Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35623 * 119.99845 * 2 1 4 4 C 1.41608 * 120.00052 * 186.13841 * 3 2 1 5 5 C 1.37946 * 126.10507 * 175.25003 * 4 3 2 6 6 C 1.40318 * 106.52863 * 179.84427 * 5 4 3 7 7 C 1.35151 * 107.20727 * 0.40919 * 6 5 4 8 8 O 1.34027 * 109.02828 * 359.74125 * 7 6 5 9 9 C 1.41551 * 120.00279 * 179.97438 * 2 1 3 10 10 O 1.21774 * 119.99507 * 76.51233 * 9 2 1 11 11 N 1.34772 * 120.00085 * 256.51166 * 9 2 1 12 12 C 1.47419 * 125.65100 * 5.01269 * 11 9 2 13 13 C 1.55127 * 104.72689 * 155.81546 * 12 11 9 14 14 C 1.55157 * 101.48263 * 37.29298 * 13 12 11 15 15 O 1.42900 * 110.72269 * 82.70046 * 14 13 12 16 16 C 1.50704 * 110.87120 * 205.89799 * 14 13 12 17 17 H 1.08004 * 119.99643 * 355.06727 * 16 14 13 18 18 C 1.37870 * 120.00260 * 175.06325 * 16 14 13 19 19 N 1.31516 * 119.99934 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00475 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46770 * 59.99891 * 20 18 16 22 22 H 1.48490 * 109.47518 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47004 * 300.00229 * 20 18 16 24 24 C 1.47022 * 125.64889 * 185.31589 * 11 9 2 25 25 H 1.08994 * 109.47445 * 94.99564 * 1 2 3 26 26 H 1.09000 * 109.47094 * 214.99002 * 1 2 3 27 27 H 1.09000 * 109.47504 * 334.98835 * 1 2 3 28 28 H 1.08006 * 120.00398 * 6.39887 * 3 2 1 29 29 H 1.08007 * 126.73590 * 359.97438 * 5 4 3 30 30 H 1.08004 * 126.39665 * 180.11260 * 6 5 4 31 31 H 1.07995 * 125.48386 * 179.77482 * 7 6 5 32 32 H 1.09007 * 110.36558 * 274.74271 * 12 11 9 33 33 H 1.09002 * 110.37315 * 37.06090 * 12 11 9 34 34 H 1.09000 * 111.18975 * 279.18826 * 13 12 11 35 35 H 1.09000 * 110.94310 * 155.28558 * 13 12 11 36 36 H 0.96697 * 114.00059 * 185.01929 * 15 14 13 37 37 H 0.97003 * 120.00069 * 179.97438 * 19 18 16 38 38 H 1.09007 * 109.88070 * 300.44061 * 24 11 9 39 39 H 1.09000 * 109.88477 * 61.44702 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.1745 0.0000 4 6 3.5950 1.1781 -0.1311 5 6 4.3986 2.2942 -0.2388 6 6 5.7178 1.8277 -0.3439 7 6 5.6686 0.4776 -0.3067 8 8 4.3919 0.0902 -0.1787 9 6 2.2148 -1.2258 0.0005 10 8 2.3062 -1.8765 -1.0247 11 7 2.7875 -1.6728 1.1357 12 6 2.6683 -1.0438 2.4636 13 6 2.9337 -2.1940 3.4701 14 6 4.0421 -2.9956 2.7377 15 8 5.3252 -2.4099 2.9672 16 6 4.0330 -4.4401 3.1674 17 1 3.3668 -4.7656 3.9527 18 6 4.8750 -5.3459 2.5581 19 7 5.6866 -4.9494 1.6022 20 14 4.8633 -7.1365 3.0902 21 1 3.5087 -7.7069 2.8781 22 1 5.8530 -7.8981 2.2869 23 1 5.2191 -7.2276 4.5291 24 6 3.6398 -2.8649 1.2536 25 1 -0.3634 -0.0895 -1.0237 26 1 -0.3633 -0.8419 0.5893 27 1 -0.3634 0.9313 0.4345 28 1 1.6501 2.1070 0.1042 29 1 4.0759 3.3249 -0.2396 30 1 6.6061 2.4341 -0.4417 31 1 6.5208 -0.1827 -0.3693 32 1 3.4133 -0.2564 2.5787 33 1 1.6651 -0.6413 2.6042 34 1 2.0420 -2.8037 3.6157 35 1 3.2972 -1.8038 4.4207 36 1 6.0424 -2.8268 2.4703 37 1 6.2793 -5.5866 1.1737 38 1 3.0852 -3.7496 0.9406 39 1 4.5295 -2.7472 0.6350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848236734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -68.491266 kcal Electronic energy + Delta-G solvation = -24442.329462 eV Core-core repulsion = 20930.370403 eV Total energy + Delta-G solvation = -3511.959059 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.46510 -41.20563 -39.09798 -36.25243 -35.85558 -34.24856 -33.95513 -31.71032 -31.32801 -29.62857 -27.59879 -27.07884 -25.05314 -23.23872 -22.46819 -21.73473 -21.41208 -19.63233 -19.13463 -18.50745 -17.40576 -17.29912 -16.95755 -16.65725 -16.39952 -16.16659 -15.23641 -14.85914 -14.82808 -14.60386 -14.23768 -14.07176 -13.77625 -13.66951 -13.54258 -13.49039 -13.33725 -13.08626 -12.84865 -12.64991 -12.53888 -12.35389 -12.33470 -12.10816 -11.41037 -11.18393 -10.98015 -10.71164 -10.65477 -10.28058 -9.54750 -8.74658 -8.27885 -6.44033 -0.26112 1.31260 1.40368 1.40967 1.49007 1.56397 1.94102 2.20501 2.33199 2.40707 2.98509 3.64079 3.77931 3.79158 4.06788 4.08270 4.10534 4.22735 4.34638 4.43819 4.58540 4.59117 4.70488 4.72708 4.78624 4.92010 5.00493 5.04589 5.09403 5.11850 5.21848 5.28491 5.35332 5.39840 5.51537 5.68920 5.72135 6.04427 6.23006 6.61085 6.69380 7.15732 7.25519 7.32915 8.77848 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.005696 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.926142 B = 4914.270325 C = 5498.274624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.168 4.168 3 C -0.037 4.037 4 C -0.044 4.044 5 C -0.165 4.165 6 C -0.216 4.216 7 C -0.047 4.047 8 O -0.187 6.187 9 C 0.562 3.438 10 O -0.607 6.607 11 N -0.598 5.598 12 C 0.115 3.885 13 C -0.113 4.113 14 C 0.237 3.763 15 O -0.585 6.585 16 C -0.559 4.559 17 H 0.067 0.933 18 C 0.025 3.975 19 N -0.915 5.915 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.131 3.869 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.208 0.792 29 H 0.190 0.810 30 H 0.178 0.822 31 H 0.202 0.798 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.373 0.627 37 H 0.269 0.731 38 H 0.024 0.976 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 16.131 -0.173 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.171 4.171 3 C -0.055 4.055 4 C -0.093 4.093 5 C -0.184 4.184 6 C -0.234 4.234 7 C -0.116 4.116 8 O -0.083 6.083 9 C 0.354 3.646 10 O -0.491 6.491 11 N -0.329 5.329 12 C -0.007 4.007 13 C -0.150 4.150 14 C 0.196 3.804 15 O -0.392 6.392 16 C -0.598 4.598 17 H 0.085 0.915 18 C -0.175 4.175 19 N -0.554 5.554 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.191 1.191 24 C 0.008 3.992 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.135 0.865 28 H 0.224 0.776 29 H 0.207 0.793 30 H 0.196 0.804 31 H 0.218 0.782 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.222 0.778 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.511 15.844 -0.454 17.136 hybrid contribution 1.200 -1.962 -0.611 2.380 sum -5.311 13.882 -1.065 14.902 Atomic orbital electron populations 1.20733 0.86121 1.04927 1.03299 1.21163 0.99425 0.91542 1.04926 1.20869 0.87302 0.99229 0.98113 1.20692 0.93144 0.84984 1.10487 1.22621 0.91886 0.99656 1.04191 1.22067 0.99675 0.93630 1.08054 1.24717 0.84662 0.97607 1.04656 1.84279 1.18191 1.36025 1.69784 1.17421 0.78619 0.86684 0.81896 1.90778 1.64045 1.60628 1.33670 1.48735 1.47966 1.27434 1.08753 1.22355 1.02082 0.95552 0.80702 1.22788 0.97948 0.96057 0.98236 1.19661 0.81676 0.91058 0.87956 1.86099 1.18894 1.62236 1.72013 1.21814 1.22970 0.93966 1.21001 0.91527 1.25821 0.94338 1.03376 0.94010 1.69811 1.23911 1.36886 1.24801 0.85526 0.77897 0.79148 0.78590 1.19864 1.20954 1.19118 1.22360 0.91507 0.84903 1.00474 0.90325 0.92183 0.86459 0.77566 0.79305 0.80444 0.78159 0.92212 0.88011 0.89702 0.89259 0.77784 0.92170 0.95772 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 10.02 71.23 0.71 -1.22 16 2 C -0.17 -4.99 4.52 -19.65 -0.09 -5.08 16 3 C -0.04 -0.90 9.54 22.50 0.21 -0.68 16 4 C -0.04 -1.33 6.71 23.03 0.15 -1.17 16 5 C -0.16 -3.89 10.90 22.71 0.25 -3.64 16 6 C -0.22 -5.43 10.87 22.06 0.24 -5.19 16 7 C -0.05 -1.54 12.06 67.11 0.81 -0.73 16 8 O -0.19 -7.27 7.71 -6.17 -0.05 -7.32 16 9 C 0.56 24.00 4.61 85.06 0.39 24.39 16 10 O -0.61 -32.12 17.42 -4.58 -0.08 -32.20 16 11 N -0.60 -25.93 2.58 -822.00 -2.12 -28.06 16 12 C 0.12 4.08 6.60 86.93 0.57 4.65 16 13 C -0.11 -4.46 6.24 32.06 0.20 -4.26 16 14 C 0.24 11.80 0.85 -10.35 -0.01 11.79 16 15 O -0.58 -30.17 13.07 -148.98 -1.95 -32.12 16 16 C -0.56 -30.05 8.13 25.60 0.21 -29.85 16 17 H 0.07 3.47 7.78 -2.91 -0.02 3.44 16 18 C 0.03 1.37 5.28 84.65 0.45 1.81 16 19 N -0.92 -50.97 10.96 21.44 0.24 -50.73 16 20 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.13 6.84 5.24 86.73 0.45 7.30 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 27 H 0.12 1.34 8.02 -2.39 -0.02 1.32 16 28 H 0.21 2.58 8.03 -2.91 -0.02 2.56 16 29 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.20 5.95 8.06 -2.91 -0.02 5.93 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.10 2.78 7.78 -2.39 -0.02 2.76 16 34 H 0.08 3.20 8.04 -2.39 -0.02 3.18 16 35 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.37 20.10 7.45 -74.06 -0.55 19.54 16 37 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.02 1.41 7.82 -2.38 -0.02 1.39 16 39 H 0.03 1.57 7.92 -2.39 -0.02 1.55 16 Total: -1.00 -74.77 332.03 3.13 -71.64 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.51 Total: 35.74 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.56 Total: -1.88 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.89 Total: -78.79 kcal Atomic # 8 Polarization: -69.56 SS G_CDS: -2.08 Total: -71.64 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.77 3.13 -71.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848236734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.151 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds