Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 C 1.50700 * 109.46990 * 120.00452 * 2 1 3 5 5 C 1.38386 * 119.92463 * 299.97153 * 4 2 1 6 6 C 1.38341 * 120.30391 * 180.02562 * 5 4 2 7 7 C 1.37973 * 120.15286 * 359.97438 * 6 5 4 8 8 C 1.39609 * 119.84022 * 0.02562 * 7 6 5 9 9 C 1.47727 * 120.14336 * 179.97438 * 8 7 6 10 10 O 1.21472 * 120.00093 * 180.02562 * 9 8 7 11 11 O 1.34709 * 120.00449 * 0.04738 * 9 8 7 12 12 C 1.45200 * 117.00295 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47136 * 180.02562 * 12 11 9 14 14 O 1.21296 * 120.00141 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00242 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99917 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00507 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99221 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47155 * 60.00068 * 20 18 16 22 22 H 1.48507 * 109.46626 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47220 * 299.99943 * 20 18 16 24 24 C 1.37925 * 119.92550 * 119.99962 * 4 2 1 25 25 H 1.08999 * 109.46954 * 299.99342 * 1 2 3 26 26 H 1.09004 * 109.47307 * 59.99690 * 1 2 3 27 27 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46699 * 240.00006 * 2 1 3 29 29 H 1.08998 * 109.47335 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47198 * 300.00376 * 3 2 1 31 31 H 1.09006 * 109.46789 * 60.00063 * 3 2 1 32 32 H 1.07995 * 119.85050 * 0.02831 * 5 4 2 33 33 H 1.08001 * 119.92464 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.07935 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.46952 * 299.99959 * 12 11 9 36 36 H 1.08997 * 109.47029 * 60.00108 * 12 11 9 37 37 H 0.97005 * 120.00244 * 0.02562 * 15 13 12 38 38 H 0.97006 * 119.99033 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.07484 * 359.69688 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6975 -0.2361 2.4866 6 6 2.1547 -0.8819 3.6213 7 6 2.9481 -2.0050 3.5074 8 6 3.2896 -2.4889 2.2432 9 6 4.1392 -3.6905 2.1135 10 8 4.4352 -4.1090 1.0122 11 8 4.5853 -4.3223 3.2164 12 6 5.4149 -5.4966 3.0133 13 6 5.8159 -6.0656 4.3499 14 8 5.4399 -5.5336 5.3730 15 7 6.5931 -7.1651 4.4084 16 6 6.9583 -7.6825 5.6243 17 1 6.6229 -7.2093 6.5353 18 6 7.7601 -8.8158 5.6847 19 7 8.1686 -9.3913 4.5762 20 14 8.2571 -9.5211 7.3415 21 1 7.0401 -9.9017 8.1027 22 1 9.1060 -10.7217 7.1337 23 1 9.0197 -8.5011 8.1051 24 6 2.8251 -1.8318 1.1020 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8901 32 1 1.0764 0.6423 2.5815 33 1 1.8893 -0.5067 4.5987 34 1 3.3047 -2.5080 4.3941 35 1 4.8542 -6.2451 2.4536 36 1 6.3080 -5.2182 2.4539 37 1 6.8947 -7.5900 3.5902 38 1 8.7280 -10.1827 4.6184 39 1 3.0820 -2.2036 0.1210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850282016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = -112.236905 kcal Electronic energy + Delta-G solvation = -21867.464322 eV Core-core repulsion = 18353.608309 eV Total energy + Delta-G solvation = -3513.856013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53886 -39.34975 -38.06953 -36.06209 -35.61746 -33.99425 -31.47596 -31.33053 -30.24314 -28.30422 -27.46675 -24.98934 -24.15967 -23.09134 -21.59052 -19.88037 -19.57124 -18.06682 -17.65601 -16.87446 -16.27146 -16.21168 -15.64581 -15.37514 -14.90770 -14.48580 -14.15706 -14.08096 -13.94246 -13.80974 -13.77664 -13.01441 -12.75751 -12.45960 -12.32422 -12.13964 -12.11931 -11.71093 -11.61564 -11.46741 -11.15074 -11.10953 -10.94579 -10.48745 -10.42614 -10.40058 -10.27930 -9.59196 -9.18655 -8.94486 -8.51921 -8.07938 -6.49470 -3.91535 0.61459 1.17692 2.57578 2.69712 3.15837 3.23070 3.27878 3.64506 3.74817 4.11332 4.32574 4.46249 4.60398 4.80197 4.86484 4.89609 5.02049 5.11426 5.15618 5.17952 5.24870 5.28932 5.45946 5.49224 5.57976 5.62947 5.69324 5.70887 5.84753 5.87880 5.91039 6.05451 6.19190 6.25296 6.31343 6.61034 6.68807 7.48010 7.84773 7.96626 8.48987 9.07327 9.39727 9.89662 10.67708 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.044355 B = 0.002550 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.113428 B =10977.323927 C =11417.379713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.061 4.061 8 C -0.117 4.117 9 C 0.504 3.496 10 O -0.512 6.512 11 O -0.321 6.321 12 C 0.061 3.939 13 C 0.439 3.561 14 O -0.576 6.576 15 N -0.552 5.552 16 C -0.303 4.303 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.897 5.897 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.055 4.055 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 17.952 -9.063 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.094 4.094 5 C -0.101 4.101 6 C -0.149 4.149 7 C -0.079 4.079 8 C -0.118 4.118 9 C 0.349 3.651 10 O -0.403 6.403 11 O -0.235 6.235 12 C -0.016 4.016 13 C 0.224 3.776 14 O -0.460 6.460 15 N -0.190 5.190 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.762 3.238 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.073 4.073 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.704 17.972 -8.704 23.667 hybrid contribution 0.622 -0.881 0.143 1.088 sum -12.081 17.091 -8.561 22.613 Atomic orbital electron populations 1.21871 0.94169 1.02218 1.01945 1.20127 0.96051 0.96077 0.95203 1.21870 1.01446 0.94939 1.01946 1.19763 0.98642 0.95900 0.95123 1.21232 0.97981 0.99029 0.91866 1.21176 0.98686 0.96027 0.98995 1.21677 0.94224 0.94779 0.97252 1.19128 1.02080 0.95622 0.94965 1.21251 0.78075 0.83225 0.82586 1.90809 1.56067 1.65785 1.27605 1.86584 1.61859 1.40603 1.34453 1.22769 0.94585 0.85525 0.98754 1.19301 0.85115 0.84245 0.88974 1.90555 1.58500 1.61700 1.35292 1.41695 1.43736 1.23698 1.09833 1.19676 1.28663 1.09066 0.85782 0.87664 1.25320 0.96713 0.96559 0.99186 1.69614 1.35524 1.21512 1.27125 0.85850 0.78684 0.78183 0.81119 1.19754 1.20872 1.19749 1.21154 0.94484 0.93489 0.98145 0.92421 0.92284 0.92366 0.90150 0.92364 0.92284 0.92421 0.85627 0.85062 0.83725 0.89450 0.89441 0.77133 0.91573 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.01 37.16 0.33 -0.58 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.70 16 3 C -0.14 -0.92 9.01 37.16 0.33 -0.58 16 4 C -0.09 -0.91 4.78 -104.68 -0.50 -1.41 16 5 C -0.08 -0.74 8.71 -39.49 -0.34 -1.08 16 6 C -0.13 -1.30 10.03 -39.64 -0.40 -1.70 16 7 C -0.06 -0.78 9.62 -39.17 -0.38 -1.15 16 8 C -0.12 -1.65 5.87 -104.98 -0.62 -2.26 16 9 C 0.50 8.66 7.90 34.61 0.27 8.94 16 10 O -0.51 -9.49 16.14 -19.24 -0.31 -9.80 16 11 O -0.32 -6.20 9.01 -47.19 -0.43 -6.63 16 12 C 0.06 1.20 5.95 36.01 0.21 1.41 16 13 C 0.44 10.69 7.86 -10.99 -0.09 10.60 16 14 O -0.58 -16.05 16.08 -14.11 -0.23 -16.28 16 15 N -0.55 -14.08 5.29 -10.96 -0.06 -14.14 16 16 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 17 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 19 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 20 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.05 -0.65 9.21 -39.17 -0.36 -1.01 16 25 H 0.06 0.34 7.38 -51.93 -0.38 -0.05 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 7.38 -51.93 -0.38 -0.05 16 32 H 0.13 0.81 7.08 -52.49 -0.37 0.44 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.14 1.95 7.61 -52.49 -0.40 1.55 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.40 9.55 7.90 -40.82 -0.32 9.22 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.14 1.58 7.53 -52.48 -0.40 1.18 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -32.10 341.77 -7.35 -39.46 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.13 Total: 7.44 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.05 Total: 2.50 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.67 Total: -37.59 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.96 Total: -32.71 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.10 -7.35 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850282016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.780 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds