Wall clock time and date at job start Tue Mar 31 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50702 * 119.99805 * 2 1 4 4 C 1.50702 * 119.99834 * 179.97438 * 2 1 3 5 5 O 1.42895 * 109.47033 * 359.97438 * 4 2 1 6 6 N 1.41597 * 113.99755 * 179.97438 * 5 4 2 7 7 C 1.29422 * 120.00321 * 180.02562 * 6 5 4 8 8 C 1.47499 * 120.00089 * 180.02562 * 7 6 5 9 9 C 1.39745 * 120.05967 * 359.97438 * 8 7 6 10 10 C 1.37781 * 120.02466 * 180.02562 * 9 8 7 11 11 C 1.38961 * 120.13507 * 359.97438 * 10 9 8 12 12 O 1.35686 * 119.94254 * 179.97438 * 11 10 9 13 13 C 1.34787 * 116.99521 * 354.37960 * 12 11 10 14 14 H 1.08003 * 120.00665 * 5.06039 * 13 12 11 15 15 C 1.38658 * 119.99613 * 185.06565 * 13 12 11 16 16 N 1.31550 * 119.99971 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99998 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47099 * 60.00124 * 17 15 13 19 19 H 1.48495 * 109.47205 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47391 * 300.00387 * 17 15 13 21 21 C 1.39525 * 120.11416 * 359.97438 * 11 10 9 22 22 O 1.35953 * 120.00573 * 180.02562 * 21 11 10 23 23 C 1.42900 * 116.99748 * 180.02562 * 22 21 11 24 24 C 1.38192 * 119.98009 * 0.28021 * 21 11 10 25 25 H 1.08000 * 119.99880 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99691 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46673 * 269.99565 * 3 2 1 28 28 H 1.08994 * 109.47218 * 29.99646 * 3 2 1 29 29 H 1.09000 * 109.46639 * 150.00407 * 3 2 1 30 30 H 1.09002 * 109.46731 * 240.00042 * 4 2 1 31 31 H 1.09000 * 109.47049 * 120.00354 * 4 2 1 32 32 H 1.07997 * 119.99597 * 359.97438 * 7 6 5 33 33 H 1.07995 * 119.99213 * 0.02562 * 9 8 7 34 34 H 1.07994 * 119.93396 * 179.97438 * 10 9 8 35 35 H 0.97011 * 120.00064 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47452 * 180.02562 * 23 22 21 37 37 H 1.09001 * 109.47514 * 60.00440 * 23 22 21 38 38 H 1.09006 * 109.47366 * 300.00026 * 23 22 21 39 39 H 1.08004 * 120.07011 * 179.72437 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 8 1.1349 -2.3912 0.0017 6 7 1.7439 -3.6696 0.0017 7 6 1.0104 -4.7358 0.0022 8 6 1.6447 -6.0674 0.0028 9 6 3.0377 -6.1792 0.0023 10 6 3.6295 -7.4234 0.0024 11 6 2.8439 -8.5696 0.0034 12 8 3.4309 -9.7930 0.0029 13 6 4.7730 -9.8276 -0.1162 14 1 5.3385 -8.9075 -0.1234 15 6 5.4277 -11.0446 -0.2296 16 7 4.7389 -12.1653 -0.2215 17 14 7.2877 -11.0926 -0.3954 18 1 7.9075 -10.4616 0.7975 19 1 7.7391 -12.5034 -0.5004 20 1 7.6953 -10.3509 -1.6156 21 6 1.4526 -8.4647 0.0049 22 8 0.6861 -9.5876 0.0064 23 6 -0.7312 -9.4055 0.0073 24 6 0.8540 -7.2192 -0.0005 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 2.2452 1.6197 -1.0277 28 1 1.4745 2.0648 0.5137 29 1 3.0160 1.1747 0.5138 30 1 2.6902 -1.3624 0.8906 31 1 2.6903 -1.3633 -0.8893 32 1 -0.0662 -4.6505 0.0029 33 1 3.6506 -5.2900 0.0020 34 1 4.7062 -7.5080 0.0016 35 1 5.1970 -13.0168 -0.3004 36 1 -1.2226 -10.3785 0.0090 37 1 -1.0269 -8.8503 -0.8829 38 1 -1.0255 -8.8488 0.8971 39 1 -0.2228 -7.1363 -0.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844615118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:09 Heat of formation + Delta-G solvation = -3.271268 kcal Electronic energy + Delta-G solvation = -21744.503478 eV Core-core repulsion = 18235.372570 eV Total energy + Delta-G solvation = -3509.130908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.68810 -37.87596 -37.64361 -36.60113 -35.20400 -33.00135 -32.27758 -29.70646 -29.00054 -27.43300 -26.80976 -26.09956 -25.41672 -22.84286 -21.67646 -20.02915 -18.70104 -18.19993 -17.51831 -17.27267 -16.01879 -15.52525 -15.49127 -15.28445 -15.20298 -14.65778 -14.21190 -14.00826 -13.92692 -13.58697 -13.49258 -13.43740 -12.93921 -12.42479 -12.28381 -11.89215 -11.76069 -11.54896 -11.46192 -11.32336 -11.13459 -11.01031 -10.77520 -10.63705 -10.51784 -9.74547 -9.56383 -9.47879 -9.12663 -8.85565 -7.99035 -6.97917 -6.57684 -4.10616 1.39374 2.02677 2.14027 2.81098 2.90740 3.08232 3.12205 3.13188 3.86622 3.94975 4.47531 4.67163 4.82986 4.91510 5.01870 5.08852 5.22645 5.26645 5.35995 5.44387 5.50887 5.51283 5.53317 5.65950 5.70703 5.77852 5.82954 5.84603 6.09688 6.22197 6.29310 6.42024 6.47388 6.70692 6.84076 7.01162 7.11909 7.20573 7.48647 7.82294 7.84596 8.08411 8.85624 9.53632 10.58173 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.003065 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.667194 B = 9132.300869 C =10649.202210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.138 4.138 3 C -0.112 4.112 4 C 0.115 3.885 5 O -0.255 6.255 6 N -0.363 5.363 7 C 0.182 3.818 8 C -0.146 4.146 9 C -0.042 4.042 10 C -0.227 4.227 11 C 0.151 3.849 12 O -0.149 6.149 13 C -0.391 4.391 14 H 0.097 0.903 15 C 0.042 3.958 16 N -0.847 5.847 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.268 1.268 21 C 0.052 3.948 22 O -0.302 6.302 23 C 0.030 3.970 24 C -0.132 4.132 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.274 0.726 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 16.150 0.200 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.140 4.140 3 C -0.169 4.169 4 C 0.038 3.962 5 O -0.266 6.266 6 N -0.113 5.113 7 C -0.025 4.025 8 C -0.149 4.149 9 C -0.063 4.063 10 C -0.246 4.246 11 C 0.094 3.906 12 O -0.050 6.050 13 C -0.467 4.467 14 H 0.114 0.886 15 C -0.165 4.165 16 N -0.479 5.479 17 Si 0.768 3.232 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.193 1.193 21 C 0.007 3.993 22 O -0.216 6.216 23 C -0.066 4.066 24 C -0.153 4.153 25 H 0.124 0.876 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.977 15.901 0.204 16.988 hybrid contribution -0.099 0.172 -0.083 0.215 sum -6.076 16.073 0.120 17.183 Atomic orbital electron populations 1.23694 0.95441 1.02082 1.00359 1.21685 0.95942 0.94314 1.02013 1.20749 1.00227 0.93589 1.02346 1.20976 0.91264 0.82668 1.01299 1.89697 1.31514 1.11157 1.94266 1.76793 1.25653 0.89760 1.19067 1.24186 0.97392 0.90619 0.90332 1.17483 0.92922 0.88345 1.16181 1.20884 0.93211 0.96781 0.95389 1.20868 1.00563 0.90893 1.12325 1.18859 0.89013 0.86974 0.95742 1.84015 1.22985 1.22437 1.75515 1.21453 0.78635 0.94832 1.51772 0.88580 1.25387 1.00918 0.94067 0.96118 1.70054 1.36625 0.97834 1.43431 0.85726 0.79964 0.78066 0.79426 1.19256 1.20138 1.19253 1.17953 0.88279 0.85515 1.07560 1.86249 1.16891 1.28701 1.89752 1.22916 0.80465 1.02854 1.00365 1.20663 0.98769 0.90309 1.05546 0.87590 0.88529 0.91263 0.91434 0.91625 0.91767 0.91761 0.87324 0.86168 0.84450 0.91611 0.89003 0.93445 0.93466 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 13.67 29.01 0.40 -1.46 16 2 C -0.14 -1.44 6.05 -101.07 -0.61 -2.06 16 3 C -0.11 -0.84 10.03 36.01 0.36 -0.48 16 4 C 0.11 1.43 6.80 36.01 0.24 1.68 16 5 O -0.25 -3.92 9.76 -11.47 -0.11 -4.03 16 6 N -0.36 -6.02 10.46 32.11 0.34 -5.69 16 7 C 0.18 2.86 10.90 -14.79 -0.16 2.70 16 8 C -0.15 -2.57 5.87 -105.01 -0.62 -3.18 16 9 C -0.04 -0.79 9.56 -39.19 -0.37 -1.16 16 10 C -0.23 -4.80 9.15 -39.48 -0.36 -5.16 16 11 C 0.15 3.61 6.67 -38.83 -0.26 3.35 16 12 O -0.15 -4.19 9.53 -14.25 -0.14 -4.32 16 13 C -0.39 -10.57 9.48 30.89 0.29 -10.27 16 14 H 0.10 2.36 5.19 -52.48 -0.27 2.09 16 15 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 16 N -0.85 -24.17 13.67 55.48 0.76 -23.41 16 17 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 C 0.05 1.10 6.70 -39.12 -0.26 0.84 16 22 O -0.30 -6.30 10.28 -34.21 -0.35 -6.65 16 23 C 0.03 0.42 9.81 101.05 0.99 1.41 16 24 C -0.13 -2.30 8.77 -39.05 -0.34 -2.64 16 25 H 0.11 1.24 6.84 -52.49 -0.36 0.88 16 26 H 0.10 0.80 8.04 -52.49 -0.42 0.38 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.43 8.06 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.12 2.08 7.54 -52.49 -0.40 1.69 16 34 H 0.14 2.84 5.62 -52.49 -0.29 2.55 16 35 H 0.27 7.14 8.31 -40.81 -0.34 6.80 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 38 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 39 H 0.12 1.73 6.29 -52.48 -0.33 1.40 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -31.14 343.45 -5.11 -36.25 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.96 Total: 3.37 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.80 Total: -15.42 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 1.09 Total: -29.10 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.60 Total: -15.00 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.14 -5.11 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844615118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.976 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds