Wall clock time and date at job start Tue Mar 31 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35629 * 119.99949 * 2 1 4 4 C 1.41599 * 120.00039 * 354.45435 * 3 2 1 5 5 C 1.37953 * 126.10216 * 185.02773 * 4 3 2 6 6 C 1.40322 * 106.52742 * 179.84919 * 5 4 3 7 7 C 1.35154 * 107.20369 * 0.40456 * 6 5 4 8 8 O 1.34026 * 109.03711 * 359.74511 * 7 6 5 9 9 C 1.41555 * 119.99938 * 179.97438 * 2 1 3 10 10 O 1.21780 * 119.99494 * 80.12151 * 9 2 1 11 11 N 1.34777 * 120.00127 * 260.11515 * 9 2 1 12 12 C 1.47423 * 125.64462 * 175.11374 * 11 9 2 13 13 C 1.54915 * 104.83077 * 155.91252 * 12 11 9 14 14 C 1.55163 * 101.57826 * 37.00971 * 13 12 11 15 15 O 1.42892 * 110.72000 * 82.86663 * 14 13 12 16 16 C 1.50702 * 110.71710 * 205.96038 * 14 13 12 17 17 H 1.08009 * 119.99915 * 357.55540 * 16 14 13 18 18 C 1.37876 * 120.00051 * 177.56222 * 16 14 13 19 19 N 1.31511 * 119.99823 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99893 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47135 * 90.00053 * 20 18 16 22 22 H 1.48496 * 109.46929 * 209.99551 * 20 18 16 23 23 H 1.48500 * 109.47301 * 329.99716 * 20 18 16 24 24 C 1.47017 * 125.65061 * 355.16543 * 11 9 2 25 25 H 1.09004 * 109.47630 * 184.37863 * 1 2 3 26 26 H 1.09001 * 109.47726 * 304.38395 * 1 2 3 27 27 H 1.09001 * 109.47186 * 64.38010 * 1 2 3 28 28 H 1.08000 * 119.99978 * 174.45042 * 3 2 1 29 29 H 1.07993 * 126.73662 * 359.97438 * 5 4 3 30 30 H 1.07993 * 126.40043 * 180.12973 * 6 5 4 31 31 H 1.08004 * 125.48346 * 179.76643 * 7 6 5 32 32 H 1.08997 * 110.36875 * 37.07540 * 12 11 9 33 33 H 1.09004 * 110.36732 * 274.74526 * 12 11 9 34 34 H 1.08997 * 111.00084 * 278.93890 * 13 12 11 35 35 H 1.09004 * 111.03648 * 155.09635 * 13 12 11 36 36 H 0.96703 * 114.00300 * 180.02562 * 15 14 13 37 37 H 0.97001 * 119.99935 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.88335 * 61.59767 * 24 11 9 39 39 H 1.09007 * 109.87765 * 300.43473 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4820 2.3980 -0.1185 5 6 2.0460 3.6521 -0.2301 6 6 0.9815 4.5613 -0.3259 7 6 -0.1629 3.8452 -0.2613 8 8 0.1409 2.5458 -0.1368 9 6 2.2147 -1.2259 0.0005 10 8 2.3624 -1.8441 -1.0382 11 7 2.7252 -1.7088 1.1506 12 6 3.3916 -3.0137 1.3137 13 6 4.3031 -2.8411 2.5544 14 6 3.4252 -1.9403 3.4629 15 8 2.4791 -2.7257 4.1909 16 6 4.2834 -1.1350 4.4042 17 1 5.3554 -1.2669 4.4043 18 6 3.7001 -0.2300 5.2655 19 7 2.3948 -0.0692 5.2651 20 14 4.7638 0.7676 6.4328 21 1 5.1695 2.0344 5.7726 22 1 3.9928 1.0760 7.6639 23 1 5.9747 -0.0143 6.7899 24 6 2.7087 -1.0222 2.4505 25 1 -0.3634 -1.0247 0.0785 26 1 -0.3634 0.5803 0.8481 27 1 -0.3633 0.4444 -0.9266 28 1 3.2613 1.1768 0.0905 29 1 3.0998 3.8876 -0.2434 30 1 1.0617 5.6335 -0.4274 31 1 -1.1616 4.2543 -0.3037 32 1 3.9899 -3.2468 0.4329 33 1 2.6543 -3.7968 1.4907 34 1 5.2336 -2.3393 2.2888 35 1 4.5015 -3.8012 3.0308 36 1 1.9053 -2.2099 4.7738 37 1 1.9845 0.5678 5.8707 38 1 1.6796 -0.8529 2.7673 39 1 3.2364 -0.0714 2.3741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848236735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:00 Heat of formation + Delta-G solvation = -70.013170 kcal Electronic energy + Delta-G solvation = -23693.965155 eV Core-core repulsion = 20181.940101 eV Total energy + Delta-G solvation = -3512.025054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.45303 -41.35093 -39.13964 -36.31592 -36.00461 -34.18187 -34.03916 -32.03542 -30.77725 -29.63917 -27.91121 -27.01212 -25.44637 -23.13997 -22.66620 -21.47901 -21.35269 -19.70680 -19.08507 -18.16065 -17.77308 -17.33569 -17.02944 -16.72480 -16.65888 -16.00457 -15.57536 -14.92140 -14.81023 -14.74451 -14.11947 -14.01781 -13.95227 -13.60421 -13.52478 -13.48199 -13.43008 -13.18366 -12.82443 -12.75280 -12.51091 -12.31345 -12.29504 -12.09809 -11.45082 -11.19134 -11.14767 -10.68930 -10.63181 -10.26174 -9.65041 -8.78265 -8.25176 -6.40205 -0.29838 1.30464 1.39041 1.42805 1.46889 1.55056 1.89790 2.11772 2.18089 2.40115 3.01049 3.51557 3.80980 3.90019 4.01900 4.06861 4.11973 4.17116 4.17925 4.31190 4.48552 4.59281 4.63679 4.70373 4.75158 4.85369 4.97895 4.98089 5.06127 5.08717 5.17517 5.26663 5.32733 5.36068 5.46686 5.62765 5.75551 6.04236 6.16812 6.49508 6.65137 6.97097 7.31103 7.39790 8.80758 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.006067 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.510022 B = 4614.160441 C = 6130.750122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.160 4.160 3 C -0.048 4.048 4 C -0.018 4.018 5 C -0.181 4.181 6 C -0.224 4.224 7 C -0.030 4.030 8 O -0.172 6.172 9 C 0.572 3.428 10 O -0.585 6.585 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.111 4.111 14 C 0.233 3.767 15 O -0.590 6.590 16 C -0.557 4.557 17 H 0.064 0.936 18 C 0.035 3.965 19 N -0.910 5.910 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.117 3.883 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.177 0.823 31 H 0.243 0.757 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.379 0.621 37 H 0.272 0.728 38 H 0.049 0.951 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 8.428 -7.653 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.163 4.163 3 C -0.067 4.067 4 C -0.067 4.067 5 C -0.201 4.201 6 C -0.243 4.243 7 C -0.098 4.098 8 O -0.068 6.068 9 C 0.362 3.638 10 O -0.468 6.468 11 N -0.339 5.339 12 C -0.015 4.015 13 C -0.149 4.149 14 C 0.193 3.807 15 O -0.399 6.399 16 C -0.595 4.595 17 H 0.082 0.918 18 C -0.167 4.167 19 N -0.549 5.549 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.196 1.196 24 C -0.005 4.005 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.165 0.835 29 H 0.181 0.819 30 H 0.194 0.806 31 H 0.259 0.741 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.831 7.484 -8.451 11.921 hybrid contribution 0.320 1.070 1.120 1.582 sum -3.512 8.554 -7.331 11.800 Atomic orbital electron populations 1.20622 0.87890 1.02305 1.03545 1.20986 0.98559 0.92501 1.04265 1.20238 0.99160 0.88009 0.99250 1.19699 0.80928 0.95284 1.10765 1.22613 1.01798 0.91031 1.04616 1.22085 0.91550 1.02073 1.08583 1.25170 1.02307 0.79607 1.02706 1.84278 1.23419 1.28994 1.70149 1.16972 0.78564 0.86020 0.82210 1.90788 1.61921 1.62101 1.32002 1.48980 1.55792 1.19810 1.09273 1.22279 0.95581 0.84917 0.98742 1.22758 0.97437 1.01000 0.93720 1.19687 0.85858 0.87204 0.87977 1.86106 1.52322 1.39817 1.61688 1.21764 0.94251 1.22469 1.21022 0.91766 1.25671 0.96272 0.96881 0.97850 1.69710 1.10032 1.36507 1.38660 0.85557 0.78904 0.78836 0.78370 1.20078 1.20816 1.19600 1.22697 1.00268 0.96384 0.81181 0.92359 0.90050 0.89352 0.83507 0.81890 0.80606 0.74126 0.90219 0.91759 0.89715 0.89536 0.77102 0.91878 0.93272 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.69 8.33 71.23 0.59 -2.10 16 2 C -0.16 -5.74 4.76 -19.65 -0.09 -5.83 16 3 C -0.05 -1.56 9.40 22.49 0.21 -1.35 16 4 C -0.02 -0.52 6.72 23.03 0.15 -0.36 16 5 C -0.18 -4.46 10.90 22.71 0.25 -4.22 16 6 C -0.22 -4.38 10.87 22.07 0.24 -4.14 16 7 C -0.03 -0.56 12.06 67.11 0.81 0.25 16 8 O -0.17 -4.55 7.26 -6.24 -0.05 -4.59 16 9 C 0.57 23.48 6.86 85.06 0.58 24.06 16 10 O -0.59 -26.71 17.32 -4.61 -0.08 -26.79 16 11 N -0.61 -25.20 3.33 -822.41 -2.74 -27.94 16 12 C 0.11 4.14 6.92 86.86 0.60 4.74 16 13 C -0.11 -4.43 6.22 31.99 0.20 -4.23 16 14 C 0.23 10.89 0.86 -10.35 -0.01 10.88 16 15 O -0.59 -29.20 13.09 -148.98 -1.95 -31.15 16 16 C -0.56 -27.80 8.12 25.60 0.21 -27.59 16 17 H 0.06 3.17 7.77 -2.91 -0.02 3.15 16 18 C 0.03 1.71 5.27 84.65 0.45 2.15 16 19 N -0.91 -45.60 10.97 21.45 0.24 -45.36 16 20 Si 0.96 39.73 29.54 68.60 2.03 41.75 16 21 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.12 5.26 4.91 86.73 0.43 5.69 16 25 H 0.06 1.81 7.97 -2.38 -0.02 1.79 16 26 H 0.08 2.46 7.25 -2.39 -0.02 2.45 16 27 H 0.09 2.46 7.41 -2.39 -0.02 2.44 16 28 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.24 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.08 2.87 7.99 -2.39 -0.02 2.85 16 33 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.08 3.20 8.04 -2.39 -0.02 3.18 16 35 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.38 19.21 7.18 -74.06 -0.53 18.68 16 37 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 38 H 0.05 2.36 8.01 -2.39 -0.02 2.34 16 39 H 0.06 2.62 7.73 -2.38 -0.02 2.60 16 Total: -1.00 -60.61 331.19 2.60 -58.01 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: 0.53 Total: 38.11 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.62 Total: -2.05 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -2.50 Total: -73.30 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -2.08 Total: -62.53 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -60.61 2.60 -58.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848236735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.004 kcal (2) G-P(sol) polarization free energy of solvation -60.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds