Wall clock time and date at job start Tue Mar 31 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99549 * 2 1 4 4 C 1.53004 * 109.46800 * 124.99948 * 3 2 1 5 5 O 1.42907 * 109.46878 * 179.97438 * 4 3 2 6 6 N 1.41593 * 113.99906 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00091 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00246 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.07991 * 120.00177 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99372 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00566 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47337 * 5.00124 * 3 2 1 29 29 H 1.09001 * 109.46859 * 244.99632 * 3 2 1 30 30 H 1.08998 * 109.47470 * 59.99889 * 4 3 2 31 31 H 1.09001 * 109.47156 * 299.99502 * 4 3 2 32 32 H 0.97005 * 120.00305 * 0.02562 * 6 5 4 33 33 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 34 34 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 35 35 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 36 36 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 39 39 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 8 3.7498 2.5706 1.1814 6 7 4.6799 2.6987 2.2413 7 6 5.4200 3.8191 2.3567 8 8 5.2889 4.7179 1.5530 9 6 6.4103 3.9552 3.4845 10 6 7.1017 5.2906 3.3874 11 6 6.5679 6.3925 4.0306 12 6 7.1994 7.6176 3.9440 13 6 8.3715 7.7426 3.2095 14 8 8.9949 8.9454 3.1230 15 6 8.4898 9.9514 3.8651 16 1 7.5801 9.8033 4.4278 17 6 9.1385 11.1762 3.9056 18 7 10.2470 11.3566 3.2205 19 14 8.4392 12.5698 4.9343 20 1 7.1947 12.1143 5.6043 21 1 9.4337 12.9756 5.9596 22 1 8.1328 13.7277 4.0564 23 6 8.9017 6.6357 2.5596 24 6 8.2685 5.4121 2.6547 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 3.7399 0.5067 1.0922 31 1 2.4771 1.2357 2.1131 32 1 4.7845 1.9800 2.8843 33 1 7.1496 3.1571 3.4170 34 1 5.8869 3.8859 4.4381 35 1 5.6567 6.2946 4.6020 36 1 6.7823 8.4775 4.4469 37 1 10.7005 12.2135 3.2485 38 1 9.8105 6.7307 1.9840 39 1 8.6826 4.5500 2.1532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856032456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:17 Heat of formation + Delta-G solvation = -16.539877 kcal Electronic energy + Delta-G solvation = -21413.985666 eV Core-core repulsion = 17904.279388 eV Total energy + Delta-G solvation = -3509.706278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66586 -38.78493 -37.71508 -36.39756 -35.39767 -32.72248 -32.28345 -31.06619 -30.11285 -29.25127 -26.47705 -25.04887 -23.57920 -21.94073 -21.46183 -20.35976 -20.01693 -18.28071 -17.94073 -16.92887 -16.88292 -16.43305 -15.44834 -15.05302 -14.83236 -14.53794 -14.34762 -14.24468 -13.76366 -13.56793 -13.45285 -13.40298 -12.69520 -12.64413 -12.43681 -12.19525 -11.83903 -11.59572 -11.51175 -11.24887 -11.05324 -10.84313 -10.74476 -10.57325 -10.38911 -9.94009 -9.72946 -9.28623 -8.95737 -8.79527 -8.10897 -7.13870 -6.41513 -3.99760 1.55928 1.89699 2.29729 2.43110 2.77752 3.15343 3.16559 3.22319 4.00091 4.14657 4.43688 4.50958 4.65151 4.69629 4.80835 4.91227 4.93600 5.13613 5.23017 5.26502 5.32079 5.34553 5.45576 5.56543 5.62178 5.76152 5.88273 6.11808 6.23799 6.25911 6.45656 6.70487 6.75032 6.94969 7.08798 7.25093 7.30157 7.40003 7.48946 7.87518 8.04055 8.36682 9.04283 9.75007 10.76650 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.002311 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.283032 B =12114.502960 C =12475.888650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 C -0.089 4.089 4 C 0.038 3.962 5 O -0.150 6.150 6 N -0.608 5.608 7 C 0.517 3.483 8 O -0.500 6.500 9 C -0.064 4.064 10 C -0.175 4.175 11 C -0.054 4.054 12 C -0.233 4.233 13 C 0.159 3.841 14 O -0.177 6.177 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.192 4.192 24 C -0.057 4.057 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.269 0.731 38 H 0.117 0.883 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 -22.615 0.290 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.173 4.173 3 C -0.127 4.127 4 C -0.040 4.040 5 O -0.154 6.154 6 N -0.313 5.313 7 C 0.304 3.696 8 O -0.371 6.371 9 C -0.104 4.104 10 C -0.177 4.177 11 C -0.072 4.072 12 C -0.252 4.252 13 C 0.105 3.895 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.211 4.211 24 C -0.075 4.075 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.242 0.758 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.526 -21.483 -0.629 25.394 hybrid contribution -0.598 -0.031 0.784 0.987 sum -14.124 -21.514 0.155 25.736 Atomic orbital electron populations 1.23949 0.95865 1.02262 0.99946 1.22740 0.95994 0.97688 1.00909 1.20595 0.97691 0.96482 0.97941 1.22891 0.94443 0.87076 0.99596 1.90596 1.50506 1.36849 1.37416 1.47908 1.37615 1.20970 1.24778 1.21423 0.80473 0.80186 0.87493 1.90778 1.65478 1.38648 1.42206 1.20324 0.96041 0.98309 0.95712 1.18560 0.98639 0.93286 1.07187 1.20521 0.97347 0.92066 0.97261 1.21107 0.98719 0.98238 1.07170 1.19404 0.90934 0.86761 0.92437 1.83976 1.50719 1.14505 1.58868 1.21391 1.09424 0.89571 1.26276 0.88973 1.25299 0.95711 0.97971 0.97621 1.70050 1.16170 1.24751 1.38786 0.85639 0.78783 0.79970 0.78981 1.19095 1.20167 1.20171 1.20155 1.02964 0.91152 1.06858 1.20413 0.94408 0.96167 0.96519 0.88265 0.88118 0.87003 0.90148 0.89592 0.92120 0.92139 0.75779 0.88450 0.88500 0.87680 0.85506 0.92099 0.86456 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 14.32 29.02 0.42 -0.58 16 2 C -0.16 -0.89 9.52 -36.02 -0.34 -1.24 16 3 C -0.09 -0.64 6.03 -27.88 -0.17 -0.81 16 4 C 0.04 0.29 6.21 37.16 0.23 0.52 16 5 O -0.15 -1.90 11.11 -29.66 -0.33 -2.23 16 6 N -0.61 -6.79 6.39 31.22 0.20 -6.59 16 7 C 0.52 7.62 7.97 -10.98 -0.09 7.53 16 8 O -0.50 -10.35 16.44 -12.64 -0.21 -10.56 16 9 C -0.06 -0.77 5.83 -29.04 -0.17 -0.94 16 10 C -0.18 -3.06 4.38 -104.58 -0.46 -3.52 16 11 C -0.05 -1.02 9.69 -39.61 -0.38 -1.41 16 12 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16 13 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 14 O -0.18 -5.21 9.76 0.05 0.00 -5.20 16 15 C -0.39 -11.16 9.49 30.89 0.29 -10.86 16 16 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 19 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 C -0.19 -4.23 9.99 -39.39 -0.39 -4.63 16 24 C -0.06 -1.05 9.69 -39.61 -0.38 -1.44 16 25 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 26 H 0.10 0.42 8.06 -52.49 -0.42 0.00 16 27 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 28 H 0.08 0.63 7.79 -51.93 -0.40 0.22 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 2.64 8.54 -40.82 -0.35 2.29 16 33 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -36.44 346.87 -6.63 -43.07 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.09 Total: 3.66 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.16 Total: -18.30 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.96 Total: -31.54 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.54 Total: -17.99 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.44 -6.63 -43.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856032456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.530 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds