Wall clock time and date at job start Tue Mar 31 2020 07:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46850 * 2 1 4 4 C 1.50704 * 109.46729 * 240.00746 * 2 1 3 5 5 H 1.08007 * 119.99502 * 239.99562 * 4 2 1 6 6 C 1.37872 * 120.00745 * 59.99624 * 4 2 1 7 7 N 1.31523 * 119.99539 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00655 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47215 * 89.99519 * 8 6 4 10 10 H 1.48500 * 109.47451 * 210.00221 * 8 6 4 11 11 H 1.48505 * 109.46955 * 330.00184 * 8 6 4 12 12 C 1.52995 * 109.47515 * 120.00766 * 2 1 3 13 13 S 1.81398 * 109.46547 * 299.99799 * 12 2 1 14 14 O 1.42101 * 110.54412 * 68.37928 * 13 12 2 15 15 O 1.42102 * 110.54540 * 291.62514 * 13 12 2 16 16 N 1.65600 * 104.44955 * 180.02562 * 13 12 2 17 17 C 1.46499 * 120.00054 * 65.00031 * 16 13 12 18 18 H 1.08999 * 109.47182 * 25.00248 * 17 16 13 19 19 C 1.53005 * 109.46953 * 265.00006 * 17 16 13 20 20 O 1.42893 * 109.47304 * 295.66882 * 19 17 16 21 21 C 1.53000 * 109.47287 * 145.00396 * 17 16 13 22 22 C 1.53001 * 117.51558 * 226.12147 * 21 17 16 23 23 C 1.53001 * 60.00079 * 107.48280 * 22 21 17 24 24 H 1.09001 * 109.47200 * 299.99585 * 1 2 3 25 25 H 1.09000 * 109.47326 * 59.99865 * 1 2 3 26 26 H 1.09008 * 109.46939 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47266 * 300.00172 * 3 2 1 29 29 H 1.09005 * 109.47109 * 60.00684 * 3 2 1 30 30 H 0.96997 * 119.99442 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47186 * 180.02562 * 12 2 1 32 32 H 1.08992 * 109.47297 * 59.99703 * 12 2 1 33 33 H 0.97001 * 120.00308 * 245.00067 * 16 13 12 34 34 H 1.08996 * 109.46727 * 55.67603 * 19 17 16 35 35 H 1.09002 * 109.47133 * 175.67060 * 19 17 16 36 36 H 0.96699 * 114.00123 * 179.97438 * 20 19 17 37 37 H 1.09003 * 115.55093 * 80.42100 * 21 17 16 38 38 H 1.09001 * 117.49974 * 214.96955 * 22 21 17 39 39 H 1.08997 * 117.49883 * 359.97438 * 22 21 17 40 40 H 1.09007 * 117.49438 * 252.51488 * 23 22 21 41 41 H 1.08994 * 117.50436 * 107.48592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.3447 -2.1613 -4.4125 10 1 2.4870 -0.1398 -5.1122 11 1 3.6307 -1.7563 -3.7122 12 6 2.0401 -0.7214 1.2491 13 16 1.4354 0.1337 2.7302 14 8 0.0281 -0.0186 2.8543 15 8 2.0480 1.4099 2.8543 16 7 2.0542 -0.7402 3.9934 17 6 3.5028 -0.7965 4.2052 18 1 3.9683 0.0876 3.7696 19 6 4.0675 -2.0518 3.5371 20 8 3.5331 -3.2129 4.1761 21 6 3.7975 -0.8411 5.7059 22 6 4.8907 0.0870 6.2394 23 6 3.4202 0.3871 6.5367 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 0.7093 1.1620 -3.4844 31 1 3.1300 -0.7209 1.2493 32 1 1.6768 -1.7490 1.2490 33 1 1.4577 -1.2149 4.5932 34 1 3.7913 -2.0577 2.4827 35 1 5.1537 -2.0545 3.6281 36 1 3.8483 -4.0474 3.8029 37 1 3.6932 -1.8186 6.1766 38 1 5.5056 -0.2800 7.0612 39 1 5.4004 0.7291 5.5212 40 1 2.9623 1.2269 6.0140 41 1 3.0675 0.2174 7.5540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849380156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:55 Heat of formation + Delta-G solvation = -103.292323 kcal Electronic energy + Delta-G solvation = -23031.084027 eV Core-core repulsion = 19653.059832 eV Total energy + Delta-G solvation = -3378.024195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.70376 -36.49592 -36.35384 -36.23564 -35.28691 -33.88698 -31.69026 -28.58381 -26.72625 -25.72379 -25.23987 -23.50251 -22.38039 -20.62227 -19.56985 -18.79298 -17.64071 -17.04715 -16.41420 -15.95840 -15.66920 -15.20897 -14.92480 -14.76972 -14.32846 -13.87259 -13.20476 -13.09240 -13.00180 -12.52468 -12.37135 -12.07462 -11.93910 -11.58484 -11.44650 -11.23720 -11.08969 -11.06816 -10.94876 -10.71287 -10.47528 -10.39741 -10.30092 -10.23960 -10.15659 -9.96179 -9.66157 -9.62807 -9.20388 -8.68467 -8.41641 -6.04930 -4.17116 0.88132 3.14968 3.24107 3.31568 3.32830 3.79976 4.17341 4.29178 4.36766 4.45837 4.74332 4.81010 4.93602 5.07223 5.17963 5.21057 5.27965 5.42721 5.50591 5.56924 5.68784 5.71942 5.84073 6.06227 6.11000 6.24910 6.36658 6.68820 6.78813 6.90245 7.02589 7.24187 7.30647 7.49468 7.53261 7.66042 7.97014 8.08105 8.31429 8.81116 9.48337 10.96377 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.005070 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.247979 B = 5521.702652 C = 6023.811087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.584 4.584 13 S 2.592 3.408 14 O -0.964 6.964 15 O -0.966 6.966 16 N -1.115 6.115 17 C 0.181 3.819 18 H 0.103 0.897 19 C 0.052 3.948 20 O -0.564 6.564 21 C -0.152 4.152 22 C -0.177 4.177 23 C -0.176 4.176 24 H 0.027 0.973 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.415 0.585 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.377 0.623 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -5.101 13.771 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.717 4.717 13 S 2.690 3.310 14 O -0.955 6.955 15 O -0.956 6.956 16 N -0.871 5.871 17 C 0.073 3.927 18 H 0.121 0.879 19 C -0.028 4.028 20 O -0.369 6.369 21 C -0.172 4.172 22 C -0.214 4.214 23 C -0.213 4.213 24 H 0.046 0.954 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.224 0.776 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.477 -3.629 13.984 15.833 hybrid contribution 0.808 -1.728 -1.283 2.298 sum 7.285 -5.357 12.701 15.591 Atomic orbital electron populations 1.22273 0.96908 1.00653 1.02310 1.17927 0.92845 0.92184 0.89059 1.22275 0.99640 0.97835 1.02387 1.20925 1.31742 1.12033 0.89411 0.92389 1.24939 0.94908 0.94965 0.98924 1.69806 1.36312 1.22510 1.23479 0.86538 0.79133 0.79378 0.82577 1.20654 1.21126 1.20009 1.30640 1.10846 1.13018 1.17240 1.05619 0.74461 0.75268 0.75644 1.93553 1.29501 1.86689 1.85721 1.93537 1.78222 1.38239 1.85593 1.55768 1.13389 1.70643 1.47283 1.20427 0.80991 0.96582 0.94698 0.87937 1.22903 0.97190 0.86258 0.96447 1.86451 1.72799 1.15898 1.61789 1.22377 1.04459 0.96316 0.94017 1.23014 0.91873 1.03030 1.03520 1.22955 0.97784 0.99780 1.00751 0.95384 0.88653 0.94468 0.94525 0.88652 0.95299 0.92736 0.86676 0.86209 0.75142 0.92269 0.92472 0.77597 0.86515 0.88722 0.88495 0.88192 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 4 C -0.50 -12.99 8.01 -34.44 -0.28 -13.26 16 5 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -23.97 9.35 55.43 0.52 -23.45 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 C -0.58 -11.23 4.06 37.16 0.15 -11.08 16 13 S 2.59 48.29 4.47 -107.50 -0.48 47.81 16 14 O -0.96 -20.69 15.70 -57.54 -0.90 -21.59 16 15 O -0.97 -20.08 15.01 -57.54 -0.86 -20.94 16 16 N -1.12 -15.89 5.26 -4.89 -0.03 -15.91 16 17 C 0.18 2.23 2.76 -67.93 -0.19 2.04 16 18 H 0.10 1.29 7.28 -51.93 -0.38 0.91 16 19 C 0.05 0.55 6.86 37.16 0.25 0.81 16 20 O -0.56 -5.76 12.68 -35.23 -0.45 -6.21 16 21 C -0.15 -1.64 5.09 -90.62 -0.46 -2.10 16 22 C -0.18 -1.67 10.18 -26.73 -0.27 -1.94 16 23 C -0.18 -1.89 10.21 -26.73 -0.27 -2.16 16 24 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 25 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 26 H 0.04 0.88 8.14 -51.92 -0.42 0.45 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 29 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.11 1.96 6.86 -51.93 -0.36 1.60 16 32 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 33 H 0.42 5.45 8.80 -34.47 -0.30 5.15 16 34 H 0.06 0.66 5.73 -51.93 -0.30 0.36 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.38 2.35 9.12 45.56 0.42 2.76 16 37 H 0.12 1.24 7.47 -51.93 -0.39 0.86 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -32.05 331.17 -8.32 -40.37 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.43 Total: 11.21 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: -0.66 Total: -31.67 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.49 Total: -39.36 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -2.21 Total: -48.73 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 48.29 SS G_CDS: -0.48 Total: 47.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.05 -8.32 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849380156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.926 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds