Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35629 * 119.99949 * 2 1 4 4 C 1.41599 * 120.00039 * 354.45435 * 3 2 1 5 5 C 1.37953 * 126.10216 * 185.02773 * 4 3 2 6 6 C 1.40322 * 106.52742 * 179.84919 * 5 4 3 7 7 C 1.35154 * 107.20369 * 0.40456 * 6 5 4 8 8 O 1.34026 * 109.03711 * 359.74511 * 7 6 5 9 9 C 1.41555 * 119.99938 * 179.97438 * 2 1 3 10 10 O 1.21780 * 119.99494 * 80.12151 * 9 2 1 11 11 N 1.34777 * 120.00127 * 260.11515 * 9 2 1 12 12 C 1.47423 * 125.64462 * 175.11374 * 11 9 2 13 13 C 1.54915 * 104.83077 * 155.91252 * 12 11 9 14 14 C 1.55163 * 101.57826 * 37.00971 * 13 12 11 15 15 O 1.42892 * 110.72000 * 82.86663 * 14 13 12 16 16 C 1.50702 * 110.71710 * 205.96038 * 14 13 12 17 17 H 1.08009 * 119.99915 * 357.55540 * 16 14 13 18 18 C 1.37876 * 120.00051 * 177.56222 * 16 14 13 19 19 N 1.31511 * 119.99823 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99893 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47135 * 90.00053 * 20 18 16 22 22 H 1.48496 * 109.46929 * 209.99551 * 20 18 16 23 23 H 1.48500 * 109.47301 * 329.99716 * 20 18 16 24 24 C 1.47017 * 125.65061 * 355.16543 * 11 9 2 25 25 H 1.09004 * 109.47630 * 184.37863 * 1 2 3 26 26 H 1.09001 * 109.47726 * 304.38395 * 1 2 3 27 27 H 1.09001 * 109.47186 * 64.38010 * 1 2 3 28 28 H 1.08000 * 119.99978 * 174.45042 * 3 2 1 29 29 H 1.07993 * 126.73662 * 359.97438 * 5 4 3 30 30 H 1.07993 * 126.40043 * 180.12973 * 6 5 4 31 31 H 1.08004 * 125.48346 * 179.76643 * 7 6 5 32 32 H 1.08997 * 110.36875 * 37.07540 * 12 11 9 33 33 H 1.09004 * 110.36732 * 274.74526 * 12 11 9 34 34 H 1.08997 * 111.00084 * 278.93890 * 13 12 11 35 35 H 1.09004 * 111.03648 * 155.09635 * 13 12 11 36 36 H 0.96703 * 114.00300 * 180.02562 * 15 14 13 37 37 H 0.97001 * 119.99935 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.88335 * 61.59767 * 24 11 9 39 39 H 1.09007 * 109.87765 * 300.43473 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4820 2.3980 -0.1185 5 6 2.0460 3.6521 -0.2301 6 6 0.9815 4.5613 -0.3259 7 6 -0.1629 3.8452 -0.2613 8 8 0.1409 2.5458 -0.1368 9 6 2.2147 -1.2259 0.0005 10 8 2.3624 -1.8441 -1.0382 11 7 2.7252 -1.7088 1.1506 12 6 3.3916 -3.0137 1.3137 13 6 4.3031 -2.8411 2.5544 14 6 3.4252 -1.9403 3.4629 15 8 2.4791 -2.7257 4.1909 16 6 4.2834 -1.1350 4.4042 17 1 5.3554 -1.2669 4.4043 18 6 3.7001 -0.2300 5.2655 19 7 2.3948 -0.0692 5.2651 20 14 4.7638 0.7676 6.4328 21 1 5.1695 2.0344 5.7726 22 1 3.9928 1.0760 7.6639 23 1 5.9747 -0.0143 6.7899 24 6 2.7087 -1.0222 2.4505 25 1 -0.3634 -1.0247 0.0785 26 1 -0.3634 0.5803 0.8481 27 1 -0.3633 0.4444 -0.9266 28 1 3.2613 1.1768 0.0905 29 1 3.0998 3.8876 -0.2434 30 1 1.0617 5.6335 -0.4274 31 1 -1.1616 4.2543 -0.3037 32 1 3.9899 -3.2468 0.4329 33 1 2.6543 -3.7968 1.4907 34 1 5.2336 -2.3393 2.2888 35 1 4.5015 -3.8012 3.0308 36 1 1.9053 -2.2099 4.7738 37 1 1.9845 0.5678 5.8707 38 1 1.6796 -0.8529 2.7673 39 1 3.2364 -0.0714 2.3741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848236735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = -52.126357 kcal Electronic energy + Delta-G solvation = -23693.189525 eV Core-core repulsion = 20181.940101 eV Total energy + Delta-G solvation = -3511.249424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45729 -39.74924 -37.42317 -34.99419 -34.21599 -33.05209 -32.26550 -30.49149 -29.55876 -27.88659 -26.71848 -25.22275 -23.98047 -21.73844 -21.66228 -20.19989 -19.69719 -18.22298 -17.31811 -16.85837 -16.30966 -16.00497 -15.75110 -15.29732 -14.95078 -14.33050 -14.18066 -13.35522 -13.11526 -12.99335 -12.97062 -12.82418 -12.73551 -12.58322 -12.09375 -12.05565 -11.66686 -11.58223 -11.47767 -11.09874 -10.80735 -10.61336 -10.57669 -10.30247 -10.23000 -9.72766 -9.55791 -9.37415 -8.74971 -8.37986 -7.96395 -7.67996 -6.36950 -4.45416 0.87165 2.30373 2.90364 3.01426 3.09214 3.14863 3.23352 3.26455 3.73290 4.20353 4.81833 4.91115 4.97777 5.00603 5.14247 5.26487 5.53278 5.63955 5.75246 5.78458 5.80133 5.83640 5.87701 6.00181 6.04246 6.11762 6.19721 6.30535 6.46614 6.51840 6.60249 6.69316 6.76663 6.92631 7.11024 7.16598 7.26491 7.65651 7.90697 8.15376 8.53195 8.61379 9.23704 9.34517 10.70454 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.006067 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.510022 B = 4614.160441 C = 6130.750122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.118 4.118 3 C -0.069 4.069 4 C 0.028 3.972 5 C -0.191 4.191 6 C -0.212 4.212 7 C -0.046 4.046 8 O -0.160 6.160 9 C 0.566 3.434 10 O -0.558 6.558 11 N -0.604 5.604 12 C 0.107 3.893 13 C -0.119 4.119 14 C 0.249 3.751 15 O -0.584 6.584 16 C -0.537 4.537 17 H 0.067 0.933 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.094 3.906 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.270 0.730 38 H 0.067 0.933 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 6.514 -7.465 10.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.022 4.022 5 C -0.210 4.210 6 C -0.231 4.231 7 C -0.115 4.115 8 O -0.055 6.055 9 C 0.355 3.645 10 O -0.439 6.439 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.157 4.157 14 C 0.208 3.792 15 O -0.394 6.394 16 C -0.575 4.575 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.535 5.535 20 Si 0.729 3.271 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.028 4.028 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.217 0.783 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.727 5.581 -8.257 10.640 hybrid contribution 0.306 1.504 1.081 1.877 sum -3.421 7.085 -7.176 10.649 Atomic orbital electron populations 1.20734 0.89229 1.02711 1.03046 1.21037 0.97628 0.93306 1.00074 1.20143 0.99009 0.87575 1.02029 1.19770 0.80154 0.95261 1.06979 1.22201 1.00460 0.91202 1.07152 1.21676 0.92255 1.00719 1.08457 1.24187 1.00373 0.80756 1.06137 1.84292 1.23921 1.27360 1.69941 1.16612 0.79302 0.85551 0.82988 1.90824 1.60916 1.60908 1.31281 1.48936 1.55444 1.19568 1.09603 1.22238 0.95577 0.85271 0.98491 1.22784 0.97577 1.01071 0.94236 1.19461 0.85654 0.86357 0.87700 1.86112 1.52136 1.39514 1.61588 1.21542 0.94136 1.21717 1.20105 0.91467 1.25056 0.95271 0.96144 0.96703 1.69632 1.09147 1.36343 1.38390 0.86421 0.80369 0.80143 0.80141 1.20411 1.20959 1.19637 1.23139 1.01871 0.97093 0.80732 0.91680 0.89970 0.90429 0.83449 0.83147 0.83499 0.78273 0.91525 0.91728 0.90538 0.90444 0.76501 0.91960 0.91448 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 8.33 36.00 0.30 -1.24 16 2 C -0.12 -2.07 4.76 -104.29 -0.50 -2.57 16 3 C -0.07 -1.12 9.40 -39.23 -0.37 -1.48 16 4 C 0.03 0.42 6.72 -38.40 -0.26 0.16 16 5 C -0.19 -2.54 10.90 -38.90 -0.42 -2.97 16 6 C -0.21 -2.42 10.87 -39.90 -0.43 -2.85 16 7 C -0.05 -0.51 12.06 29.64 0.36 -0.15 16 8 O -0.16 -2.24 7.26 4.66 0.03 -2.20 16 9 C 0.57 11.44 6.86 -15.00 -0.10 11.33 16 10 O -0.56 -12.57 17.32 5.12 0.09 -12.49 16 11 N -0.60 -12.38 3.33 -173.94 -0.58 -12.96 16 12 C 0.11 2.07 6.92 -2.53 -0.02 2.06 16 13 C -0.12 -2.39 6.22 -24.58 -0.15 -2.54 16 14 C 0.25 5.78 0.86 -89.94 -0.08 5.71 16 15 O -0.58 -14.29 13.09 -35.23 -0.46 -14.75 16 16 C -0.54 -13.40 8.12 -34.44 -0.28 -13.68 16 17 H 0.07 1.67 7.77 -52.48 -0.41 1.26 16 18 C 0.07 1.76 5.27 -17.82 -0.09 1.67 16 19 N -0.90 -22.40 10.97 55.43 0.61 -21.79 16 20 Si 0.90 19.60 29.54 -169.99 -5.02 14.57 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C 0.09 2.06 4.91 -3.07 -0.02 2.05 16 25 H 0.06 0.99 7.97 -51.93 -0.41 0.57 16 26 H 0.08 1.23 7.25 -51.93 -0.38 0.86 16 27 H 0.08 1.09 7.41 -51.93 -0.38 0.70 16 28 H 0.15 2.28 8.06 -52.49 -0.42 1.85 16 29 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.20 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.07 1.22 7.99 -51.93 -0.42 0.81 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.38 9.55 7.18 45.56 0.33 9.88 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.07 1.57 8.01 -51.93 -0.42 1.16 16 39 H 0.07 1.56 7.73 -51.92 -0.40 1.16 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -28.54 331.19 -6.98 -35.52 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -4.58 Total: 13.60 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.06 Total: -4.51 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.03 Total: -34.75 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.34 Total: -29.43 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.54 -6.98 -35.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848236735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.603 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds