Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35623 * 119.99845 * 2 1 4 4 C 1.41608 * 120.00052 * 186.13841 * 3 2 1 5 5 C 1.37946 * 126.10507 * 175.25003 * 4 3 2 6 6 C 1.40318 * 106.52863 * 179.84427 * 5 4 3 7 7 C 1.35151 * 107.20727 * 0.40919 * 6 5 4 8 8 O 1.34027 * 109.02828 * 359.74125 * 7 6 5 9 9 C 1.41551 * 120.00279 * 179.97438 * 2 1 3 10 10 O 1.21774 * 119.99507 * 76.51233 * 9 2 1 11 11 N 1.34772 * 120.00085 * 256.51166 * 9 2 1 12 12 C 1.47419 * 125.65100 * 5.01269 * 11 9 2 13 13 C 1.55127 * 104.72689 * 155.81546 * 12 11 9 14 14 C 1.55157 * 101.48263 * 37.29298 * 13 12 11 15 15 O 1.42900 * 110.72269 * 82.70046 * 14 13 12 16 16 C 1.50704 * 110.87120 * 205.89799 * 14 13 12 17 17 H 1.08004 * 119.99643 * 355.06727 * 16 14 13 18 18 C 1.37870 * 120.00260 * 175.06325 * 16 14 13 19 19 N 1.31516 * 119.99934 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00475 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46770 * 59.99891 * 20 18 16 22 22 H 1.48490 * 109.47518 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47004 * 300.00229 * 20 18 16 24 24 C 1.47022 * 125.64889 * 185.31589 * 11 9 2 25 25 H 1.08994 * 109.47445 * 94.99564 * 1 2 3 26 26 H 1.09000 * 109.47094 * 214.99002 * 1 2 3 27 27 H 1.09000 * 109.47504 * 334.98835 * 1 2 3 28 28 H 1.08006 * 120.00398 * 6.39887 * 3 2 1 29 29 H 1.08007 * 126.73590 * 359.97438 * 5 4 3 30 30 H 1.08004 * 126.39665 * 180.11260 * 6 5 4 31 31 H 1.07995 * 125.48386 * 179.77482 * 7 6 5 32 32 H 1.09007 * 110.36558 * 274.74271 * 12 11 9 33 33 H 1.09002 * 110.37315 * 37.06090 * 12 11 9 34 34 H 1.09000 * 111.18975 * 279.18826 * 13 12 11 35 35 H 1.09000 * 110.94310 * 155.28558 * 13 12 11 36 36 H 0.96697 * 114.00059 * 185.01929 * 15 14 13 37 37 H 0.97003 * 120.00069 * 179.97438 * 19 18 16 38 38 H 1.09007 * 109.88070 * 300.44061 * 24 11 9 39 39 H 1.09000 * 109.88477 * 61.44702 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.1745 0.0000 4 6 3.5950 1.1781 -0.1311 5 6 4.3986 2.2942 -0.2388 6 6 5.7178 1.8277 -0.3439 7 6 5.6686 0.4776 -0.3067 8 8 4.3919 0.0902 -0.1787 9 6 2.2148 -1.2258 0.0005 10 8 2.3062 -1.8765 -1.0247 11 7 2.7875 -1.6728 1.1357 12 6 2.6683 -1.0438 2.4636 13 6 2.9337 -2.1940 3.4701 14 6 4.0421 -2.9956 2.7377 15 8 5.3252 -2.4099 2.9672 16 6 4.0330 -4.4401 3.1674 17 1 3.3668 -4.7656 3.9527 18 6 4.8750 -5.3459 2.5581 19 7 5.6866 -4.9494 1.6022 20 14 4.8633 -7.1365 3.0902 21 1 3.5087 -7.7069 2.8781 22 1 5.8530 -7.8981 2.2869 23 1 5.2191 -7.2276 4.5291 24 6 3.6398 -2.8649 1.2536 25 1 -0.3634 -0.0895 -1.0237 26 1 -0.3633 -0.8419 0.5893 27 1 -0.3634 0.9313 0.4345 28 1 1.6501 2.1070 0.1042 29 1 4.0759 3.3249 -0.2396 30 1 6.6061 2.4341 -0.4417 31 1 6.5208 -0.1827 -0.3693 32 1 3.4133 -0.2564 2.5787 33 1 1.6651 -0.6413 2.6042 34 1 2.0420 -2.8037 3.6157 35 1 3.2972 -1.8038 4.4207 36 1 6.0424 -2.8268 2.4703 37 1 6.2793 -5.5866 1.1737 38 1 3.0852 -3.7496 0.9406 39 1 4.5295 -2.7472 0.6350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848236734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -46.498571 kcal Electronic energy + Delta-G solvation = -24441.375787 eV Core-core repulsion = 20930.370403 eV Total energy + Delta-G solvation = -3511.005384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.27980 -39.58663 -37.32797 -34.86140 -34.13023 -32.79226 -32.20946 -30.32235 -29.93301 -27.80395 -26.38072 -25.39941 -23.44399 -21.83730 -21.30774 -20.45949 -19.54891 -18.26138 -17.27732 -16.98050 -15.92010 -15.71056 -15.51871 -15.03270 -14.86612 -14.42106 -13.83123 -13.39835 -13.22159 -12.98755 -12.87699 -12.79912 -12.70268 -12.41941 -12.27795 -11.93454 -11.64389 -11.56969 -11.30462 -11.02267 -10.77685 -10.63635 -10.49758 -10.26582 -10.14849 -9.65174 -9.31794 -9.27052 -8.65827 -8.28496 -7.77204 -7.60559 -6.26812 -4.35130 0.87786 2.47277 2.96792 3.10509 3.23421 3.28840 3.30825 3.41440 3.88466 4.28548 4.76088 4.96794 5.03095 5.11157 5.20085 5.34989 5.44715 5.49128 5.60033 5.68041 5.79068 5.83174 5.93647 5.96796 6.09365 6.09685 6.25767 6.35453 6.42188 6.54550 6.70316 6.78524 6.91570 7.07854 7.30647 7.36569 7.42523 7.74465 8.04114 8.30585 8.66810 8.79322 9.31085 9.39653 10.80883 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.005696 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.926142 B = 4914.270325 C = 5498.274624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.134 4.134 3 C -0.065 4.065 4 C -0.003 4.003 5 C -0.186 4.186 6 C -0.227 4.227 7 C -0.011 4.011 8 O -0.143 6.143 9 C 0.563 3.437 10 O -0.550 6.550 11 N -0.595 5.595 12 C 0.106 3.894 13 C -0.118 4.118 14 C 0.249 3.751 15 O -0.584 6.584 16 C -0.538 4.538 17 H 0.065 0.935 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.109 3.891 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.201 0.799 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.380 0.620 37 H 0.270 0.730 38 H 0.064 0.936 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 13.228 -1.310 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C -0.084 4.084 4 C -0.053 4.053 5 C -0.205 4.205 6 C -0.246 4.246 7 C -0.081 4.081 8 O -0.037 6.037 9 C 0.351 3.649 10 O -0.430 6.430 11 N -0.327 5.327 12 C -0.017 4.017 13 C -0.155 4.155 14 C 0.209 3.791 15 O -0.392 6.392 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.132 4.132 19 N -0.533 5.533 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.012 4.012 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.217 0.783 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.122 12.905 -1.624 13.979 hybrid contribution 0.642 -1.126 -0.207 1.312 sum -4.480 11.779 -1.831 12.734 Atomic orbital electron populations 1.20688 0.89249 1.03001 1.03038 1.21184 0.97640 0.93780 1.01050 1.20213 0.88294 0.97996 1.01871 1.19903 0.91837 0.84802 1.08727 1.22093 0.92701 0.98497 1.07214 1.21635 0.98155 0.94607 1.10194 1.24312 0.84963 0.95927 1.02908 1.84312 1.16908 1.33838 1.68630 1.16483 0.79616 0.85537 0.83241 1.90827 1.62018 1.58371 1.31750 1.48699 1.48542 1.28393 1.07111 1.22292 0.99738 0.96638 0.83063 1.22781 0.99346 0.95866 0.97555 1.19479 0.81056 0.90763 0.87793 1.86112 1.18638 1.62248 1.72210 1.21467 1.22742 0.92586 1.20794 0.91685 1.25055 0.94588 0.99546 0.94016 1.69690 1.23537 1.35886 1.24159 0.86471 0.78024 0.83754 0.78716 1.20051 1.21101 1.20022 1.22914 0.92962 0.84625 1.00724 0.90239 0.91210 0.90872 0.82984 0.83414 0.83508 0.78265 0.92075 0.92235 0.90527 0.90680 0.76963 0.92027 0.91801 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.02 36.00 0.36 -0.84 16 2 C -0.13 -2.11 4.52 -104.30 -0.47 -2.58 16 3 C -0.06 -0.90 9.54 -39.23 -0.37 -1.28 16 4 C 0.00 -0.04 6.71 -38.40 -0.26 -0.30 16 5 C -0.19 -2.53 10.90 -38.91 -0.42 -2.96 16 6 C -0.23 -3.10 10.87 -39.90 -0.43 -3.53 16 7 C -0.01 -0.18 12.06 29.63 0.36 0.18 16 8 O -0.14 -2.72 7.71 4.68 0.04 -2.68 16 9 C 0.56 11.73 4.61 -15.00 -0.07 11.67 16 10 O -0.55 -13.72 17.42 5.12 0.09 -13.63 16 11 N -0.60 -12.59 2.58 -173.81 -0.45 -13.04 16 12 C 0.11 1.95 6.60 -2.41 -0.02 1.93 16 13 C -0.12 -2.37 6.24 -24.46 -0.15 -2.53 16 14 C 0.25 6.04 0.85 -89.94 -0.08 5.96 16 15 O -0.58 -14.57 13.07 -35.23 -0.46 -15.03 16 16 C -0.54 -14.10 8.13 -34.44 -0.28 -14.38 16 17 H 0.06 1.68 7.78 -52.48 -0.41 1.27 16 18 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 19 N -0.89 -23.80 10.96 55.43 0.61 -23.19 16 20 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.11 2.69 5.24 -3.07 -0.02 2.67 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 28 H 0.15 1.45 8.03 -52.48 -0.42 1.03 16 29 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.20 2.72 8.06 -52.49 -0.42 2.30 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.91 7.78 -51.93 -0.40 0.51 16 34 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.38 9.70 7.45 45.56 0.34 10.04 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.06 1.73 7.82 -51.93 -0.41 1.33 16 39 H 0.06 1.73 7.92 -51.93 -0.41 1.31 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -31.66 332.03 -6.78 -38.44 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -4.64 Total: 12.81 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.95 Total: -4.21 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.16 Total: -36.24 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.34 Total: -31.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.66 -6.78 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848236734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.056 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds