Wall clock time and date at job start Tue Mar 31 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 C 1.50700 * 109.46990 * 120.00452 * 2 1 3 5 5 C 1.38386 * 119.92463 * 299.97153 * 4 2 1 6 6 C 1.38341 * 120.30391 * 180.02562 * 5 4 2 7 7 C 1.37973 * 120.15286 * 359.97438 * 6 5 4 8 8 C 1.39609 * 119.84022 * 0.02562 * 7 6 5 9 9 C 1.47727 * 120.14336 * 179.97438 * 8 7 6 10 10 O 1.21472 * 120.00093 * 180.02562 * 9 8 7 11 11 O 1.34709 * 120.00449 * 0.04738 * 9 8 7 12 12 C 1.45200 * 117.00295 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47136 * 180.02562 * 12 11 9 14 14 O 1.21296 * 120.00141 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00242 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99917 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00507 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99221 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47155 * 60.00068 * 20 18 16 22 22 H 1.48507 * 109.46626 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47220 * 299.99943 * 20 18 16 24 24 C 1.37925 * 119.92550 * 119.99962 * 4 2 1 25 25 H 1.08999 * 109.46954 * 299.99342 * 1 2 3 26 26 H 1.09004 * 109.47307 * 59.99690 * 1 2 3 27 27 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46699 * 240.00006 * 2 1 3 29 29 H 1.08998 * 109.47335 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47198 * 300.00376 * 3 2 1 31 31 H 1.09006 * 109.46789 * 60.00063 * 3 2 1 32 32 H 1.07995 * 119.85050 * 0.02831 * 5 4 2 33 33 H 1.08001 * 119.92464 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.07935 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.46952 * 299.99959 * 12 11 9 36 36 H 1.08997 * 109.47029 * 60.00108 * 12 11 9 37 37 H 0.97005 * 120.00244 * 0.02562 * 15 13 12 38 38 H 0.97006 * 119.99033 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.07484 * 359.69688 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6975 -0.2361 2.4866 6 6 2.1547 -0.8819 3.6213 7 6 2.9481 -2.0050 3.5074 8 6 3.2896 -2.4889 2.2432 9 6 4.1392 -3.6905 2.1135 10 8 4.4352 -4.1090 1.0122 11 8 4.5853 -4.3223 3.2164 12 6 5.4149 -5.4966 3.0133 13 6 5.8159 -6.0656 4.3499 14 8 5.4399 -5.5336 5.3730 15 7 6.5931 -7.1651 4.4084 16 6 6.9583 -7.6825 5.6243 17 1 6.6229 -7.2093 6.5353 18 6 7.7601 -8.8158 5.6847 19 7 8.1686 -9.3913 4.5762 20 14 8.2571 -9.5211 7.3415 21 1 7.0401 -9.9017 8.1027 22 1 9.1060 -10.7217 7.1337 23 1 9.0197 -8.5011 8.1051 24 6 2.8251 -1.8318 1.1020 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8901 32 1 1.0764 0.6423 2.5815 33 1 1.8893 -0.5067 4.5987 34 1 3.3047 -2.5080 4.3941 35 1 4.8542 -6.2451 2.4536 36 1 6.3080 -5.2182 2.4539 37 1 6.8947 -7.5900 3.5902 38 1 8.7280 -10.1827 4.6184 39 1 3.0820 -2.2036 0.1210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850282016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:46 Heat of formation + Delta-G solvation = -130.243930 kcal Electronic energy + Delta-G solvation = -21868.245165 eV Core-core repulsion = 18353.608309 eV Total energy + Delta-G solvation = -3514.636856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82568 -40.46768 -39.87269 -37.55347 -36.32196 -36.05448 -33.44661 -32.36211 -31.11399 -29.91157 -27.93042 -26.77328 -25.37345 -23.95777 -22.55626 -21.48292 -20.89416 -20.10136 -18.80084 -18.18522 -17.77025 -17.65268 -16.97818 -16.47275 -16.30753 -15.90160 -15.79925 -15.54002 -14.73088 -14.71452 -14.54274 -14.52959 -14.03007 -13.74375 -13.56741 -13.30519 -13.05935 -12.94759 -12.87404 -12.63452 -12.50557 -12.13555 -12.01010 -11.93917 -11.93630 -11.62352 -11.59120 -11.52838 -10.54902 -10.14385 -10.07649 -9.78862 -8.53950 -6.04983 -0.38965 0.32601 1.27740 1.36013 1.40000 1.43341 1.54929 1.84268 2.28454 2.72180 2.98660 3.11304 3.54708 3.62177 3.84858 3.95540 4.05884 4.10405 4.17797 4.20464 4.28568 4.34295 4.44024 4.49297 4.78940 4.86930 4.93516 5.03274 5.04392 5.12452 5.21550 5.29711 5.32092 5.35074 5.43063 5.44234 5.59695 5.86425 5.86678 6.41841 6.54577 7.00289 7.36747 7.89988 8.62881 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.044355 B = 0.002550 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.113428 B =10977.323927 C =11417.379713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.089 4.089 5 C -0.069 4.069 6 C -0.125 4.125 7 C -0.076 4.076 8 C -0.142 4.142 9 C 0.504 3.496 10 O -0.532 6.532 11 O -0.337 6.337 12 C 0.071 3.929 13 C 0.437 3.563 14 O -0.616 6.616 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.085 0.915 18 C -0.009 4.009 19 N -0.915 5.915 20 Si 1.000 3.000 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.062 4.062 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.400 0.600 38 H 0.281 0.719 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 19.495 -9.302 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.089 4.089 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.095 4.095 8 C -0.143 4.143 9 C 0.350 3.650 10 O -0.424 6.424 11 O -0.252 6.252 12 C -0.006 4.006 13 C 0.224 3.776 14 O -0.503 6.503 15 N -0.194 5.194 16 C -0.468 4.468 17 H 0.103 0.897 18 C -0.210 4.210 19 N -0.555 5.555 20 Si 0.822 3.178 21 H -0.194 1.194 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.081 4.081 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.793 19.513 -8.979 25.527 hybrid contribution 0.898 -1.271 0.159 1.564 sum -12.895 18.242 -8.820 24.018 Atomic orbital electron populations 1.21869 0.93015 1.01987 1.03162 1.20191 0.96896 0.96498 0.93880 1.21868 1.00855 0.94145 1.03164 1.20083 0.97307 0.94817 0.96695 1.21640 0.96874 0.99309 0.90886 1.21478 0.97300 0.94665 1.00831 1.21652 0.95571 0.96154 0.96081 1.19113 1.03429 0.95335 0.96431 1.21841 0.77802 0.83606 0.81710 1.90780 1.57096 1.66560 1.27930 1.86587 1.62131 1.40595 1.35932 1.22561 0.95935 0.86415 0.95738 1.20016 0.83874 0.83443 0.90299 1.90519 1.59759 1.62710 1.37333 1.41731 1.44003 1.24120 1.09535 1.19700 1.30634 1.10475 0.86020 0.89684 1.26167 0.95820 0.96100 1.02933 1.69676 1.35321 1.21708 1.28797 0.84890 0.78457 0.77728 0.76684 1.19428 1.19339 1.19420 1.21237 0.95193 0.94369 0.97271 0.91376 0.90968 0.93329 0.90432 0.93328 0.90968 0.91375 0.82114 0.82381 0.85413 0.87550 0.87539 0.76549 0.90909 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.01 71.98 0.65 -0.75 16 2 C -0.06 -0.69 3.09 -11.54 -0.04 -0.73 16 3 C -0.14 -1.39 9.01 71.98 0.65 -0.75 16 4 C -0.09 -1.54 4.78 -19.90 -0.10 -1.63 16 5 C -0.07 -1.02 8.71 22.33 0.19 -0.82 16 6 C -0.13 -2.22 10.03 22.23 0.22 -2.00 16 7 C -0.08 -1.95 9.62 22.54 0.22 -1.73 16 8 C -0.14 -4.08 5.87 -20.10 -0.12 -4.20 16 9 C 0.50 17.86 7.90 70.33 0.56 18.42 16 10 O -0.53 -20.15 16.14 19.93 0.32 -19.82 16 11 O -0.34 -13.49 9.01 -49.80 -0.45 -13.94 16 12 C 0.07 2.82 5.95 71.24 0.42 3.24 16 13 C 0.44 21.94 7.86 87.66 0.69 22.63 16 14 O -0.62 -35.66 16.08 15.72 0.25 -35.41 16 15 N -0.56 -29.12 5.29 -306.98 -1.62 -30.74 16 16 C -0.34 -19.26 9.68 84.04 0.81 -18.44 16 17 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 18 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 19 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 20 Si 1.00 42.28 29.55 68.60 2.03 44.30 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 C -0.06 -1.48 9.21 22.53 0.21 -1.27 16 25 H 0.07 0.53 7.38 -2.39 -0.02 0.51 16 26 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.08 1.01 7.87 -2.38 -0.02 0.99 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.53 7.38 -2.38 -0.02 0.51 16 32 H 0.16 1.27 7.08 -2.91 -0.02 1.25 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.13 3.64 7.61 -2.91 -0.02 3.62 16 35 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 36 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.40 19.73 7.90 -92.70 -0.73 19.00 16 38 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 39 H 0.13 3.13 7.53 -2.91 -0.02 3.11 16 Total: -1.00 -70.42 341.77 5.99 -64.43 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.34 Total: 28.02 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 4.84 Total: 11.94 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -1.34 Total: -79.52 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: 0.13 Total: -69.17 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.42 5.99 -64.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850282016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.815 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds