Wall clock time and date at job start Tue Mar 31 2020 07:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46850 * 2 1 4 4 C 1.50704 * 109.46729 * 240.00746 * 2 1 3 5 5 H 1.08007 * 119.99502 * 239.99562 * 4 2 1 6 6 C 1.37872 * 120.00745 * 59.99624 * 4 2 1 7 7 N 1.31523 * 119.99539 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00655 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47215 * 89.99519 * 8 6 4 10 10 H 1.48500 * 109.47451 * 210.00221 * 8 6 4 11 11 H 1.48505 * 109.46955 * 330.00184 * 8 6 4 12 12 C 1.52995 * 109.47515 * 120.00766 * 2 1 3 13 13 S 1.81398 * 109.46547 * 299.99799 * 12 2 1 14 14 O 1.42101 * 110.54412 * 68.37928 * 13 12 2 15 15 O 1.42102 * 110.54540 * 291.62514 * 13 12 2 16 16 N 1.65600 * 104.44955 * 180.02562 * 13 12 2 17 17 C 1.46499 * 120.00054 * 65.00031 * 16 13 12 18 18 H 1.08999 * 109.47182 * 25.00248 * 17 16 13 19 19 C 1.53005 * 109.46953 * 265.00006 * 17 16 13 20 20 O 1.42893 * 109.47304 * 295.66882 * 19 17 16 21 21 C 1.53000 * 109.47287 * 145.00396 * 17 16 13 22 22 C 1.53001 * 117.51558 * 226.12147 * 21 17 16 23 23 C 1.53001 * 60.00079 * 107.48280 * 22 21 17 24 24 H 1.09001 * 109.47200 * 299.99585 * 1 2 3 25 25 H 1.09000 * 109.47326 * 59.99865 * 1 2 3 26 26 H 1.09008 * 109.46939 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47266 * 300.00172 * 3 2 1 29 29 H 1.09005 * 109.47109 * 60.00684 * 3 2 1 30 30 H 0.96997 * 119.99442 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47186 * 180.02562 * 12 2 1 32 32 H 1.08992 * 109.47297 * 59.99703 * 12 2 1 33 33 H 0.97001 * 120.00308 * 245.00067 * 16 13 12 34 34 H 1.08996 * 109.46727 * 55.67603 * 19 17 16 35 35 H 1.09002 * 109.47133 * 175.67060 * 19 17 16 36 36 H 0.96699 * 114.00123 * 179.97438 * 20 19 17 37 37 H 1.09003 * 115.55093 * 80.42100 * 21 17 16 38 38 H 1.09001 * 117.49974 * 214.96955 * 22 21 17 39 39 H 1.08997 * 117.49883 * 359.97438 * 22 21 17 40 40 H 1.09007 * 117.49438 * 252.51488 * 23 22 21 41 41 H 1.08994 * 117.50436 * 107.48592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.3447 -2.1613 -4.4125 10 1 2.4870 -0.1398 -5.1122 11 1 3.6307 -1.7563 -3.7122 12 6 2.0401 -0.7214 1.2491 13 16 1.4354 0.1337 2.7302 14 8 0.0281 -0.0186 2.8543 15 8 2.0480 1.4099 2.8543 16 7 2.0542 -0.7402 3.9934 17 6 3.5028 -0.7965 4.2052 18 1 3.9683 0.0876 3.7696 19 6 4.0675 -2.0518 3.5371 20 8 3.5331 -3.2129 4.1761 21 6 3.7975 -0.8411 5.7059 22 6 4.8907 0.0870 6.2394 23 6 3.4202 0.3871 6.5367 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 0.7093 1.1620 -3.4844 31 1 3.1300 -0.7209 1.2493 32 1 1.6768 -1.7490 1.2490 33 1 1.4577 -1.2149 4.5932 34 1 3.7913 -2.0577 2.4827 35 1 5.1537 -2.0545 3.6281 36 1 3.8483 -4.0474 3.8029 37 1 3.6932 -1.8186 6.1766 38 1 5.5056 -0.2800 7.0612 39 1 5.4004 0.7291 5.5212 40 1 2.9623 1.2269 6.0140 41 1 3.0675 0.2174 7.5540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849380156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:54 Heat of formation + Delta-G solvation = -127.804933 kcal Electronic energy + Delta-G solvation = -23032.146973 eV Core-core repulsion = 19653.059832 eV Total energy + Delta-G solvation = -3379.087142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58251 -38.14128 -38.07699 -37.07309 -36.88174 -34.92543 -33.63501 -29.54798 -28.39582 -27.69522 -27.23877 -24.36568 -23.15615 -21.58278 -21.31067 -20.25736 -18.87821 -18.12908 -17.83756 -17.48342 -16.95528 -16.64329 -16.47983 -16.07686 -15.32369 -15.07871 -14.69605 -14.59830 -14.39902 -14.05092 -13.84822 -13.63508 -13.12053 -13.02366 -12.90726 -12.87627 -12.76215 -12.49904 -12.35335 -12.18697 -12.15794 -12.08621 -11.94316 -11.57173 -11.46363 -11.25859 -11.05743 -10.76719 -10.63832 -10.41126 -10.29286 -8.02247 -6.20962 -0.61076 1.44929 1.46813 1.55124 1.85700 2.44822 2.84816 2.94655 3.20177 3.32571 3.42242 3.60517 3.93088 3.99822 4.10222 4.16772 4.22430 4.34188 4.47875 4.56257 4.64393 4.72077 4.83689 4.86399 4.87158 5.00014 5.06817 5.07382 5.13172 5.30778 5.37760 5.40114 5.50471 5.65087 5.96810 6.10922 6.14991 6.34119 6.83783 6.98336 7.47454 8.97736 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.005070 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.247979 B = 5521.702652 C = 6023.811087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.160 4.160 4 C -0.515 4.515 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.265 1.265 12 C -0.584 4.584 13 S 2.610 3.390 14 O -0.996 6.996 15 O -0.990 6.990 16 N -1.101 6.101 17 C 0.168 3.832 18 H 0.098 0.902 19 C 0.053 3.947 20 O -0.576 6.576 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.189 4.189 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.422 0.578 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.395 0.605 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.087 -6.767 14.732 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 C -0.218 4.218 4 C -0.554 4.554 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.189 1.189 12 C -0.716 4.716 13 S 2.707 3.293 14 O -0.986 6.986 15 O -0.980 6.980 16 N -0.860 5.860 17 C 0.061 3.939 18 H 0.116 0.884 19 C -0.026 4.026 20 O -0.384 6.384 21 C -0.173 4.173 22 C -0.199 4.199 23 C -0.226 4.226 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.245 0.755 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.273 -5.316 14.944 17.889 hybrid contribution 0.267 -1.217 -1.509 1.956 sum 8.540 -6.532 13.435 17.208 Atomic orbital electron populations 1.22217 0.98008 1.00408 1.01222 1.17924 0.92157 0.92216 0.90948 1.22205 0.99963 0.98308 1.01287 1.21278 1.31611 1.12246 0.90232 0.91664 1.25685 0.95206 0.95624 1.01709 1.69954 1.37283 1.23707 1.23812 0.85605 0.78914 0.78179 0.79201 1.20547 1.21411 1.18928 1.30555 1.12400 1.13295 1.15386 1.04817 0.73514 0.75000 0.75950 1.93502 1.31721 1.87131 1.86289 1.93502 1.78453 1.40002 1.86047 1.55354 1.14722 1.70151 1.45738 1.20739 0.79345 0.97651 0.96197 0.88425 1.22835 0.98458 0.85664 0.95684 1.86405 1.73210 1.16694 1.62080 1.22323 1.05544 0.96574 0.92834 1.23123 0.91253 1.01819 1.03732 1.22982 0.99191 0.99173 1.01300 0.95154 0.91034 0.94210 0.93818 0.91121 0.95005 0.92980 0.84323 0.84570 0.74246 0.92847 0.90015 0.75526 0.85931 0.86584 0.88404 0.90349 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.05 7.77 71.98 0.56 -7.49 16 2 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 3 C -0.16 -7.85 7.77 71.98 0.56 -7.29 16 4 C -0.51 -26.22 8.01 25.60 0.21 -26.02 16 5 H 0.07 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 0.89 5.15 84.65 0.44 1.33 16 7 N -0.91 -50.06 9.35 21.45 0.20 -49.86 16 8 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 C -0.58 -21.61 4.06 71.98 0.29 -21.32 16 13 S 2.61 95.46 4.47 -56.49 -0.25 95.21 16 14 O -1.00 -42.60 15.70 -127.65 -2.00 -44.60 16 15 O -0.99 -40.91 15.01 -127.65 -1.92 -42.83 16 16 N -1.10 -29.78 5.26 -169.38 -0.89 -30.67 16 17 C 0.17 3.79 2.76 44.99 0.12 3.91 16 18 H 0.10 2.30 7.28 -2.39 -0.02 2.28 16 19 C 0.05 0.98 6.86 71.98 0.49 1.47 16 20 O -0.58 -10.01 12.68 -148.98 -1.89 -11.89 16 21 C -0.15 -2.94 5.09 -10.79 -0.05 -3.00 16 22 C -0.16 -2.63 10.18 30.59 0.31 -2.32 16 23 C -0.19 -3.77 10.21 30.60 0.31 -3.46 16 24 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 25 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 26 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 29 H 0.03 1.50 5.46 -2.38 -0.01 1.49 16 30 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.14 4.41 6.86 -2.39 -0.02 4.40 16 32 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 33 H 0.42 10.48 8.80 -96.74 -0.85 9.63 16 34 H 0.05 1.04 5.73 -2.39 -0.01 1.03 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.40 3.67 9.12 -74.06 -0.68 2.99 16 37 H 0.12 2.25 7.47 -2.39 -0.02 2.24 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16 40 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.01 331.17 -1.99 -70.00 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.47 Total: 32.05 kcal Atomic # 6 Polarization: -64.11 SS G_CDS: 3.21 Total: -60.90 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -0.69 Total: -80.53 kcal Atomic # 8 Polarization: -93.52 SS G_CDS: -5.81 Total: -99.33 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 95.46 SS G_CDS: -0.25 Total: 95.21 kcal Total: -68.01 -1.99 -70.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849380156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.804 kcal (2) G-P(sol) polarization free energy of solvation -68.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds