.3128 1.7942 -11.4695 22 1 5.3044 0.6470 -12.2429 23 1 3.6546 -0.5436 -10.9234 24 6 3.8478 0.2251 -5.8986 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 4.5446 2.3808 1.4366 31 1 3.6614 0.9952 2.1209 32 1 5.1873 0.7323 1.2429 33 1 5.2410 0.9778 -1.1575 34 1 5.0351 0.3892 -3.5269 35 1 1.7621 -0.9547 -3.5110 36 1 0.5058 -1.6540 -5.5069 37 1 1.3737 -1.1477 -7.7523 38 1 6.6491 2.2780 -10.4993 39 1 4.7843 0.7515 -6.0085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844338177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:39 Heat of formation + Delta-G solvation = -74.329630 kcal Electronic energy + Delta-G solvation = -22584.106679 eV Core-core repulsion = 19071.894449 eV Total energy + Delta-G solvation = -3512.212230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.65523 -40.55490 -38.98583 -38.04770 -35.83720 -35.52416 -34.40234 -31.22159 -30.64730 -28.76513 -28.56504 -27.17727 -26.30917 -24.04441 -23.42715 -21.77796 -20.36271 -19.64671 -19.18376 -18.22116 -17.38935 -17.26408 -16.91619 -16.65509 -16.36771 -16.04647 -15.76374 -15.60570 -15.33405 -14.79534 -14.71166 -14.42720 -14.19410 -14.04220 -13.92881 -13.46241 -13.23784 -12.92727 -12.74504 -12.72594 -12.47976 -12.42032 -12.12795 -12.04983 -11.49327 -11.28720 -10.91634 -10.80754 -10.29287 -10.21109 -9.38386 -8.88744 -8.49867 -6.22796 0.06221 0.55621 0.68017 1.32765 1.36779 1.53279 2.10563 2.19649 2.29122 2.79135 3.03183 3.09013 3.17505 3.66619 3.91768 4.07144 4.17036 4.31091 4.37185 4.42608 4.50211 4.56023 4.60579 4.65458 4.71025 4.76954 4.85497 4.87160 4.90862 5.04151 5.32185 5.34054 5.37275 5.49814 5.56746 5.63991 5.75527 5.90406 6.21622 6.28039 6.50550 6.84560 7.16084 7.57667 8.61433 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.003437 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.386538 B = 8145.237667 C = 9005.983248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.394 6.394 3 C 0.082 3.918 4 C -0.029 4.029 5 C -0.118 4.118 6 C -0.213 4.213 7 C 0.534 3.466 8 O -0.537 6.537 9 N -0.663 5.663 10 C 0.187 3.813 11 C -0.194 4.194 12 C -0.052 4.052 13 C -0.205 4.205 14 C 0.142 3.858 15 O -0.240 6.240 16 C -0.400 4.400 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.259 4.259 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.420 0.580 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.285 0.715 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -2.741 21.332 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.313 6.313 3 C 0.006 3.994 4 C -0.031 4.031 5 C -0.174 4.174 6 C -0.234 4.234 7 C 0.326 3.674 8 O -0.415 6.415 9 N -0.308 5.308 10 C 0.092 3.908 11 C -0.215 4.215 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.092 3.908 15 O -0.147 6.147 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.281 4.281 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.180 0.820 34 H 0.257 0.743 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.152 0.848 38 H 0.094 0.906 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.103 -2.830 21.064 22.408 hybrid contribution 0.520 0.488 -0.998 1.226 sum -6.583 -2.342 20.066 21.248 Atomic orbital electron populations 1.22752 0.80150 1.03145 1.00035 1.87847 1.20827 1.27227 1.95437 1.21698 0.90452 0.86150 1.01076 1.22714 0.94620 0.89859 0.95939 1.21041 1.00096 1.04285 0.92022 1.22573 1.01595 1.08204 0.91035 1.19283 0.87805 0.76256 0.84028 1.90742 1.14775 1.50974 1.85038 1.43479 1.11097 1.66356 1.09870 1.17510 0.93476 0.94581 0.85282 1.20962 0.96577 1.04108 0.99806 1.20970 0.99393 0.96720 0.89967 1.20529 0.95456 1.07255 0.99208 1.19325 0.93117 0.94282 0.84112 1.83545 1.41517 1.64410 1.25231 1.20703 1.01090 1.29677 0.96167 0.89987 1.25249 0.96559 0.95308 1.01527 1.69721 1.22536 1.36134 1.27824 0.85244 0.78439 0.79762 0.77463 1.19246 1.19196 1.18558 1.20890 1.04496 1.11289 0.91429 0.89084 0.92630 0.95077 0.91465 0.92250 0.88421 0.89968 0.89402 0.81961 0.74260 0.85025 0.82446 0.84823 0.90572 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 11.01 113.37 1.25 1.97 16 2 O -0.39 -10.15 9.60 -129.24 -1.24 -11.39 16 3 C 0.08 1.82 5.03 71.24 0.36 2.18 16 4 C -0.03 -0.55 5.74 -17.61 -0.10 -0.65 16 5 C -0.12 -1.22 10.00 71.23 0.71 -0.50 16 6 C -0.21 -4.45 9.62 23.42 0.23 -4.22 16 7 C 0.53 15.87 7.46 86.56 0.65 16.52 16 8 O -0.54 -18.71 9.90 15.63 0.15 -18.56 16 9 N -0.66 -20.60 5.34 -306.84 -1.64 -22.24 16 10 C 0.19 7.18 6.32 38.16 0.24 7.42 16 11 C -0.19 -7.10 8.66 22.43 0.19 -6.91 16 12 C -0.05 -1.78 10.03 22.23 0.22 -1.56 16 13 C -0.20 -8.15 9.99 22.42 0.22 -7.92 16 14 C 0.14 6.75 6.65 22.56 0.15 6.90 16 15 O -0.24 -13.06 8.58 -22.70 -0.19 -13.26 16 16 C -0.40 -23.47 9.94 67.92 0.68 -22.79 16 17 H 0.08 5.00 5.43 -2.91 -0.02 4.98 16 18 C 0.01 0.70 5.49 84.83 0.47 1.17 16 19 N -0.92 -54.60 13.96 21.61 0.30 -54.30 16 20 Si 0.97 45.32 28.62 68.60 1.96 47.29 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 24 C -0.26 -11.65 9.07 22.52 0.20 -11.44 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 29 H 0.06 1.63 6.09 -2.39 -0.01 1.62 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.76 8.12 -2.38 -0.02 0.74 16 32 H 0.09 0.72 8.07 -2.39 -0.02 0.70 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.42 10.64 8.79 -92.71 -0.82 9.83 16 35 H 0.13 4.76 6.24 -2.91 -0.02 4.74 16 36 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.12 5.67 5.63 -2.91 -0.02 5.65 16 Total: -1.00 -72.26 333.84 5.08 -67.18 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.26 Total: 25.12 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 5.47 Total: -19.85 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -1.34 Total: -76.54 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.28 Total: -43.20 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.96 Total: 47.29 kcal Total: -72.26 5.08 -67.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844338177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.147 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds