Wall clock time and date at job start Tue Mar 31 2020 07:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50702 * 119.99805 * 2 1 4 4 C 1.50702 * 119.99834 * 179.97438 * 2 1 3 5 5 O 1.42895 * 109.47033 * 359.97438 * 4 2 1 6 6 N 1.41597 * 113.99755 * 179.97438 * 5 4 2 7 7 C 1.29422 * 120.00321 * 180.02562 * 6 5 4 8 8 C 1.47499 * 120.00089 * 180.02562 * 7 6 5 9 9 C 1.39745 * 120.05967 * 359.97438 * 8 7 6 10 10 C 1.37781 * 120.02466 * 180.02562 * 9 8 7 11 11 C 1.38961 * 120.13507 * 359.97438 * 10 9 8 12 12 O 1.35686 * 119.94254 * 179.97438 * 11 10 9 13 13 C 1.34787 * 116.99521 * 354.37960 * 12 11 10 14 14 H 1.08003 * 120.00665 * 5.06039 * 13 12 11 15 15 C 1.38658 * 119.99613 * 185.06565 * 13 12 11 16 16 N 1.31550 * 119.99971 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99998 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47099 * 60.00124 * 17 15 13 19 19 H 1.48495 * 109.47205 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47391 * 300.00387 * 17 15 13 21 21 C 1.39525 * 120.11416 * 359.97438 * 11 10 9 22 22 O 1.35953 * 120.00573 * 180.02562 * 21 11 10 23 23 C 1.42900 * 116.99748 * 180.02562 * 22 21 11 24 24 C 1.38192 * 119.98009 * 0.28021 * 21 11 10 25 25 H 1.08000 * 119.99880 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99691 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46673 * 269.99565 * 3 2 1 28 28 H 1.08994 * 109.47218 * 29.99646 * 3 2 1 29 29 H 1.09000 * 109.46639 * 150.00407 * 3 2 1 30 30 H 1.09002 * 109.46731 * 240.00042 * 4 2 1 31 31 H 1.09000 * 109.47049 * 120.00354 * 4 2 1 32 32 H 1.07997 * 119.99597 * 359.97438 * 7 6 5 33 33 H 1.07995 * 119.99213 * 0.02562 * 9 8 7 34 34 H 1.07994 * 119.93396 * 179.97438 * 10 9 8 35 35 H 0.97011 * 120.00064 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47452 * 180.02562 * 23 22 21 37 37 H 1.09001 * 109.47514 * 60.00440 * 23 22 21 38 38 H 1.09006 * 109.47366 * 300.00026 * 23 22 21 39 39 H 1.08004 * 120.07011 * 179.72437 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 8 1.1349 -2.3912 0.0017 6 7 1.7439 -3.6696 0.0017 7 6 1.0104 -4.7358 0.0022 8 6 1.6447 -6.0674 0.0028 9 6 3.0377 -6.1792 0.0023 10 6 3.6295 -7.4234 0.0024 11 6 2.8439 -8.5696 0.0034 12 8 3.4309 -9.7930 0.0029 13 6 4.7730 -9.8276 -0.1162 14 1 5.3385 -8.9075 -0.1234 15 6 5.4277 -11.0446 -0.2296 16 7 4.7389 -12.1653 -0.2215 17 14 7.2877 -11.0926 -0.3954 18 1 7.9075 -10.4616 0.7975 19 1 7.7391 -12.5034 -0.5004 20 1 7.6953 -10.3509 -1.6156 21 6 1.4526 -8.4647 0.0049 22 8 0.6861 -9.5876 0.0064 23 6 -0.7312 -9.4055 0.0073 24 6 0.8540 -7.2192 -0.0005 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 2.2452 1.6197 -1.0277 28 1 1.4745 2.0648 0.5137 29 1 3.0160 1.1747 0.5138 30 1 2.6902 -1.3624 0.8906 31 1 2.6903 -1.3633 -0.8893 32 1 -0.0662 -4.6505 0.0029 33 1 3.6506 -5.2900 0.0020 34 1 4.7062 -7.5080 0.0016 35 1 5.1970 -13.0168 -0.3004 36 1 -1.2226 -10.3785 0.0090 37 1 -1.0269 -8.8503 -0.8829 38 1 -1.0255 -8.8488 0.8971 39 1 -0.2228 -7.1363 -0.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844615118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:08 Heat of formation + Delta-G solvation = -22.121391 kcal Electronic energy + Delta-G solvation = -21745.320880 eV Core-core repulsion = 18235.372570 eV Total energy + Delta-G solvation = -3509.948311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29558 -39.29487 -39.02126 -38.04803 -36.27749 -34.51335 -33.91183 -31.27420 -30.47728 -28.17037 -27.94291 -27.48343 -26.98699 -24.33602 -23.26860 -21.46023 -19.95400 -19.56859 -19.14087 -18.57326 -17.53298 -16.84429 -16.65768 -16.56673 -16.53863 -16.31157 -15.55495 -15.39501 -15.26236 -15.12781 -14.98033 -14.26233 -13.97809 -13.75412 -13.53512 -13.48671 -13.00723 -12.86263 -12.76872 -12.54819 -12.50608 -12.21654 -12.10651 -12.01838 -11.92256 -11.42352 -10.97813 -10.87548 -10.61107 -9.94665 -9.51792 -8.64411 -8.47361 -6.12169 -0.06929 0.54454 1.24180 1.37152 1.40890 1.53383 1.57332 1.61775 2.17651 2.58495 2.82660 3.12964 3.35270 3.73388 3.86759 3.95587 4.13363 4.26018 4.31981 4.42411 4.42596 4.46462 4.50258 4.52033 4.66608 4.70302 4.77992 4.84822 4.92324 5.01136 5.04637 5.11363 5.12656 5.39113 5.49134 5.57779 5.62799 5.88791 5.93542 5.96610 6.56581 6.64098 6.95725 7.74192 8.74282 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.003065 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.667194 B = 9132.300869 C =10649.202210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C -0.110 4.110 4 C 0.105 3.895 5 O -0.256 6.256 6 N -0.373 5.373 7 C 0.181 3.819 8 C -0.117 4.117 9 C -0.053 4.053 10 C -0.222 4.222 11 C 0.108 3.892 12 O -0.209 6.209 13 C -0.417 4.417 14 H 0.107 0.893 15 C -0.019 4.019 16 N -0.912 5.912 17 Si 1.019 2.981 18 H -0.256 1.256 19 H -0.272 1.272 20 H -0.257 1.257 21 C 0.042 3.958 22 O -0.341 6.341 23 C 0.017 3.983 24 C -0.115 4.115 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.274 0.726 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 20.014 0.157 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.145 4.145 3 C -0.166 4.166 4 C 0.029 3.971 5 O -0.270 6.270 6 N -0.120 5.120 7 C -0.027 4.027 8 C -0.120 4.120 9 C -0.073 4.073 10 C -0.241 4.241 11 C 0.055 3.945 12 O -0.114 6.114 13 C -0.492 4.492 14 H 0.124 0.876 15 C -0.218 4.218 16 N -0.549 5.549 17 Si 0.838 3.162 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.181 1.181 21 C -0.003 4.003 22 O -0.256 6.256 23 C -0.077 4.077 24 C -0.135 4.135 25 H 0.108 0.892 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.351 19.836 0.164 21.155 hybrid contribution -0.050 -0.522 -0.054 0.527 sum -7.401 19.313 0.110 20.683 Atomic orbital electron populations 1.23796 0.95513 1.02448 1.00280 1.21860 0.96157 0.94347 1.02150 1.20793 1.00348 0.92239 1.03256 1.21240 0.91480 0.82791 1.01563 1.89711 1.32304 1.10832 1.94118 1.76676 1.26999 0.90822 1.17505 1.24172 0.98957 0.89222 0.90376 1.17827 0.92487 0.89765 1.11888 1.21065 0.94299 0.96150 0.95834 1.20978 1.00481 0.91316 1.11334 1.19532 0.90827 0.86820 0.97298 1.84000 1.23322 1.24446 1.79589 1.21906 0.79147 0.95634 1.52562 0.87596 1.26632 1.06232 0.93356 0.95602 1.70204 1.38793 0.98507 1.47398 0.84642 0.73275 0.78293 0.79989 1.17998 1.19677 1.18074 1.18252 0.87707 0.87033 1.07284 1.86212 1.20158 1.29463 1.89815 1.23326 0.77090 1.04858 1.02414 1.21061 1.00987 0.88450 1.03046 0.89185 0.86317 0.90332 0.90040 0.91071 0.91547 0.91565 0.83782 0.84576 0.84921 0.91692 0.87419 0.91239 0.91183 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 13.67 67.77 0.93 -2.36 16 2 C -0.14 -2.60 6.05 -16.50 -0.10 -2.69 16 3 C -0.11 -1.29 10.03 71.24 0.71 -0.58 16 4 C 0.11 2.37 6.80 71.24 0.48 2.85 16 5 O -0.26 -7.09 9.76 -38.78 -0.38 -7.47 16 6 N -0.37 -11.08 10.46 -52.32 -0.55 -11.63 16 7 C 0.18 4.91 10.90 87.49 0.95 5.87 16 8 C -0.12 -3.75 5.87 -20.12 -0.12 -3.87 16 9 C -0.05 -1.92 9.56 22.53 0.22 -1.70 16 10 C -0.22 -9.57 9.15 22.33 0.20 -9.36 16 11 C 0.11 5.38 6.67 22.75 0.15 5.53 16 12 O -0.21 -12.57 9.53 -7.62 -0.07 -12.65 16 13 C -0.42 -24.00 9.48 67.92 0.64 -23.35 16 14 H 0.11 5.51 5.19 -2.91 -0.02 5.50 16 15 C -0.02 -1.10 5.49 84.84 0.47 -0.63 16 16 N -0.91 -55.78 13.67 21.61 0.30 -55.49 16 17 Si 1.02 42.25 29.55 68.60 2.03 44.28 16 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 C 0.04 1.79 6.70 22.57 0.15 1.94 16 22 O -0.34 -14.37 10.28 -79.04 -0.81 -15.18 16 23 C 0.02 0.45 9.81 113.37 1.11 1.56 16 24 C -0.11 -3.66 8.77 22.61 0.20 -3.46 16 25 H 0.09 1.89 6.84 -2.91 -0.02 1.87 16 26 H 0.12 1.56 8.04 -2.91 -0.02 1.54 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.75 8.06 -2.39 -0.02 0.74 16 29 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.14 4.45 7.54 -2.91 -0.02 4.43 16 34 H 0.13 5.72 5.62 -2.91 -0.02 5.70 16 35 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 1.48 7.65 -2.39 -0.02 1.47 16 38 H 0.07 1.49 7.67 -2.38 -0.02 1.47 16 39 H 0.17 3.82 6.29 -2.91 -0.02 3.81 16 Total: -1.00 -73.77 343.45 7.57 -66.20 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 1.06 Total: 22.19 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 6.00 Total: -30.25 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: -0.25 Total: -67.12 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.26 Total: -35.30 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -73.77 7.57 -66.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844615118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.075 kcal (2) G-P(sol) polarization free energy of solvation -73.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds